data_XUB # _chem_comp.id XUB _chem_comp.name "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl](4'-chloro[1,1'-biphenyl]-4-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H22 Cl N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-08 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.938 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XUB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G5D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XUB C02 C1 C 0 1 N N N N N N -12.716 12.653 50.374 3.868 -2.933 0.131 C02 XUB 1 XUB C04 C2 C 0 1 N N R N N N -11.823 11.021 49.216 1.982 -1.626 0.550 C04 XUB 2 XUB C05 C3 C 0 1 N N R N N N -13.040 11.275 49.920 2.434 -2.848 -0.346 C05 XUB 3 XUB C06 C4 C 0 1 N N N N N N -14.083 11.047 48.882 1.344 -3.816 0.063 C06 XUB 4 XUB C11 C5 C 0 1 N N N N N N -10.695 13.281 51.805 5.564 -1.054 -0.038 C11 XUB 5 XUB C15 C6 C 0 1 Y N N N N N -8.049 11.246 53.576 7.349 2.159 0.686 C15 XUB 6 XUB C16 C7 C 0 1 Y N N N N N -8.347 13.869 52.501 4.910 1.314 -0.382 C16 XUB 7 XUB C17 C8 C 0 1 Y N N N N N -7.122 13.468 53.141 5.192 2.680 -0.296 C17 XUB 8 XUB C18 C9 C 0 1 Y N N N N N -6.978 12.187 53.655 6.422 3.099 0.243 C18 XUB 9 XUB C22 C10 C 0 1 N N N N N N -14.176 9.288 47.071 -1.143 -3.400 -0.217 C22 XUB 10 XUB C23 C11 C 0 1 Y N N N N N -13.508 8.130 46.303 -2.272 -2.450 -0.164 C23 XUB 11 XUB C25 C12 C 0 1 Y N N N N N -13.375 6.878 46.959 -2.090 -1.125 -0.568 C25 XUB 12 XUB C26 C13 C 0 1 Y N N N N N -12.803 5.830 46.272 -3.144 -0.240 -0.520 C26 XUB 13 XUB C27 C14 C 0 1 Y N N N N N -12.387 6.034 44.927 -4.393 -0.666 -0.066 C27 XUB 14 XUB C28 C15 C 0 1 Y N N N N N -12.545 7.280 44.267 -4.576 -1.989 0.337 C28 XUB 15 XUB N01 N1 N 0 1 N N N N N N -11.409 12.368 50.925 4.301 -1.500 0.105 N01 XUB 16 XUB C03 C16 C 0 1 N N N N N N -10.913 11.079 50.423 3.081 -0.653 0.265 C03 XUB 17 XUB N07 N2 N 0 1 N N N N N N -13.511 9.970 48.123 0.115 -2.964 -0.007 N07 XUB 18 XUB C08 C17 C 0 1 N N N N N N -12.124 9.685 48.576 0.533 -1.545 0.197 C08 XUB 19 XUB C12 C18 C 0 1 Y N N N N N -9.370 12.930 52.409 5.852 0.392 0.055 C12 XUB 20 XUB O13 O1 O 0 1 N N N N N N -11.252 14.313 52.130 6.468 -1.842 -0.244 O13 XUB 21 XUB C14 C19 C 0 1 Y N N N N N -9.238 11.618 52.959 7.071 0.827 0.595 C14 XUB 22 XUB N19 N3 N 0 1 Y N N N N N -5.725 12.078 54.243 6.411 4.471 0.197 N19 XUB 23 XUB N20 N4 N 0 1 Y N N N N N -5.095 13.287 54.044 5.181 4.845 -0.364 N20 XUB 24 XUB N21 N5 N 0 1 Y N N N N N -5.948 14.148 53.379 4.497 3.791 -0.640 N21 XUB 25 XUB O24 O2 O 0 1 N N N N N N -15.320 9.583 46.760 -1.348 -4.576 -0.449 O24 XUB 26 XUB C29 C20 C 0 1 Y N N N N N -13.110 8.323 44.956 -3.525 -2.877 0.284 C29 XUB 27 XUB C30 C21 C 0 1 Y N N N N N -11.849 4.957 44.236 -5.526 0.288 -0.013 C30 XUB 28 XUB C31 C22 C 0 1 Y N N N N N -12.245 3.666 44.593 -6.775 -0.134 0.439 C31 XUB 29 XUB C32 C23 C 0 1 Y N N N N N -11.718 2.570 43.918 -7.827 0.758 0.486 C32 XUB 30 XUB C33 C24 C 0 1 Y N N N N N -10.801 2.800 42.830 -7.643 2.070 0.086 C33 XUB 31 XUB C34 C25 C 0 1 Y N N N N N -10.421 4.088 42.461 -6.405 2.495 -0.365 C34 XUB 32 XUB C35 C26 C 0 1 Y N N N N N -10.956 5.181 43.156 -5.345 1.612 -0.410 C35 XUB 33 XUB CL36 CL1 CL 0 0 N N N N N N -10.183 1.462 41.960 -8.971 3.187 0.148 CL36 XUB 34 XUB H37 H1 H 0 1 N N N N N N -13.420 13.020 51.135 3.917 -3.334 1.143 H37 XUB 35 XUB H38 H2 H 0 1 N N N N N N -12.672 13.369 49.540 4.468 -3.535 -0.552 H38 XUB 36 XUB H10 H3 H 0 1 N N N N N N -11.576 11.792 48.472 2.069 -1.933 1.593 H10 XUB 37 XUB H09 H4 H 0 1 N N N N N N -13.174 10.595 50.774 2.385 -2.612 -1.409 H09 XUB 38 XUB H41 H5 H 0 1 N N N N N N -15.041 10.753 49.335 1.281 -4.647 -0.639 H41 XUB 39 XUB H42 H6 H 0 1 N N N N N N -14.231 11.942 48.259 1.508 -4.177 1.079 H42 XUB 40 XUB H46 H7 H 0 1 N N N N N N -7.937 10.255 53.991 8.293 2.485 1.098 H46 XUB 41 XUB H47 H8 H 0 1 N N N N N N -8.468 14.866 52.105 3.970 0.978 -0.794 H47 XUB 42 XUB H49 H9 H 0 1 N N N N N N -13.715 6.750 47.976 -1.123 -0.795 -0.919 H49 XUB 43 XUB H50 H10 H 0 1 N N N N N N -12.672 4.869 46.747 -3.003 0.784 -0.832 H50 XUB 44 XUB H51 H11 H 0 1 N N N N N N -12.227 7.405 43.243 -5.543 -2.317 0.688 H51 XUB 45 XUB H40 H12 H 0 1 N N N N N N -9.848 11.110 50.151 2.874 -0.106 -0.655 H40 XUB 46 XUB H39 H13 H 0 1 N N N N N N -11.088 10.253 51.128 3.204 0.037 1.100 H39 XUB 47 XUB H44 H14 H 0 1 N N N N N N -11.449 9.466 47.735 -0.033 -1.096 1.013 H44 XUB 48 XUB H43 H15 H 0 1 N N N N N N -12.086 8.859 49.302 0.396 -0.973 -0.721 H43 XUB 49 XUB H45 H16 H 0 1 N N N N N N -10.058 10.918 52.896 7.794 0.104 0.940 H45 XUB 50 XUB H48 H17 H 0 1 N N N N N N -5.353 11.280 54.717 7.116 5.066 0.496 H48 XUB 51 XUB H52 H18 H 0 1 N N N N N N -13.250 9.281 44.477 -3.668 -3.902 0.592 H52 XUB 52 XUB H53 H19 H 0 1 N N N N N N -12.958 3.519 45.391 -6.920 -1.158 0.751 H53 XUB 53 XUB H54 H20 H 0 1 N N N N N N -11.991 1.565 44.204 -8.795 0.431 0.836 H54 XUB 54 XUB H55 H21 H 0 1 N N N N N N -9.724 4.242 41.651 -6.267 3.520 -0.676 H55 XUB 55 XUB H56 H22 H 0 1 N N N N N N -10.690 6.188 42.871 -4.378 1.946 -0.757 H56 XUB 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XUB N01 C02 SING N N 1 XUB N01 C03 SING N N 2 XUB C03 C04 SING N N 3 XUB C02 C05 SING N N 4 XUB C04 C05 SING N N 5 XUB C05 C06 SING N N 6 XUB C06 N07 SING N N 7 XUB C04 C08 SING N N 8 XUB N07 C08 SING N N 9 XUB N01 C11 SING N N 10 XUB C11 C12 SING N N 11 XUB C11 O13 DOUB N N 12 XUB C12 C14 DOUB Y N 13 XUB C14 C15 SING Y N 14 XUB C12 C16 SING Y N 15 XUB C16 C17 DOUB Y N 16 XUB C15 C18 DOUB Y N 17 XUB C17 C18 SING Y N 18 XUB C18 N19 SING Y N 19 XUB N19 N20 SING Y N 20 XUB C17 N21 SING Y N 21 XUB N20 N21 DOUB Y N 22 XUB N07 C22 SING N N 23 XUB C22 C23 SING N N 24 XUB C22 O24 DOUB N N 25 XUB C23 C25 DOUB Y N 26 XUB C25 C26 SING Y N 27 XUB C26 C27 DOUB Y N 28 XUB C27 C28 SING Y N 29 XUB C23 C29 SING Y N 30 XUB C28 C29 DOUB Y N 31 XUB C27 C30 SING N N 32 XUB C30 C31 DOUB Y N 33 XUB C31 C32 SING Y N 34 XUB C32 C33 DOUB Y N 35 XUB C33 C34 SING Y N 36 XUB C30 C35 SING Y N 37 XUB C34 C35 DOUB Y N 38 XUB C33 CL36 SING N N 39 XUB C02 H37 SING N N 40 XUB C02 H38 SING N N 41 XUB C04 H10 SING N N 42 XUB C05 H09 SING N N 43 XUB C06 H41 SING N N 44 XUB C06 H42 SING N N 45 XUB C15 H46 SING N N 46 XUB C16 H47 SING N N 47 XUB C25 H49 SING N N 48 XUB C26 H50 SING N N 49 XUB C28 H51 SING N N 50 XUB C03 H40 SING N N 51 XUB C03 H39 SING N N 52 XUB C08 H44 SING N N 53 XUB C08 H43 SING N N 54 XUB C14 H45 SING N N 55 XUB N19 H48 SING N N 56 XUB C29 H52 SING N N 57 XUB C31 H53 SING N N 58 XUB C32 H54 SING N N 59 XUB C34 H55 SING N N 60 XUB C35 H56 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XUB SMILES ACDLabs 12.01 "Clc1ccc(cc1)c1ccc(cc1)C(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1" XUB InChI InChI 1.06 "InChI=1S/C26H22ClN5O2/c27-22-8-5-17(6-9-22)16-1-3-18(4-2-16)25(33)31-12-20-14-32(15-21(20)13-31)26(34)19-7-10-23-24(11-19)29-30-28-23/h1-11,20-21H,12-15H2,(H,28,29,30)" XUB InChIKey InChI 1.06 JLMNCPWXRMABPO-UHFFFAOYSA-N XUB SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(cc1)c2ccc(cc2)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6[nH]nnc6c5" XUB SMILES CACTVS 3.385 "Clc1ccc(cc1)c2ccc(cc2)C(=O)N3C[CH]4CN(C[CH]4C3)C(=O)c5ccc6[nH]nnc6c5" XUB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2ccc(cc2)Cl)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6c(c5)nn[nH]6" XUB SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2ccc(cc2)Cl)C(=O)N3CC4CN(CC4C3)C(=O)c5ccc6c(c5)nn[nH]6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XUB "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl](4'-chloro[1,1'-biphenyl]-4-yl)methanone" XUB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{R},6~{a}~{R})-5-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-[4-(4-chlorophenyl)phenyl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XUB "Create component" 2023-06-08 RCSB XUB "Initial release" 2024-12-18 RCSB #