data_XUR # _chem_comp.id XUR _chem_comp.name "(2S,4S)-5-carbamimidamido-4-hydroxy-2-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]pentanoic acid (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H22 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-12 _chem_comp.pdbx_modified_date 2023-04-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 419.327 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XUR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FFU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XUR C1 C1 C 0 1 Y N N -25.818 1.575 -19.466 -1.369 -2.421 2.720 C1 XUR 1 XUR C3 C2 C 0 1 Y N N -25.506 1.133 -22.170 -2.156 -0.668 0.777 C3 XUR 2 XUR C4 C3 C 0 1 Y N N -24.376 1.020 -21.332 -0.909 -1.290 0.649 C4 XUR 3 XUR C5 C4 C 0 1 Y N N -24.544 1.247 -19.953 -0.513 -2.190 1.653 C5 XUR 4 XUR C6 C5 C 0 1 N N N -23.066 0.676 -21.903 -0.032 -1.005 -0.504 C6 XUR 5 XUR C7 C6 C 0 1 N N S -20.740 0.212 -21.829 1.986 -1.308 -1.748 C7 XUR 6 XUR C8 C7 C 0 1 N N N -20.634 0.830 -23.229 3.313 -0.732 -1.250 C8 XUR 7 XUR C9 C8 C 0 1 N N S -21.057 -0.084 -24.371 3.063 0.624 -0.587 C9 XUR 8 XUR C11 C9 C 0 1 N N N -22.419 1.746 -26.582 5.135 3.035 1.392 C11 XUR 9 XUR C12 C10 C 0 1 N N N -19.609 0.797 -21.001 2.246 -2.583 -2.508 C12 XUR 10 XUR O2 O1 O 0 1 N N N -18.491 0.330 -20.938 1.755 -3.621 -2.132 O2 XUR 11 XUR N N1 N 0 1 Y N N -26.878 1.678 -20.272 -2.536 -1.814 2.793 N XUR 12 XUR C C11 C 0 1 N N N -26.041 1.824 -18.004 -0.962 -3.384 3.806 C XUR 13 XUR O O2 O 0 1 N N N -23.530 1.164 -19.059 0.686 -2.821 1.580 O XUR 14 XUR C10 C12 C 0 1 N N N -20.561 0.449 -25.706 4.368 1.143 0.020 C10 XUR 15 XUR C13 C13 C 0 1 N N N -25.431 0.910 -23.656 -2.635 0.307 -0.268 C13 XUR 16 XUR C2 C14 C 0 1 Y N N -26.708 1.461 -21.581 -2.943 -0.963 1.871 C2 XUR 17 XUR N1 N2 N 0 1 N N N -22.012 0.570 -21.196 1.116 -1.591 -0.603 N1 XUR 18 XUR N2 N3 N 0 1 N N N -21.243 1.696 -26.073 4.105 2.382 0.757 N2 XUR 19 XUR N3 N4 N 0 1 N N N -23.046 2.846 -26.999 6.344 2.553 1.339 N3 XUR 20 XUR N4 N5 N 0 1 N N N -23.046 0.578 -26.733 4.888 4.198 2.084 N4 XUR 21 XUR O1 O3 O 0 1 N N N -20.529 -1.399 -24.169 2.591 1.553 -1.565 O1 XUR 22 XUR O3 O4 O 0 1 N N N -19.989 1.864 -20.358 3.022 -2.565 -3.603 O3 XUR 23 XUR O4 O5 O 0 1 N N N -25.252 -0.504 -23.873 -3.930 0.793 0.091 O4 XUR 24 XUR O5 O6 O 0 1 N N N -25.802 -2.700 -24.957 -5.118 1.190 -2.220 O5 XUR 25 XUR O6 O7 O 0 1 N N N -27.630 -1.270 -24.010 -6.099 2.273 -0.035 O6 XUR 26 XUR O7 O8 O 0 1 N N N -26.489 -0.533 -26.052 -3.913 3.057 -1.024 O7 XUR 27 XUR P P1 P 0 1 N N N -26.305 -1.321 -24.757 -4.747 1.855 -0.802 P XUR 28 XUR H1 H1 H 0 1 N N N -22.994 0.506 -22.967 -0.351 -0.308 -1.265 H1 XUR 29 XUR H2 H2 H 0 1 N N N -20.631 -0.881 -21.895 1.500 -0.586 -2.404 H2 XUR 30 XUR H3 H3 H 0 1 N N N -19.586 1.121 -23.395 3.757 -1.414 -0.525 H3 XUR 31 XUR H4 H4 H 0 1 N N N -21.272 1.726 -23.255 3.993 -0.604 -2.093 H4 XUR 32 XUR H5 H5 H 0 1 N N N -22.156 -0.125 -24.397 2.316 0.513 0.199 H5 XUR 33 XUR H6 H6 H 0 1 N N N -27.100 2.063 -17.830 -0.426 -2.845 4.587 H6 XUR 34 XUR H7 H7 H 0 1 N N N -25.770 0.923 -17.433 -1.851 -3.849 4.231 H7 XUR 35 XUR H8 H8 H 0 1 N N N -25.416 2.668 -17.676 -0.315 -4.153 3.385 H8 XUR 36 XUR H9 H9 H 0 1 N N N -23.859 1.353 -18.188 1.410 -2.341 2.005 H9 XUR 37 XUR H10 H10 H 0 1 N N N -20.750 -0.305 -26.485 4.775 0.395 0.701 H10 XUR 38 XUR H11 H11 H 0 1 N N N -19.480 0.640 -25.636 5.086 1.339 -0.776 H11 XUR 39 XUR H12 H12 H 0 1 N N N -24.580 1.465 -24.077 -1.938 1.143 -0.332 H12 XUR 40 XUR H13 H13 H 0 1 N N N -26.362 1.249 -24.134 -2.690 -0.195 -1.234 H13 XUR 41 XUR H14 H14 H 0 1 N N N -27.573 1.549 -22.221 -3.907 -0.487 1.976 H14 XUR 42 XUR H15 H15 H 0 1 N N N -20.762 2.558 -25.917 3.205 2.741 0.797 H15 XUR 43 XUR H16 H16 H 0 1 N N N -22.488 3.666 -26.872 6.518 1.733 0.851 H16 XUR 44 XUR H18 H18 H 0 1 N N N -22.596 -0.271 -26.455 3.988 4.557 2.123 H18 XUR 45 XUR H19 H19 H 0 1 N N N -23.966 0.551 -27.124 5.614 4.659 2.532 H19 XUR 46 XUR H20 H20 H 0 1 N N N -20.835 -1.739 -23.336 3.206 1.702 -2.296 H20 XUR 47 XUR H21 H21 H 0 1 N N N -19.263 2.202 -19.848 3.160 -3.408 -4.057 H21 XUR 48 XUR H22 H22 H 0 1 N N N -25.677 -2.861 -25.885 -5.665 0.395 -2.151 H22 XUR 49 XUR H23 H23 H 0 1 N N N -28.259 -0.767 -24.514 -6.642 2.912 -0.516 H23 XUR 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XUR N3 C11 DOUB N N 1 XUR N4 C11 SING N N 2 XUR C11 N2 SING N N 3 XUR N2 C10 SING N N 4 XUR O7 P DOUB N N 5 XUR C10 C9 SING N N 6 XUR O5 P SING N N 7 XUR P O6 SING N N 8 XUR P O4 SING N N 9 XUR C9 O1 SING N N 10 XUR C9 C8 SING N N 11 XUR O4 C13 SING N N 12 XUR C13 C3 SING N N 13 XUR C8 C7 SING N N 14 XUR C3 C2 DOUB Y N 15 XUR C3 C4 SING Y N 16 XUR C6 C4 SING N N 17 XUR C6 N1 DOUB N N 18 XUR C7 N1 SING N N 19 XUR C7 C12 SING N N 20 XUR C2 N SING Y N 21 XUR C4 C5 DOUB Y N 22 XUR C12 O2 DOUB N N 23 XUR C12 O3 SING N N 24 XUR N C1 DOUB Y N 25 XUR C5 C1 SING Y N 26 XUR C5 O SING N N 27 XUR C1 C SING N N 28 XUR C6 H1 SING N N 29 XUR C7 H2 SING N N 30 XUR C8 H3 SING N N 31 XUR C8 H4 SING N N 32 XUR C9 H5 SING N N 33 XUR C H6 SING N N 34 XUR C H7 SING N N 35 XUR C H8 SING N N 36 XUR O H9 SING N N 37 XUR C10 H10 SING N N 38 XUR C10 H11 SING N N 39 XUR C13 H12 SING N N 40 XUR C13 H13 SING N N 41 XUR C2 H14 SING N N 42 XUR N2 H15 SING N N 43 XUR N3 H16 SING N N 44 XUR N4 H18 SING N N 45 XUR N4 H19 SING N N 46 XUR O1 H20 SING N N 47 XUR O3 H21 SING N N 48 XUR O5 H22 SING N N 49 XUR O6 H23 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XUR SMILES ACDLabs 12.01 "Oc1c(/C=N/C(CC(O)CNC(=N)N)C(=O)O)c(cnc1C)COP(=O)(O)O" XUR InChI InChI 1.06 "InChI=1S/C14H22N5O8P/c1-7-12(21)10(8(3-17-7)6-27-28(24,25)26)5-18-11(13(22)23)2-9(20)4-19-14(15)16/h3,5,9,11,20-21H,2,4,6H2,1H3,(H,22,23)(H4,15,16,19)(H2,24,25,26)/b18-5+/t9-,11-/m0/s1" XUR InChIKey InChI 1.06 RHWJRTHWGVRULK-IUDJVARUSA-N XUR SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[C@@H](C[C@H](O)CNC(N)=N)C(O)=O)c1O" XUR SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[CH](C[CH](O)CNC(N)=N)C(O)=O)c1O" XUR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/NC[C@H](C[C@@H](C(=O)O)/N=C/c1c(cnc(c1O)C)COP(=O)(O)O)O" XUR SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(CC(CNC(=N)N)O)C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XUR "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,4S)-5-carbamimidamido-4-hydroxy-2-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]pentanoic acid (non-preferred name)" XUR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},4~{S})-5-carbamimidamido-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-4-oxidanyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XUR "Create component" 2022-12-12 RCSB XUR "Initial release" 2023-04-12 RCSB #