data_XV6 # _chem_comp.id XV6 _chem_comp.name ;[4R-(4ALPHA,5ALPHA,6BETA,7BETA)]-3,3'-[[TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-D IYL] BIS(METHYLENE)]BIS[N-2-THIAZOLYLBENZAMIDE] ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C41 H38 N6 O5 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms XV638 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-10-04 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces 638 _chem_comp.formula_weight 758.908 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XV6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BV7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XV6 O1 O1 O 0 1 N N N -8.243 14.227 27.865 -1.981 -2.159 0.778 O1 XV6 1 XV6 O4 O4 O 0 1 N N N -11.697 18.691 28.877 -1.292 2.402 -2.047 O4 XV6 2 XV6 O5 O5 O 0 1 N N N -10.104 19.492 26.750 0.840 0.181 -2.280 O5 XV6 3 XV6 N2 N2 N 0 1 N N N -9.653 15.574 28.900 -2.759 -0.434 -0.274 N2 XV6 4 XV6 N7 N7 N 0 1 N N N -8.686 16.093 26.792 -0.993 -1.778 -1.130 N7 XV6 5 XV6 C1 C1 C 0 1 N N N -8.859 15.282 27.852 -1.916 -1.452 -0.209 C1 XV6 6 XV6 C2 C2 C 0 1 N N N -9.421 14.815 30.135 -3.803 -0.343 0.748 C2 XV6 7 XV6 C3 C3 C 0 1 N N R -10.812 16.472 28.862 -2.717 0.603 -1.298 C3 XV6 8 XV6 C4 C4 C 0 1 N N S -10.549 17.940 28.543 -1.273 1.061 -1.552 C4 XV6 9 XV6 C5 C5 C 0 1 N N S -10.194 18.136 27.084 -0.561 0.172 -2.559 C5 XV6 10 XV6 C6 C6 C 0 1 N N R -8.813 17.577 26.823 -1.069 -1.258 -2.496 C6 XV6 11 XV6 C7 C7 C 0 1 N N N -8.103 15.468 25.598 0.107 -2.670 -0.760 C7 XV6 12 XV6 C31 C31 C 0 1 N N N -11.911 15.732 28.064 -3.297 0.050 -2.602 C31 XV6 13 XV6 C32 C32 C 0 1 Y N N -12.443 14.530 28.838 -4.516 0.847 -2.987 C32 XV6 14 XV6 C33 C33 C 0 1 Y N N -12.072 13.214 28.461 -4.386 1.965 -3.790 C33 XV6 15 XV6 C34 C34 C 0 1 Y N N -12.516 12.109 29.213 -5.504 2.696 -4.144 C34 XV6 16 XV6 C35 C35 C 0 1 Y N N -13.341 12.317 30.334 -6.753 2.309 -3.695 C35 XV6 17 XV6 C36 C36 C 0 1 Y N N -13.730 13.624 30.714 -6.884 1.191 -2.892 C36 XV6 18 XV6 C37 C37 C 0 1 Y N N -13.280 14.733 29.969 -5.765 0.457 -2.542 C37 XV6 19 XV6 C61 C61 C 0 1 N N N -7.691 18.232 27.694 -0.215 -2.136 -3.413 C61 XV6 20 XV6 C62 C62 C 0 1 Y N N -6.256 17.980 27.239 -0.417 -1.712 -4.845 C62 XV6 21 XV6 C63 C63 C 0 1 Y N N -5.458 17.040 27.917 0.462 -0.824 -5.434 C63 XV6 22 XV6 C64 C64 C 0 1 Y N N -4.151 16.763 27.477 0.277 -0.435 -6.747 C64 XV6 23 XV6 C65 C65 C 0 1 Y N N -3.646 17.429 26.349 -0.788 -0.935 -7.472 C65 XV6 24 XV6 C66 C66 C 0 1 Y N N -4.435 18.370 25.667 -1.667 -1.825 -6.884 C66 XV6 25 XV6 C67 C67 C 0 1 Y N N -5.740 18.658 26.111 -1.479 -2.217 -5.572 C67 XV6 26 XV6 C20 C20 C 0 1 Y N N -9.328 15.597 31.419 -3.292 0.461 1.916 C20 XV6 27 XV6 C21 C21 C 0 1 Y N N -9.995 15.108 32.550 -2.653 -0.172 2.961 C21 XV6 28 XV6 C22 C22 C 0 1 Y N N -9.898 15.797 33.778 -2.175 0.575 4.039 C22 XV6 29 XV6 C23 C23 C 0 1 Y N N -9.124 16.969 33.879 -2.359 1.958 4.057 C23 XV6 30 XV6 C24 C24 C 0 1 Y N N -8.451 17.457 32.747 -3.006 2.579 3.008 C24 XV6 31 XV6 C25 C25 C 0 1 Y N N -8.561 16.781 31.519 -3.471 1.833 1.940 C25 XV6 32 XV6 C26 C26 C 0 1 N N N -10.652 15.313 34.970 -1.483 -0.096 5.159 C26 XV6 33 XV6 O26 O26 O 0 1 N N N -10.969 16.014 35.920 -1.324 -1.301 5.141 O26 XV6 34 XV6 N26 N26 N 0 1 N N N -10.916 14.001 34.901 -1.027 0.627 6.200 N26 XV6 35 XV6 N27 N27 N 0 1 Y N N -11.546 11.870 36.035 -0.116 -1.285 7.417 N27 XV6 36 XV6 C27 C27 C 0 1 Y N N -11.519 13.215 35.980 -0.376 -0.003 7.253 C27 XV6 37 XV6 C28 C28 C 0 1 Y N N -12.245 11.403 37.121 0.521 -1.722 8.485 C28 XV6 38 XV6 S29 S29 S 0 1 Y N N -12.350 13.874 37.285 0.296 0.693 8.694 S29 XV6 39 XV6 C29 C29 C 0 1 Y N N -12.790 12.393 37.965 0.898 -0.821 9.425 C29 XV6 40 XV6 C70 C70 C 0 1 Y N N -8.789 15.754 24.302 1.208 -1.869 -0.115 C70 XV6 41 XV6 C71 C71 C 0 1 Y N N -7.995 16.106 23.216 2.286 -1.450 -0.867 C71 XV6 42 XV6 C72 C72 C 0 1 Y N N -8.602 16.455 21.990 3.302 -0.703 -0.268 C72 XV6 43 XV6 C73 C73 C 0 1 Y N N -10.014 16.437 21.847 3.225 -0.395 1.090 C73 XV6 44 XV6 C74 C74 C 0 1 Y N N -10.815 16.059 22.941 2.145 -0.825 1.832 C74 XV6 45 XV6 C75 C75 C 0 1 Y N N -10.200 15.714 24.162 1.138 -1.560 1.231 C75 XV6 46 XV6 C76 C76 C 0 1 N N N -7.744 16.852 20.840 4.457 -0.245 -1.069 C76 XV6 47 XV6 O76 O76 O 0 1 N N N -8.112 17.614 19.966 4.521 -0.514 -2.253 O76 XV6 48 XV6 N76 N76 N 0 1 N N N -6.518 16.318 20.849 5.438 0.472 -0.487 N76 XV6 49 XV6 N77 N77 N 0 1 Y N N -4.333 16.073 19.691 6.773 0.708 -2.520 N77 XV6 50 XV6 C77 C77 C 0 1 Y N N -5.561 16.602 19.785 6.523 0.902 -1.240 C77 XV6 51 XV6 C78 C78 C 0 1 Y N N -3.695 16.454 18.539 7.860 1.195 -3.086 C78 XV6 52 XV6 S79 S79 S 0 1 Y N N -5.900 17.578 18.448 7.903 1.829 -0.735 S79 XV6 53 XV6 C79 C79 C 0 1 Y N N -4.420 17.314 17.689 8.730 1.896 -2.317 C79 XV6 54 XV6 HO41 1HO4 H 0 0 N N N -11.533 19.605 28.678 -0.371 2.665 -2.176 HO41 XV6 55 XV6 HO51 1HO5 H 0 0 N N N -9.881 19.615 25.834 1.135 1.099 -2.359 HO51 XV6 56 XV6 H21 1H2 H 0 1 N N N -10.203 14.027 30.237 -4.682 0.144 0.328 H21 XV6 57 XV6 H22 2H2 H 0 1 N N N -8.507 14.187 30.017 -4.070 -1.344 1.086 H22 XV6 58 XV6 H31 1H3 H 0 1 N N N -11.184 16.661 29.895 -3.315 1.454 -0.972 H31 XV6 59 XV6 H41 1H4 H 0 1 N N N -9.677 18.289 29.143 -0.725 1.040 -0.610 H41 XV6 60 XV6 H51 1H5 H 0 1 N N N -10.991 17.631 26.490 -0.727 0.565 -3.562 H51 XV6 61 XV6 H61 1H6 H 0 1 N N N -8.648 17.887 25.764 -2.104 -1.286 -2.834 H61 XV6 62 XV6 H71 1H7 H 0 1 N N N -7.023 15.736 25.520 -0.253 -3.422 -0.059 H71 XV6 63 XV6 H72 2H7 H 0 1 N N N -8.026 14.365 25.748 0.492 -3.162 -1.654 H72 XV6 64 XV6 H311 1H31 H 0 0 N N N -12.733 16.422 27.763 -2.550 0.123 -3.392 H311 XV6 65 XV6 H312 2H31 H 0 0 N N N -11.553 15.439 27.049 -3.575 -0.994 -2.461 H312 XV6 66 XV6 H331 1H33 H 0 0 N N N -11.433 13.048 27.576 -3.410 2.267 -4.141 H331 XV6 67 XV6 H341 1H34 H 0 0 N N N -12.219 11.086 28.925 -5.402 3.569 -4.770 H341 XV6 68 XV6 H351 1H35 H 0 0 N N N -13.685 11.448 30.919 -7.627 2.881 -3.970 H351 XV6 69 XV6 H361 1H36 H 0 0 N N N -14.382 13.778 31.589 -7.859 0.889 -2.541 H361 XV6 70 XV6 H371 1H37 H 0 0 N N N -13.580 15.751 30.268 -5.867 -0.416 -1.916 H371 XV6 71 XV6 H611 1H61 H 0 0 N N N -7.872 19.328 27.782 0.835 -2.026 -3.146 H611 XV6 72 XV6 H612 2H61 H 0 0 N N N -7.809 17.922 28.758 -0.512 -3.179 -3.297 H612 XV6 73 XV6 H631 1H63 H 0 0 N N N -5.860 16.516 28.800 1.294 -0.433 -4.867 H631 XV6 74 XV6 H641 1H64 H 0 0 N N N -3.526 16.028 28.012 0.964 0.259 -7.207 H641 XV6 75 XV6 H651 1H65 H 0 0 N N N -2.623 17.211 25.996 -0.933 -0.631 -8.498 H651 XV6 76 XV6 H661 1H66 H 0 0 N N N -4.028 18.884 24.780 -2.500 -2.216 -7.450 H661 XV6 77 XV6 H671 1H67 H 0 0 N N N -6.351 19.407 25.580 -2.166 -2.912 -5.112 H671 XV6 78 XV6 H211 1H21 H 0 0 N N N -10.593 14.184 32.474 -2.514 -1.243 2.941 H211 XV6 79 XV6 H231 1H23 H 0 0 N N N -9.045 17.502 34.841 -1.995 2.542 4.890 H231 XV6 80 XV6 H241 1H24 H 0 0 N N N -7.836 18.370 32.822 -3.148 3.649 3.020 H241 XV6 81 XV6 H251 1H25 H 0 0 N N N -8.043 17.181 30.630 -3.976 2.324 1.121 H251 XV6 82 XV6 HN26 HN26 H 0 0 N N N -10.651 13.590 34.005 -1.153 1.589 6.215 HN26 XV6 83 XV6 H281 1H28 H 0 0 N N N -12.359 10.320 37.300 0.735 -2.773 8.610 H281 XV6 84 XV6 H291 1H29 H 0 0 N N N -13.367 12.104 38.859 1.419 -0.976 10.359 H291 XV6 85 XV6 H711 1H71 H 0 0 N N N -6.897 16.108 23.325 2.339 -1.692 -1.918 H711 XV6 86 XV6 H731 1H73 H 0 0 N N N -10.486 16.715 20.890 4.010 0.179 1.560 H731 XV6 87 XV6 H741 1H74 H 0 0 N N N -11.913 16.033 22.842 2.084 -0.587 2.884 H741 XV6 88 XV6 H751 1H75 H 0 0 N N N -10.828 15.409 25.015 0.294 -1.894 1.816 H751 XV6 89 XV6 HN76 HN76 H 0 0 N N N -6.318 15.711 21.644 5.387 0.687 0.456 HN76 XV6 90 XV6 H781 1H78 H 0 0 N N N -2.676 16.096 18.313 8.056 1.035 -4.136 H781 XV6 91 XV6 H791 1H79 H 0 0 N N N -3.975 17.664 16.742 9.664 2.365 -2.587 H791 XV6 92 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XV6 O1 C1 DOUB N N 1 XV6 O4 C4 SING N N 2 XV6 O4 HO41 SING N N 3 XV6 O5 C5 SING N N 4 XV6 O5 HO51 SING N N 5 XV6 N2 C1 SING N N 6 XV6 N2 C2 SING N N 7 XV6 N2 C3 SING N N 8 XV6 N7 C1 SING N N 9 XV6 N7 C6 SING N N 10 XV6 N7 C7 SING N N 11 XV6 C2 C20 SING N N 12 XV6 C2 H21 SING N N 13 XV6 C2 H22 SING N N 14 XV6 C3 C4 SING N N 15 XV6 C3 C31 SING N N 16 XV6 C3 H31 SING N N 17 XV6 C4 C5 SING N N 18 XV6 C4 H41 SING N N 19 XV6 C5 C6 SING N N 20 XV6 C5 H51 SING N N 21 XV6 C6 C61 SING N N 22 XV6 C6 H61 SING N N 23 XV6 C7 C70 SING N N 24 XV6 C7 H71 SING N N 25 XV6 C7 H72 SING N N 26 XV6 C31 C32 SING N N 27 XV6 C31 H311 SING N N 28 XV6 C31 H312 SING N N 29 XV6 C32 C33 DOUB Y N 30 XV6 C32 C37 SING Y N 31 XV6 C33 C34 SING Y N 32 XV6 C33 H331 SING N N 33 XV6 C34 C35 DOUB Y N 34 XV6 C34 H341 SING N N 35 XV6 C35 C36 SING Y N 36 XV6 C35 H351 SING N N 37 XV6 C36 C37 DOUB Y N 38 XV6 C36 H361 SING N N 39 XV6 C37 H371 SING N N 40 XV6 C61 C62 SING N N 41 XV6 C61 H611 SING N N 42 XV6 C61 H612 SING N N 43 XV6 C62 C63 DOUB Y N 44 XV6 C62 C67 SING Y N 45 XV6 C63 C64 SING Y N 46 XV6 C63 H631 SING N N 47 XV6 C64 C65 DOUB Y N 48 XV6 C64 H641 SING N N 49 XV6 C65 C66 SING Y N 50 XV6 C65 H651 SING N N 51 XV6 C66 C67 DOUB Y N 52 XV6 C66 H661 SING N N 53 XV6 C67 H671 SING N N 54 XV6 C20 C21 DOUB Y N 55 XV6 C20 C25 SING Y N 56 XV6 C21 C22 SING Y N 57 XV6 C21 H211 SING N N 58 XV6 C22 C23 DOUB Y N 59 XV6 C22 C26 SING N N 60 XV6 C23 C24 SING Y N 61 XV6 C23 H231 SING N N 62 XV6 C24 C25 DOUB Y N 63 XV6 C24 H241 SING N N 64 XV6 C25 H251 SING N N 65 XV6 C26 O26 DOUB N N 66 XV6 C26 N26 SING N N 67 XV6 N26 C27 SING N N 68 XV6 N26 HN26 SING N N 69 XV6 N27 C27 DOUB Y N 70 XV6 N27 C28 SING Y N 71 XV6 C27 S29 SING Y N 72 XV6 C28 C29 DOUB Y N 73 XV6 C28 H281 SING N N 74 XV6 S29 C29 SING Y N 75 XV6 C29 H291 SING N N 76 XV6 C70 C71 DOUB Y N 77 XV6 C70 C75 SING Y N 78 XV6 C71 C72 SING Y N 79 XV6 C71 H711 SING N N 80 XV6 C72 C73 DOUB Y N 81 XV6 C72 C76 SING N N 82 XV6 C73 C74 SING Y N 83 XV6 C73 H731 SING N N 84 XV6 C74 C75 DOUB Y N 85 XV6 C74 H741 SING N N 86 XV6 C75 H751 SING N N 87 XV6 C76 O76 DOUB N N 88 XV6 C76 N76 SING N N 89 XV6 N76 C77 SING N N 90 XV6 N76 HN76 SING N N 91 XV6 N77 C77 DOUB Y N 92 XV6 N77 C78 SING Y N 93 XV6 C77 S79 SING Y N 94 XV6 C78 C79 DOUB Y N 95 XV6 C78 H781 SING N N 96 XV6 S79 C79 SING Y N 97 XV6 C79 H791 SING N N 98 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XV6 SMILES ACDLabs 10.04 "O=C(c1cccc(c1)CN5C(=O)N(Cc3cc(C(=O)Nc2nccs2)ccc3)C(Cc4ccccc4)C(O)C(O)C5Cc6ccccc6)Nc7nccs7" XV6 SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1[C@@H](O)[C@@H](Cc2ccccc2)N(Cc3cccc(c3)C(=O)Nc4sccn4)C(=O)N(Cc5cccc(c5)C(=O)Nc6sccn6)[C@@H]1Cc7ccccc7" XV6 SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](Cc2ccccc2)N(Cc3cccc(c3)C(=O)Nc4sccn4)C(=O)N(Cc5cccc(c5)C(=O)Nc6sccn6)[CH]1Cc7ccccc7" XV6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C[C@@H]2[C@@H]([C@H]([C@H](N(C(=O)N2Cc3cccc(c3)C(=O)Nc4nccs4)Cc5cccc(c5)C(=O)Nc6nccs6)Cc7ccccc7)O)O" XV6 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CC2C(C(C(N(C(=O)N2Cc3cccc(c3)C(=O)Nc4nccs4)Cc5cccc(c5)C(=O)Nc6nccs6)Cc7ccccc7)O)O" XV6 InChI InChI 1.03 "InChI=1S/C41H38N6O5S2/c48-35-33(23-27-9-3-1-4-10-27)46(25-29-13-7-15-31(21-29)37(50)44-39-42-17-19-53-39)41(52)47(34(36(35)49)24-28-11-5-2-6-12-28)26-30-14-8-16-32(22-30)38(51)45-40-43-18-20-54-40/h1-22,33-36,48-49H,23-26H2,(H,42,44,50)(H,43,45,51)/t33-,34-,35+,36+/m1/s1" XV6 InChIKey InChI 1.03 JDALSSGOBMTZEP-NWJWHWDBSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XV6 "SYSTEMATIC NAME" ACDLabs 10.04 "3,3'-{[(4R,5S,6S,7R)-4,7-dibenzyl-5,6-dihydroxy-2-oxo-1,3-diazepane-1,3-diyl]dimethanediyl}bis(N-1,3-thiazol-2-ylbenzamide)" XV6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[[(4R,5S,6S,7R)-5,6-dihydroxy-2-oxo-4,7-bis(phenylmethyl)-3-[[3-(1,3-thiazol-2-ylcarbamoyl)phenyl]methyl]-1,3-diazepan-1-yl]methyl]-N-(1,3-thiazol-2-yl)benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XV6 "Create component" 1999-10-04 RCSB XV6 "Modify descriptor" 2011-06-04 RCSB XV6 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XV6 _pdbx_chem_comp_synonyms.name XV638 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##