data_XV8 # _chem_comp.id XV8 _chem_comp.name "(4M)-4-(1-benzyl-1H-pyrrolo[2,3-b]pyridin-3-yl)-N-methyl-3-nitrobenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H18 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-08 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.403 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XV8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G6R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XV8 C11 C1 C 0 1 N N N N N N -12.124 13.322 52.776 7.147 -2.656 -0.784 C11 XV8 1 XV8 C13 C2 C 0 1 Y N N N N N -13.375 7.863 45.579 -1.090 -0.333 1.058 C13 XV8 2 XV8 C15 C3 C 0 1 Y N N N N N -11.780 9.404 45.040 -0.896 1.281 -0.523 C15 XV8 3 XV8 C16 C4 C 0 1 Y N N N N N -10.883 10.464 44.858 -0.527 2.201 -1.505 C16 XV8 4 XV8 C17 C5 C 0 1 Y N N N N N -10.176 10.535 43.646 -1.501 3.047 -2.002 C17 XV8 5 XV8 C18 C6 C 0 1 Y N N N N N -10.369 9.555 42.608 -2.796 2.952 -1.516 C18 XV8 6 XV8 C20 C7 C 0 1 N N N N N N -13.328 6.551 43.387 -3.530 -0.119 1.596 C20 XV8 7 XV8 C21 C8 C 0 1 Y N N N N N -12.539 5.287 43.478 -4.318 -1.106 0.775 C21 XV8 8 XV8 C22 C9 C 0 1 Y N N N N N -12.908 4.246 44.317 -4.095 -2.463 0.922 C22 XV8 9 XV8 C23 C10 C 0 1 Y N N N N N -10.970 2.958 43.496 -5.765 -2.917 -0.733 C23 XV8 10 XV8 C24 C11 C 0 1 Y N N N N N -10.631 4.029 42.657 -5.991 -1.561 -0.877 C24 XV8 11 XV8 C25 C12 C 0 1 Y N N N N N -12.103 3.067 44.328 -4.819 -3.368 0.169 C25 XV8 12 XV8 C26 C13 C 0 1 Y N N N N N -11.389 5.181 42.644 -5.267 -0.656 -0.123 C26 XV8 13 XV8 C1 C14 C 0 1 Y N N N N N -12.692 9.004 46.059 -0.178 0.243 0.233 C1 XV8 14 XV8 C2 C15 C 0 1 Y N N N N N -11.813 10.906 49.138 2.957 -1.683 -0.464 C2 XV8 15 XV8 C3 C16 C 0 1 Y N N N N N -11.738 10.253 47.936 1.633 -1.362 -0.357 C3 XV8 16 XV8 C4 C17 C 0 1 Y N N N N N -12.866 9.675 47.344 1.255 -0.104 0.118 C4 XV8 17 XV8 C5 C18 C 0 1 Y N N N N N -14.107 9.783 48.037 2.231 0.826 0.485 C5 XV8 18 XV8 C6 C19 C 0 1 Y N N N N N -14.215 10.418 49.288 3.554 0.507 0.379 C6 XV8 19 XV8 C7 C20 C 0 1 Y N N N N N -13.045 10.972 49.817 3.933 -0.752 -0.097 C7 XV8 20 XV8 C8 C21 C 0 1 N N N N N N -13.168 11.724 51.097 5.363 -1.099 -0.212 C8 XV8 21 XV8 N9 N1 N 0 1 N N N N N N -12.113 12.493 51.512 5.728 -2.312 -0.670 N9 XV8 22 XV8 O10 O1 O 0 1 N N N N N N -14.147 11.572 51.802 6.212 -0.289 0.107 O10 XV8 23 XV8 N12 N2 N 0 1 Y N N N N N -12.865 7.599 44.282 -2.309 0.251 0.876 N12 XV8 24 XV8 C14 C22 C 0 1 Y N N N N N -11.914 8.494 43.972 -2.229 1.239 -0.078 C14 XV8 25 XV8 N19 N3 N 0 1 Y N N N N N -11.227 8.534 42.752 -3.122 2.074 -0.592 N19 XV8 26 XV8 N27 N4 N 1 1 N N N N N N -15.374 9.235 47.451 1.829 2.160 0.988 N27 XV8 27 XV8 O28 O2 O 0 1 N N N N N N -15.994 9.974 46.742 2.680 2.971 1.308 O28 XV8 28 XV8 O29 O3 O -1 1 N N N N N N -15.804 8.108 47.731 0.649 2.445 1.082 O29 XV8 29 XV8 H34 H1 H 0 1 N N N N N N -11.161 13.843 52.882 7.245 -3.671 -1.169 H34 XV8 30 XV8 H36 H2 H 0 1 N N N N N N -12.937 14.061 52.723 7.636 -1.960 -1.465 H36 XV8 31 XV8 H35 H3 H 0 1 N N N N N N -12.282 12.665 53.644 7.616 -2.594 0.198 H35 XV8 32 XV8 H37 H4 H 0 1 N N N N N N -14.137 7.301 46.099 -0.882 -1.135 1.750 H37 XV8 33 XV8 H38 H5 H 0 1 N N N N N N -10.739 11.207 45.629 0.490 2.251 -1.866 H38 XV8 34 XV8 H39 H6 H 0 1 N N N N N N -9.474 11.340 43.489 -1.256 3.773 -2.763 H39 XV8 35 XV8 H40 H7 H 0 1 N N N N N N -9.808 9.645 41.689 -3.555 3.614 -1.906 H40 XV8 36 XV8 H41 H8 H 0 1 N N N N N N -14.376 6.324 43.632 -4.133 0.771 1.771 H41 XV8 37 XV8 H42 H9 H 0 1 N N N N N N -13.266 6.925 42.354 -3.264 -0.572 2.552 H42 XV8 38 XV8 H43 H10 H 0 1 N N N N N N -13.782 4.325 44.946 -3.356 -2.815 1.627 H43 XV8 39 XV8 H44 H11 H 0 1 N N N N N N -10.370 2.060 43.505 -6.330 -3.624 -1.322 H44 XV8 40 XV8 H45 H12 H 0 1 N N N N N N -9.767 3.951 42.014 -6.730 -1.208 -1.582 H45 XV8 41 XV8 H46 H13 H 0 1 N N N N N N -12.365 2.248 44.982 -4.644 -4.428 0.283 H46 XV8 42 XV8 H47 H14 H 0 1 N N N N N N -11.111 6.003 42.001 -5.445 0.404 -0.235 H47 XV8 43 XV8 H30 H15 H 0 1 N N N N N N -10.933 11.367 49.562 3.248 -2.657 -0.827 H30 XV8 44 XV8 H31 H16 H 0 1 N N N N N N -10.785 10.183 47.433 0.878 -2.081 -0.641 H31 XV8 45 XV8 H32 H17 H 0 1 N N N N N N -15.156 10.475 49.814 4.308 1.226 0.662 H32 XV8 46 XV8 H33 H18 H 0 1 N N N N N N -11.288 12.507 50.946 5.050 -2.958 -0.924 H33 XV8 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XV8 C1 C4 SING N N 1 XV8 C1 C15 SING Y N 2 XV8 C1 C13 DOUB Y N 3 XV8 C2 C7 DOUB Y N 4 XV8 C2 C3 SING Y N 5 XV8 C3 C4 DOUB Y N 6 XV8 C4 C5 SING Y N 7 XV8 C5 C6 DOUB Y N 8 XV8 C5 N27 SING N N 9 XV8 C6 C7 SING Y N 10 XV8 C7 C8 SING N N 11 XV8 C8 N9 SING N N 12 XV8 C8 O10 DOUB N N 13 XV8 N9 C11 SING N N 14 XV8 N12 C14 SING Y N 15 XV8 N12 C13 SING Y N 16 XV8 N12 C20 SING N N 17 XV8 C14 C15 DOUB Y N 18 XV8 C14 N19 SING Y N 19 XV8 C15 C16 SING Y N 20 XV8 C16 C17 DOUB Y N 21 XV8 C17 C18 SING Y N 22 XV8 C18 N19 DOUB Y N 23 XV8 C20 C21 SING N N 24 XV8 C21 C22 DOUB Y N 25 XV8 C21 C26 SING Y N 26 XV8 C22 C25 SING Y N 27 XV8 C23 C24 SING Y N 28 XV8 C23 C25 DOUB Y N 29 XV8 C24 C26 DOUB Y N 30 XV8 N27 O28 DOUB N N 31 XV8 N27 O29 SING N N 32 XV8 C11 H34 SING N N 33 XV8 C11 H36 SING N N 34 XV8 C11 H35 SING N N 35 XV8 C13 H37 SING N N 36 XV8 C16 H38 SING N N 37 XV8 C17 H39 SING N N 38 XV8 C18 H40 SING N N 39 XV8 C20 H41 SING N N 40 XV8 C20 H42 SING N N 41 XV8 C22 H43 SING N N 42 XV8 C23 H44 SING N N 43 XV8 C24 H45 SING N N 44 XV8 C25 H46 SING N N 45 XV8 C26 H47 SING N N 46 XV8 C2 H30 SING N N 47 XV8 C3 H31 SING N N 48 XV8 C6 H32 SING N N 49 XV8 N9 H33 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XV8 SMILES ACDLabs 12.01 "CNC(=O)c1ccc(c2cn(Cc3ccccc3)c3ncccc32)c(c1)[N+]([O-])=O" XV8 InChI InChI 1.06 "InChI=1S/C22H18N4O3/c1-23-22(27)16-9-10-17(20(12-16)26(28)29)19-14-25(13-15-6-3-2-4-7-15)21-18(19)8-5-11-24-21/h2-12,14H,13H2,1H3,(H,23,27)" XV8 InChIKey InChI 1.06 RLABERRSBCGGQT-UHFFFAOYSA-N XV8 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1ccc(c2cn(Cc3ccccc3)c4ncccc24)c(c1)[N+]([O-])=O" XV8 SMILES CACTVS 3.385 "CNC(=O)c1ccc(c2cn(Cc3ccccc3)c4ncccc24)c(c1)[N+]([O-])=O" XV8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccc(c(c1)[N+](=O)[O-])c2cn(c3c2cccn3)Cc4ccccc4" XV8 SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccc(c(c1)[N+](=O)[O-])c2cn(c3c2cccn3)Cc4ccccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XV8 "SYSTEMATIC NAME" ACDLabs 12.01 "(4M)-4-(1-benzyl-1H-pyrrolo[2,3-b]pyridin-3-yl)-N-methyl-3-nitrobenzamide" XV8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-methyl-3-nitro-4-[1-(phenylmethyl)pyrrolo[2,3-b]pyridin-3-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XV8 "Create component" 2023-06-08 RCSB XV8 "Initial release" 2024-12-18 RCSB #