data_XVC # _chem_comp.id XVC _chem_comp.name 6-azido-6-deoxy-alpha-D-glucopyranose _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H11 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-13 _chem_comp.pdbx_modified_date 2024-03-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 205.169 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XVC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UQV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XVC C1 C1 C 0 1 N N S N N N 211.393 208.342 252.905 -1.142 -1.577 0.276 C1 XVC 1 XVC C2 C2 C 0 1 N N R N N N 210.072 207.669 253.301 -2.230 -0.513 0.445 C2 XVC 2 XVC C3 C3 C 0 1 N N S N N N 210.280 206.776 254.518 -1.799 0.766 -0.279 C3 XVC 3 XVC C4 C4 C 0 1 N N S N N N 211.609 206.032 254.406 -0.447 1.223 0.277 C4 XVC 4 XVC C5 C5 C 0 1 N N R N N N 212.771 207.017 254.295 0.572 0.092 0.115 C5 XVC 5 XVC C6 C6 C 0 1 N N N N N N 213.765 206.528 253.238 1.910 0.519 0.722 C6 XVC 6 XVC N1 N1 N 0 1 N N N N N N 214.697 207.596 252.923 2.916 -0.513 0.462 N1 XVC 7 XVC N2 N2 N 1 1 N N N N N N 215.424 208.515 252.605 3.841 -0.261 -0.124 N2 XVC 8 XVC N3 N3 N -1 1 N N N N N N 216.175 209.426 252.319 4.766 -0.009 -0.711 N3 XVC 9 XVC O2 O1 O 0 1 N N N N N N 209.106 208.624 253.631 -3.455 -0.990 -0.116 O2 XVC 10 XVC O3 O2 O 0 1 N N N N N N 209.232 205.854 254.583 -2.774 1.788 -0.066 O3 XVC 11 XVC O4 O3 O 0 1 N N N N N N 211.788 205.257 255.555 0.000 2.375 -0.441 O4 XVC 12 XVC O5 O4 O 0 1 N N N N N N 212.307 208.294 253.962 0.096 -1.076 0.786 O5 XVC 13 XVC O1 O5 O 0 1 N Y N N N N 211.192 209.691 252.594 -0.994 -1.893 -1.110 O1 XVC 14 XVC HC1 H1 H 0 1 N N N N N N 211.800 207.811 252.032 -1.424 -2.476 0.826 HC1 XVC 15 XVC HC2 H2 H 0 1 N N N N N N 209.729 207.048 252.461 -2.372 -0.303 1.505 HC2 XVC 16 XVC HC3 H3 H 0 1 N N N N N N 210.300 207.404 255.421 -1.707 0.567 -1.347 HC3 XVC 17 XVC HC4 H4 H 0 1 N N N N N N 211.590 205.399 253.507 -0.552 1.471 1.333 HC4 XVC 18 XVC HC5 H5 H 0 1 N N N N N N 213.289 207.047 255.265 0.707 -0.126 -0.944 HC5 XVC 19 XVC HC62 H6 H 0 0 N N N N N N 213.220 206.236 252.328 2.229 1.460 0.273 HC62 XVC 20 XVC HC61 H7 H 0 0 N N N N N N 214.318 205.661 253.628 1.795 0.652 1.798 HC61 XVC 21 XVC HO2 H9 H 0 1 N N N N N N 208.298 208.187 253.873 -3.785 -1.802 0.293 HO2 XVC 22 XVC HO3 H10 H 0 1 N N N N N N 209.351 205.291 255.339 -3.657 1.562 -0.388 HO3 XVC 23 XVC HO4 H11 H 0 1 N N N N N N 211.071 204.639 255.636 -0.601 3.130 -0.386 HO4 XVC 24 XVC H2 H12 H 0 1 N N N N N N 212.021 210.088 252.352 -0.320 -2.562 -1.291 H2 XVC 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XVC N3 N2 DOUB N N 1 XVC N2 N1 DOUB N N 2 XVC C1 C2 SING N N 3 XVC C1 O5 SING N N 4 XVC N1 C6 SING N N 5 XVC C6 C5 SING N N 6 XVC C2 O2 SING N N 7 XVC C2 C3 SING N N 8 XVC O5 C5 SING N N 9 XVC C5 C4 SING N N 10 XVC C4 C3 SING N N 11 XVC C4 O4 SING N N 12 XVC C3 O3 SING N N 13 XVC C1 O1 SING N N 14 XVC C1 HC1 SING N N 15 XVC C2 HC2 SING N N 16 XVC C3 HC3 SING N N 17 XVC C4 HC4 SING N N 18 XVC C5 HC5 SING N N 19 XVC C6 HC62 SING N N 20 XVC C6 HC61 SING N N 21 XVC O2 HO2 SING N N 22 XVC O3 HO3 SING N N 23 XVC O4 HO4 SING N N 24 XVC O1 H2 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XVC SMILES ACDLabs 12.01 "OC1C(O)C(C\N=[N+]=[N-])OC(O)C1O" XVC InChI InChI 1.06 "InChI=1S/C6H11N3O5/c7-9-8-1-2-3(10)4(11)5(12)6(13)14-2/h2-6,10-13H,1H2/t2-,3-,4+,5-,6+/m1/s1" XVC InChIKey InChI 1.06 CMLRUUHRGSJVMD-DVKNGEFBSA-N XVC SMILES_CANONICAL CACTVS 3.385 "O[C@H]1O[C@H](CN=[N+]=[N-])[C@@H](O)[C@H](O)[C@H]1O" XVC SMILES CACTVS 3.385 "O[CH]1O[CH](CN=[N+]=[N-])[CH](O)[CH](O)[CH]1O" XVC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)N=[N+]=[N-]" XVC SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)O)O)O)N=[N+]=[N-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XVC "SYSTEMATIC NAME" ACDLabs 12.01 6-azido-6-deoxy-alpha-D-glucopyranose XVC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(azidomethyl)oxane-2,3,4,5-tetrol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XVC "Create component" 2023-11-13 RCSB XVC "Initial release" 2024-03-27 RCSB #