data_XVK # _chem_comp.id XVK _chem_comp.name "6-(2-{2,3-difluoro-5-[2-(4-methylpiperazin-1-yl)ethyl]phenyl}ethyl)-4-methylpyridin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H28 F2 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-13 _chem_comp.pdbx_modified_date 2023-10-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 374.471 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XVK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FGL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XVK C13 C1 C 0 1 Y N N -7.354 34.902 -40.318 -0.184 -3.185 0.408 C13 XVK 1 XVK C15 C2 C 0 1 Y N N -6.912 33.656 -38.293 -1.375 -1.337 -0.545 C15 XVK 2 XVK C17 C3 C 0 1 N N N -6.049 33.483 -37.054 -2.676 -0.682 -0.929 C17 XVK 3 XVK C22 C4 C 0 1 N N N -4.192 31.980 -35.174 -5.512 -0.198 -0.323 C22 XVK 4 XVK C26 C5 C 0 1 N N N -5.646 30.078 -35.382 -4.852 1.807 0.862 C26 XVK 5 XVK C14 C6 C 0 1 Y N N -6.607 34.704 -39.161 -1.379 -2.583 0.055 C14 XVK 6 XVK C18 C7 C 0 1 N N N -6.344 32.154 -36.356 -3.185 0.165 0.239 C18 XVK 7 XVK C23 C8 C 0 1 N N N -3.027 31.039 -34.867 -6.793 0.499 -0.789 C23 XVK 8 XVK C25 C9 C 0 1 N N N -4.484 29.134 -35.079 -6.134 2.503 0.397 C25 XVK 9 XVK C16 C10 C 0 1 Y N N -7.984 32.797 -38.583 -0.177 -0.693 -0.793 C16 XVK 10 XVK C11 C11 C 0 1 Y N N -8.742 33.011 -39.744 1.018 -1.292 -0.442 C11 XVK 11 XVK C12 C12 C 0 1 Y N N -8.408 34.055 -40.604 1.017 -2.539 0.159 C12 XVK 12 XVK C02 C13 C 0 1 Y N N -14.501 32.228 -39.839 6.296 0.683 -0.480 C02 XVK 13 XVK C03 C14 C 0 1 Y N N -14.777 31.266 -40.810 6.494 2.031 -0.199 C03 XVK 14 XVK C04 C15 C 0 1 Y N N -13.756 30.416 -41.218 5.457 2.762 0.352 C04 XVK 15 XVK C05 C16 C 0 1 Y N N -12.481 30.533 -40.674 4.253 2.118 0.604 C05 XVK 16 XVK C06 C17 C 0 1 Y N N -12.239 31.520 -39.721 4.126 0.778 0.301 C06 XVK 17 XVK C07 C18 C 0 1 N N N -14.055 29.363 -42.238 5.631 4.225 0.672 C07 XVK 18 XVK C08 C19 C 0 1 N N N -10.875 31.722 -39.086 2.822 0.074 0.572 C08 XVK 19 XVK C09 C20 C 0 1 N N N -9.909 32.140 -40.177 2.322 -0.588 -0.714 C09 XVK 20 XVK C27 C21 C 0 1 N N N -2.362 28.907 -33.982 -8.461 2.141 -0.166 C27 XVK 21 XVK F12 F1 F 0 1 N N N -9.120 34.267 -41.730 2.184 -3.125 0.502 F12 XVK 22 XVK F13 F2 F 0 1 N N N -7.073 35.909 -41.165 -0.188 -4.400 0.999 F13 XVK 23 XVK N01 N1 N 0 1 Y N N -13.252 32.327 -39.342 5.131 0.106 -0.230 N01 XVK 24 XVK N02 N2 N 0 1 N N N -15.452 33.097 -39.399 7.330 -0.064 -1.034 N02 XVK 25 XVK N21 N3 N 0 1 N N N -5.168 31.306 -36.043 -4.453 0.804 -0.135 N21 XVK 26 XVK N24 N4 N 0 1 N N N -3.508 29.805 -34.221 -7.192 1.502 0.209 N24 XVK 27 XVK H1 H1 H 0 1 N N N -4.989 33.506 -37.349 -2.519 -0.045 -1.799 H1 XVK 28 XVK H2 H2 H 0 1 N N N -6.254 34.308 -36.356 -3.412 -1.449 -1.169 H2 XVK 29 XVK H3 H3 H 0 1 N N N -3.811 32.878 -35.682 -5.699 -0.711 0.620 H3 XVK 30 XVK H4 H4 H 0 1 N N N -4.682 32.272 -34.233 -5.199 -0.922 -1.075 H4 XVK 31 XVK H5 H5 H 0 1 N N N -6.146 30.347 -34.440 -4.058 2.544 0.974 H5 XVK 32 XVK H6 H6 H 0 1 N N N -6.361 29.568 -36.044 -5.032 1.317 1.819 H6 XVK 33 XVK H7 H7 H 0 1 N N N -5.785 35.367 -38.934 -2.315 -3.086 0.248 H7 XVK 34 XVK H8 H8 H 0 1 N N N -6.858 32.378 -35.410 -3.342 -0.472 1.109 H8 XVK 35 XVK H9 H9 H 0 1 N N N -7.013 31.573 -37.008 -2.449 0.932 0.479 H9 XVK 36 XVK H10 H10 H 0 1 N N N -2.516 30.779 -35.806 -6.614 0.989 -1.745 H10 XVK 37 XVK H11 H11 H 0 1 N N N -2.321 31.547 -34.194 -7.588 -0.239 -0.901 H11 XVK 38 XVK H12 H12 H 0 1 N N N -4.866 28.239 -34.566 -6.447 3.228 1.148 H12 XVK 39 XVK H13 H13 H 0 1 N N N -3.999 28.838 -36.021 -5.946 3.016 -0.547 H13 XVK 40 XVK H14 H14 H 0 1 N N N -8.223 31.980 -37.919 -0.176 0.280 -1.262 H14 XVK 41 XVK H15 H15 H 0 1 N N N -15.766 31.183 -41.237 7.444 2.500 -0.407 H15 XVK 42 XVK H16 H16 H 0 1 N N N -11.690 29.868 -40.986 3.424 2.661 1.035 H16 XVK 43 XVK H17 H17 H 0 1 N N N -13.873 29.765 -43.245 5.345 4.822 -0.193 H17 XVK 44 XVK H18 H18 H 0 1 N N N -13.404 28.493 -42.068 4.999 4.489 1.520 H18 XVK 45 XVK H19 H19 H 0 1 N N N -15.108 29.057 -42.151 6.674 4.421 0.920 H19 XVK 46 XVK H20 H20 H 0 1 N N N -10.535 30.783 -38.625 2.973 -0.688 1.337 H20 XVK 47 XVK H21 H21 H 0 1 N N N -10.933 32.507 -38.318 2.084 0.797 0.919 H21 XVK 48 XVK H22 H22 H 0 1 N N N -10.480 32.697 -40.935 3.060 -1.311 -1.061 H22 XVK 49 XVK H23 H23 H 0 1 N N N -9.496 31.225 -40.627 2.172 0.174 -1.479 H23 XVK 50 XVK H24 H24 H 0 1 N N N -1.628 29.412 -33.337 -9.243 1.384 -0.233 H24 XVK 51 XVK H25 H25 H 0 1 N N N -2.713 27.988 -33.489 -8.733 2.878 0.589 H25 XVK 52 XVK H26 H26 H 0 1 N N N -1.891 28.651 -34.942 -8.348 2.633 -1.132 H26 XVK 53 XVK H27 H27 H 0 1 N N N -15.050 33.719 -38.727 7.195 -1.003 -1.235 H27 XVK 54 XVK H28 H28 H 0 1 N N N -15.805 33.624 -40.172 8.185 0.354 -1.219 H28 XVK 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XVK C07 C04 SING N N 1 XVK F12 C12 SING N N 2 XVK C04 C03 DOUB Y N 3 XVK C04 C05 SING Y N 4 XVK F13 C13 SING N N 5 XVK C03 C02 SING Y N 6 XVK C05 C06 DOUB Y N 7 XVK C12 C13 DOUB Y N 8 XVK C12 C11 SING Y N 9 XVK C13 C14 SING Y N 10 XVK C09 C11 SING N N 11 XVK C09 C08 SING N N 12 XVK C02 N02 SING N N 13 XVK C02 N01 DOUB Y N 14 XVK C11 C16 DOUB Y N 15 XVK C06 N01 SING Y N 16 XVK C06 C08 SING N N 17 XVK C14 C15 DOUB Y N 18 XVK C16 C15 SING Y N 19 XVK C15 C17 SING N N 20 XVK C17 C18 SING N N 21 XVK C18 N21 SING N N 22 XVK N21 C26 SING N N 23 XVK N21 C22 SING N N 24 XVK C26 C25 SING N N 25 XVK C22 C23 SING N N 26 XVK C25 N24 SING N N 27 XVK C23 N24 SING N N 28 XVK N24 C27 SING N N 29 XVK C17 H1 SING N N 30 XVK C17 H2 SING N N 31 XVK C22 H3 SING N N 32 XVK C22 H4 SING N N 33 XVK C26 H5 SING N N 34 XVK C26 H6 SING N N 35 XVK C14 H7 SING N N 36 XVK C18 H8 SING N N 37 XVK C18 H9 SING N N 38 XVK C23 H10 SING N N 39 XVK C23 H11 SING N N 40 XVK C25 H12 SING N N 41 XVK C25 H13 SING N N 42 XVK C16 H14 SING N N 43 XVK C03 H15 SING N N 44 XVK C05 H16 SING N N 45 XVK C07 H17 SING N N 46 XVK C07 H18 SING N N 47 XVK C07 H19 SING N N 48 XVK C08 H20 SING N N 49 XVK C08 H21 SING N N 50 XVK C09 H22 SING N N 51 XVK C09 H23 SING N N 52 XVK C27 H24 SING N N 53 XVK C27 H25 SING N N 54 XVK C27 H26 SING N N 55 XVK N02 H27 SING N N 56 XVK N02 H28 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XVK SMILES ACDLabs 12.01 "Cc1cc(nc(N)c1)CCc1cc(CCN2CCN(C)CC2)cc(F)c1F" XVK InChI InChI 1.06 "InChI=1S/C21H28F2N4/c1-15-11-18(25-20(24)12-15)4-3-17-13-16(14-19(22)21(17)23)5-6-27-9-7-26(2)8-10-27/h11-14H,3-10H2,1-2H3,(H2,24,25)" XVK InChIKey InChI 1.06 DKLAHKWNKRMLJW-UHFFFAOYSA-N XVK SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)CCc2cc(F)c(F)c(CCc3cc(C)cc(N)n3)c2" XVK SMILES CACTVS 3.385 "CN1CCN(CC1)CCc2cc(F)c(F)c(CCc3cc(C)cc(N)n3)c2" XVK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(c1)N)CCc2cc(cc(c2F)F)CCN3CCN(CC3)C" XVK SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(c1)N)CCc2cc(cc(c2F)F)CCN3CCN(CC3)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XVK "SYSTEMATIC NAME" ACDLabs 12.01 "6-(2-{2,3-difluoro-5-[2-(4-methylpiperazin-1-yl)ethyl]phenyl}ethyl)-4-methylpyridin-2-amine" XVK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[2-[2,3-bis(fluoranyl)-5-[2-(4-methylpiperazin-1-yl)ethyl]phenyl]ethyl]-4-methyl-pyridin-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XVK "Create component" 2022-12-13 RCSB XVK "Initial release" 2023-10-11 RCSB #