data_XVM # _chem_comp.id XVM _chem_comp.name "diethyl [(4-{(2S,3R)-4-{[(2H-1,3-benzodioxol-5-yl)sulfonyl][(2S)-2-methylbutyl]amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H49 N2 O13 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-15 _chem_comp.pdbx_modified_date 2022-01-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 756.797 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XVM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LED _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XVM C13 C1 C 0 1 N N R 71.944 57.985 15.113 1.530 1.007 1.422 C13 XVM 1 XVM C15 C2 C 0 1 N N S 71.572 58.328 16.566 0.299 1.272 0.553 C15 XVM 2 XVM C17 C3 C 0 1 N N N 73.509 59.014 18.080 -0.376 -1.069 0.509 C17 XVM 3 XVM C20 C4 C 0 1 N N R 75.154 59.957 19.671 -1.035 -3.359 0.641 C20 XVM 4 XVM C21 C5 C 0 1 N N N 76.682 60.462 19.330 -2.563 -3.467 0.841 C21 XVM 5 XVM C24 C6 C 0 1 N N R 75.413 62.166 20.240 -2.023 -5.362 -0.355 C24 XVM 6 XVM C26 C7 C 0 1 N N N 73.078 62.136 19.927 -0.776 -5.498 -2.346 C26 XVM 7 XVM C28 C8 C 0 1 N N N 70.160 58.961 16.642 -0.871 1.699 1.442 C28 XVM 8 XVM C01 C9 C 0 1 Y N N 67.266 52.288 13.170 7.973 1.233 -1.730 C01 XVM 9 XVM C02 C10 C 0 1 Y N N 68.404 51.659 13.878 6.814 2.000 -1.828 C02 XVM 10 XVM C03 C11 C 0 1 Y N N 69.289 52.502 14.856 5.914 2.026 -0.776 C03 XVM 11 XVM C04 C12 C 0 1 Y N N 68.967 53.964 15.084 6.166 1.292 0.369 C04 XVM 12 XVM C05 C13 C 0 1 Y N N 67.786 54.628 14.350 7.316 0.532 0.467 C05 XVM 13 XVM C06 C14 C 0 1 Y N N 66.931 53.787 13.392 8.219 0.501 -0.580 C06 XVM 14 XVM C11 C15 C 0 1 N N N 72.103 54.536 14.559 3.944 -1.145 1.916 C11 XVM 15 XVM C12 C16 C 0 1 N N N 71.056 56.862 14.561 2.700 0.580 0.533 C12 XVM 16 XVM C23 C17 C 0 1 N N S 74.760 60.791 20.636 -0.663 -4.650 -0.113 C23 XVM 17 XVM C25 C18 C 0 1 N N N 73.281 61.056 20.656 -0.222 -4.287 -1.554 C25 XVM 18 XVM C29 C19 C 0 1 Y N N 69.925 59.423 18.079 -2.046 2.078 0.579 C29 XVM 19 XVM C30 C20 C 0 1 Y N N 69.589 58.403 19.134 -2.193 3.383 0.147 C30 XVM 20 XVM C31 C21 C 0 1 Y N N 69.361 58.852 20.582 -3.269 3.733 -0.645 C31 XVM 21 XVM C32 C22 C 0 1 Y N N 69.472 60.351 20.949 -4.204 2.774 -1.006 C32 XVM 22 XVM C33 C23 C 0 1 Y N N 69.816 61.384 19.886 -4.055 1.465 -0.571 C33 XVM 23 XVM C34 C24 C 0 1 Y N N 70.044 60.939 18.451 -2.973 1.119 0.216 C34 XVM 24 XVM C37 C25 C 0 1 N N N 74.174 52.434 13.875 4.106 -4.570 0.169 C37 XVM 25 XVM C38 C26 C 0 1 N N S 73.605 54.811 14.673 4.102 -2.145 0.768 C38 XVM 26 XVM C39 C27 C 0 1 N N N 74.346 53.963 13.643 4.074 -3.569 1.326 C39 XVM 27 XVM C40 C28 C 0 1 N N N 74.101 54.481 16.101 5.435 -1.900 0.059 C40 XVM 28 XVM C42 C29 C 0 1 N N N 70.473 61.094 22.933 -6.187 2.076 -2.116 C42 XVM 29 XVM C46 C30 C 0 1 N N N 67.946 62.304 24.466 -9.278 0.070 -0.144 C46 XVM 30 XVM C47 C31 C 0 1 N N N 70.483 59.141 26.705 -6.784 0.936 1.860 C47 XVM 31 XVM C48 C32 C 0 1 N N N 68.688 63.664 24.230 -10.085 -1.046 -0.812 C48 XVM 32 XVM C49 C33 C 0 1 N N N 69.587 57.934 26.913 -5.631 0.500 2.767 C49 XVM 33 XVM C51 C34 C 0 1 N N N 67.694 50.195 12.348 7.762 1.906 -3.848 C51 XVM 34 XVM N10 N1 N 0 1 N N N 71.333 55.569 15.292 3.842 0.211 1.372 N10 XVM 35 XVM N16 N2 N 0 1 N N N 72.508 59.311 17.039 -0.060 0.050 -0.172 N16 XVM 36 XVM O08 O1 O 0 1 N N N 69.255 56.031 16.884 5.717 0.847 2.846 O08 XVM 37 XVM O09 O2 O 0 1 N N N 70.483 54.181 17.380 4.389 2.601 1.660 O09 XVM 38 XVM O14 O3 O 0 1 N N N 71.787 59.100 14.335 1.879 2.198 2.129 O14 XVM 39 XVM O18 O4 O 0 1 N N N 73.608 57.928 18.556 -0.365 -1.065 1.724 O18 XVM 40 XVM O19 O5 O 0 1 N N N 74.373 60.117 18.489 -0.706 -2.192 -0.157 O19 XVM 41 XVM O22 O6 O 0 1 N N N 76.571 61.791 19.246 -3.015 -4.320 -0.229 O22 XVM 42 XVM O27 O7 O 0 1 N N N 74.514 62.842 19.660 -2.014 -5.841 -1.706 O27 XVM 43 XVM O35 O8 O 0 1 N N N 68.464 50.265 13.470 6.804 2.620 -3.044 O35 XVM 44 XVM O36 O9 O 0 1 N N N 69.264 60.765 22.296 -5.265 3.116 -1.784 O36 XVM 45 XVM O41 O10 O 0 1 N N N 66.706 51.372 12.424 8.686 1.370 -2.886 O41 XVM 46 XVM O44 O11 O 0 1 N N N 68.702 61.454 25.278 -8.261 0.523 -1.039 O44 XVM 47 XVM O45 O12 O 0 1 N N N 70.535 59.451 25.333 -6.282 1.210 0.550 O45 XVM 48 XVM O50 O13 O 0 1 N N N 71.212 61.922 25.463 -7.968 2.905 -0.258 O50 XVM 49 XVM P43 P1 P 0 1 N N N 70.255 61.029 24.839 -7.221 1.694 -0.665 P43 XVM 50 XVM S07 S1 S 0 1 N N N 70.028 54.965 16.244 5.019 1.328 1.706 S07 XVM 51 XVM H131 H1 H 0 0 N N N 72.989 57.642 15.095 1.307 0.213 2.135 H131 XVM 52 XVM H151 H2 H 0 0 N N N 71.603 57.418 17.183 0.521 2.066 -0.160 H151 XVM 53 XVM H201 H3 H 0 0 N N N 75.193 58.906 19.994 -0.526 -3.319 1.603 H201 XVM 54 XVM H211 H4 H 0 0 N N N 77.031 60.038 18.377 -2.787 -3.918 1.808 H211 XVM 55 XVM H212 H5 H 0 0 N N N 77.377 60.178 20.134 -3.026 -2.483 0.766 H212 XVM 56 XVM H241 H6 H 0 0 N N N 75.837 62.643 21.136 -2.191 -6.169 0.359 H241 XVM 57 XVM H262 H7 H 0 0 N N N 72.416 62.830 20.465 -0.942 -5.224 -3.388 H262 XVM 58 XVM H261 H8 H 0 0 N N N 72.616 61.857 18.969 -0.086 -6.339 -2.282 H261 XVM 59 XVM H282 H9 H 0 0 N N N 70.100 59.821 15.959 -1.151 0.872 2.095 H282 XVM 60 XVM H281 H10 H 0 0 N N N 69.401 58.216 16.361 -0.573 2.555 2.047 H281 XVM 61 XVM H031 H11 H 0 0 N N N 70.124 52.044 15.365 5.014 2.619 -0.850 H031 XVM 62 XVM H051 H12 H 0 0 N N N 67.562 55.673 14.508 7.509 -0.039 1.363 H051 XVM 63 XVM H061 H13 H 0 0 N N N 66.098 54.238 12.873 9.117 -0.094 -0.501 H061 XVM 64 XVM H112 H14 H 0 0 N N N 71.811 54.550 13.499 3.041 -1.379 2.480 H112 XVM 65 XVM H111 H15 H 0 0 N N N 71.882 53.547 14.987 4.811 -1.208 2.574 H111 XVM 66 XVM H121 H16 H 0 0 N N N 69.999 57.136 14.695 2.402 -0.276 -0.073 H121 XVM 67 XVM H122 H17 H 0 0 N N N 71.266 56.726 13.490 2.980 1.406 -0.120 H122 XVM 68 XVM H231 H18 H 0 0 N N N 75.110 60.493 21.635 0.058 -5.266 0.425 H231 XVM 69 XVM H251 H19 H 0 0 N N N 72.941 61.226 21.688 0.863 -4.231 -1.630 H251 XVM 70 XVM H252 H20 H 0 0 N N N 72.737 60.202 20.227 -0.686 -3.357 -1.883 H252 XVM 71 XVM H301 H21 H 0 0 N N N 69.509 57.358 18.872 -1.464 4.129 0.428 H301 XVM 72 XVM H311 H22 H 0 0 N N N 69.124 58.124 21.344 -3.384 4.753 -0.982 H311 XVM 73 XVM H331 H23 H 0 0 N N N 69.898 62.428 20.150 -4.781 0.716 -0.851 H331 XVM 74 XVM H341 H24 H 0 0 N N N 70.287 61.666 17.690 -2.854 0.099 0.551 H341 XVM 75 XVM H373 H25 H 0 0 N N N 74.729 51.881 13.103 4.086 -5.585 0.566 H373 XVM 76 XVM H372 H26 H 0 0 N N N 74.564 52.168 14.869 3.237 -4.413 -0.471 H372 XVM 77 XVM H371 H27 H 0 0 N N N 73.107 52.172 13.817 5.016 -4.425 -0.412 H371 XVM 78 XVM H381 H28 H 0 0 N N N 73.793 55.875 14.467 3.283 -2.016 0.060 H381 XVM 79 XVM H392 H29 H 0 0 N N N 75.417 54.207 13.694 3.163 -3.714 1.907 H392 XVM 80 XVM H391 H30 H 0 0 N N N 73.961 54.211 12.643 4.942 -3.726 1.966 H391 XVM 81 XVM H401 H31 H 0 0 N N N 73.558 55.100 16.830 5.589 -2.669 -0.699 H401 XVM 82 XVM H402 H32 H 0 0 N N N 73.920 53.417 16.315 5.419 -0.919 -0.417 H402 XVM 83 XVM H403 H33 H 0 0 N N N 75.178 54.691 16.172 6.246 -1.938 0.786 H403 XVM 84 XVM H422 H34 H 0 0 N N N 71.250 60.376 22.631 -6.823 2.404 -2.939 H422 XVM 85 XVM H421 H35 H 0 0 N N N 70.776 62.109 22.636 -5.637 1.184 -2.416 H421 XVM 86 XVM H462 H36 H 0 0 N N N 66.980 62.501 24.953 -9.941 0.900 0.102 H462 XVM 87 XVM H461 H37 H 0 0 N N N 67.774 61.815 23.496 -8.818 -0.310 0.767 H461 XVM 88 XVM H472 H38 H 0 0 N N N 71.496 58.914 27.069 -7.525 0.139 1.806 H472 XVM 89 XVM H471 H39 H 0 0 N N N 70.078 60.000 27.261 -7.247 1.835 2.267 H471 XVM 90 XVM H481 H40 H 0 0 N N N 68.072 64.312 23.589 -9.422 -1.875 -1.059 H481 XVM 91 XVM H483 H41 H 0 0 N N N 68.860 64.160 25.196 -10.861 -1.391 -0.130 H483 XVM 92 XVM H482 H42 H 0 0 N N N 69.654 63.474 23.739 -10.546 -0.665 -1.724 H482 XVM 93 XVM H491 H43 H 0 0 N N N 69.544 57.689 27.984 -4.890 1.298 2.821 H491 XVM 94 XVM H492 H44 H 0 0 N N N 68.575 58.162 26.548 -6.014 0.292 3.766 H492 XVM 95 XVM H493 H45 H 0 0 N N N 69.993 57.076 26.357 -5.168 -0.399 2.360 H493 XVM 96 XVM H512 H46 H 0 0 N N N 67.147 49.241 12.321 7.270 1.103 -4.396 H512 XVM 97 XVM H511 H47 H 0 0 N N N 68.322 50.283 11.449 8.272 2.582 -4.534 H511 XVM 98 XVM H161 H48 H 0 0 N N N 72.479 60.231 16.647 -0.069 0.047 -1.142 H161 XVM 99 XVM H141 H49 H 0 0 N N N 72.334 59.800 14.671 2.091 2.948 1.556 H141 XVM 100 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XVM C51 O41 SING N N 1 XVM C51 O35 SING N N 2 XVM O41 C01 SING N N 3 XVM C01 C06 DOUB Y N 4 XVM C01 C02 SING Y N 5 XVM C06 C05 SING Y N 6 XVM O35 C02 SING N N 7 XVM C39 C37 SING N N 8 XVM C39 C38 SING N N 9 XVM C02 C03 DOUB Y N 10 XVM O14 C13 SING N N 11 XVM C05 C04 DOUB Y N 12 XVM C11 C38 SING N N 13 XVM C11 N10 SING N N 14 XVM C12 C13 SING N N 15 XVM C12 N10 SING N N 16 XVM C38 C40 SING N N 17 XVM C03 C04 SING Y N 18 XVM C04 S07 SING N N 19 XVM C13 C15 SING N N 20 XVM N10 S07 SING N N 21 XVM S07 O08 DOUB N N 22 XVM S07 O09 DOUB N N 23 XVM C15 C28 SING N N 24 XVM C15 N16 SING N N 25 XVM C28 C29 SING N N 26 XVM N16 C17 SING N N 27 XVM C29 C34 DOUB Y N 28 XVM C29 C30 SING Y N 29 XVM C17 O19 SING N N 30 XVM C17 O18 DOUB N N 31 XVM C34 C33 SING Y N 32 XVM O19 C20 SING N N 33 XVM C30 C31 DOUB Y N 34 XVM O22 C21 SING N N 35 XVM O22 C24 SING N N 36 XVM C21 C20 SING N N 37 XVM O27 C26 SING N N 38 XVM O27 C24 SING N N 39 XVM C20 C23 SING N N 40 XVM C33 C32 DOUB Y N 41 XVM C26 C25 SING N N 42 XVM C24 C23 SING N N 43 XVM C31 C32 SING Y N 44 XVM C23 C25 SING N N 45 XVM C32 O36 SING N N 46 XVM O36 C42 SING N N 47 XVM C42 P43 SING N N 48 XVM C48 C46 SING N N 49 XVM C46 O44 SING N N 50 XVM P43 O44 SING N N 51 XVM P43 O45 SING N N 52 XVM P43 O50 DOUB N N 53 XVM O45 C47 SING N N 54 XVM C47 C49 SING N N 55 XVM C13 H131 SING N N 56 XVM C15 H151 SING N N 57 XVM C20 H201 SING N N 58 XVM C21 H211 SING N N 59 XVM C21 H212 SING N N 60 XVM C24 H241 SING N N 61 XVM C26 H262 SING N N 62 XVM C26 H261 SING N N 63 XVM C28 H282 SING N N 64 XVM C28 H281 SING N N 65 XVM C03 H031 SING N N 66 XVM C05 H051 SING N N 67 XVM C06 H061 SING N N 68 XVM C11 H112 SING N N 69 XVM C11 H111 SING N N 70 XVM C12 H121 SING N N 71 XVM C12 H122 SING N N 72 XVM C23 H231 SING N N 73 XVM C25 H251 SING N N 74 XVM C25 H252 SING N N 75 XVM C30 H301 SING N N 76 XVM C31 H311 SING N N 77 XVM C33 H331 SING N N 78 XVM C34 H341 SING N N 79 XVM C37 H373 SING N N 80 XVM C37 H372 SING N N 81 XVM C37 H371 SING N N 82 XVM C38 H381 SING N N 83 XVM C39 H392 SING N N 84 XVM C39 H391 SING N N 85 XVM C40 H401 SING N N 86 XVM C40 H402 SING N N 87 XVM C40 H403 SING N N 88 XVM C42 H422 SING N N 89 XVM C42 H421 SING N N 90 XVM C46 H462 SING N N 91 XVM C46 H461 SING N N 92 XVM C47 H472 SING N N 93 XVM C47 H471 SING N N 94 XVM C48 H481 SING N N 95 XVM C48 H483 SING N N 96 XVM C48 H482 SING N N 97 XVM C49 H491 SING N N 98 XVM C49 H492 SING N N 99 XVM C49 H493 SING N N 100 XVM C51 H512 SING N N 101 XVM C51 H511 SING N N 102 XVM N16 H161 SING N N 103 XVM O14 H141 SING N N 104 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XVM SMILES ACDLabs 12.01 "C(C(Cc1ccc(cc1)OCP(OCC)(OCC)=O)NC(OC2C3C(OC2)OCC3)=O)(CN(CC(C)CC)S(c4cc5c(cc4)OCO5)(=O)=O)O" XVM InChI InChI 1.03 "InChI=1S/C34H49N2O13PS/c1-5-23(4)18-36(51(40,41)26-12-13-30-31(17-26)45-21-44-30)19-29(37)28(35-34(38)49-32-20-43-33-27(32)14-15-42-33)16-24-8-10-25(11-9-24)46-22-50(39,47-6-2)48-7-3/h8-13,17,23,27-29,32-33,37H,5-7,14-16,18-22H2,1-4H3,(H,35,38)/t23-,27-,28-,29+,32-,33+/m0/s1" XVM InChIKey InChI 1.03 UIEGADIPTCNJOI-ALEGCUKPSA-N XVM SMILES_CANONICAL CACTVS 3.385 "CCO[P](=O)(COc1ccc(C[C@H](NC(=O)O[C@H]2CO[C@H]3OCC[C@@H]23)[C@H](O)CN(C[C@@H](C)CC)[S](=O)(=O)c4ccc5OCOc5c4)cc1)OCC" XVM SMILES CACTVS 3.385 "CCO[P](=O)(COc1ccc(C[CH](NC(=O)O[CH]2CO[CH]3OCC[CH]23)[CH](O)CN(C[CH](C)CC)[S](=O)(=O)c4ccc5OCOc5c4)cc1)OCC" XVM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)CN(C[C@H]([C@H](Cc1ccc(cc1)OCP(=O)(OCC)OCC)NC(=O)O[C@H]2CO[C@@H]3[C@H]2CCO3)O)S(=O)(=O)c4ccc5c(c4)OCO5" XVM SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)CN(CC(C(Cc1ccc(cc1)OCP(=O)(OCC)OCC)NC(=O)OC2COC3C2CCO3)O)S(=O)(=O)c4ccc5c(c4)OCO5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XVM "SYSTEMATIC NAME" ACDLabs 12.01 "diethyl [(4-{(2S,3R)-4-{[(2H-1,3-benzodioxol-5-yl)sulfonyl][(2S)-2-methylbutyl]amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate" XVM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},4~{R},6~{a}~{R})-2,3,3~{a},4,5,6~{a}-hexahydrofuro[2,3-b]furan-4-yl] ~{N}-[(2~{S},3~{R})-4-[1,3-benzodioxol-5-ylsulfonyl-[(2~{S})-2-methylbutyl]amino]-1-[4-(diethoxyphosphorylmethoxy)phenyl]-3-oxidanyl-butan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XVM "Create component" 2021-01-15 RCSB XVM "Initial release" 2022-01-26 RCSB ##