data_XVP # _chem_comp.id XVP _chem_comp.name "diethyl ({4-[(2S,3R)-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxy-4-({[4-(hydroxymethyl)phenyl]sulfonyl}[(2S)-2-methylbutyl]amino)butyl]phenoxy}methyl)phosphonate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H51 N2 O12 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-15 _chem_comp.pdbx_modified_date 2022-01-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 742.814 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XVP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LEC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XVP C13 C1 C 0 1 N N R 20.515 -0.586 15.114 1.617 1.120 1.271 C13 XVP 1 XVP C15 C2 C 0 1 N N S 20.148 -0.231 16.553 0.369 1.339 0.412 C15 XVP 2 XVP C17 C3 C 0 1 N N N 22.096 0.275 18.125 -0.285 -1.008 0.476 C17 XVP 3 XVP C20 C4 C 0 1 N N R 23.753 1.237 19.647 -0.921 -3.296 0.713 C20 XVP 4 XVP C21 C5 C 0 1 N N N 25.203 1.783 19.099 -2.444 -3.408 0.943 C21 XVP 5 XVP C24 C6 C 0 1 N N R 24.037 3.507 20.174 -1.906 -5.347 -0.182 C24 XVP 6 XVP C26 C7 C 0 1 N N N 21.712 3.609 19.926 -0.691 -5.554 -2.187 C26 XVP 7 XVP C28 C8 C 0 1 N N N 18.804 0.512 16.553 -0.789 1.792 1.303 C28 XVP 8 XVP C01 C9 C 0 1 Y N N 15.615 -6.175 13.601 7.997 1.274 -1.994 C01 XVP 9 XVP C02 C10 C 0 1 Y N N 15.347 -4.690 13.801 6.839 2.020 -2.103 C02 XVP 10 XVP C03 C11 C 0 1 Y N N 16.298 -3.835 14.617 5.956 2.084 -1.041 C03 XVP 11 XVP C04 C12 C 0 1 Y N N 17.513 -4.529 15.216 6.232 1.401 0.129 C04 XVP 12 XVP C05 C13 C 0 1 Y N N 17.782 -5.994 15.044 7.391 0.656 0.238 C05 XVP 13 XVP C06 C14 C 0 1 Y N N 16.828 -6.850 14.215 8.274 0.592 -0.824 C06 XVP 14 XVP C11 C15 C 0 1 N N N 20.560 -3.986 14.245 4.058 -0.989 1.813 C11 XVP 15 XVP C12 C16 C 0 1 N N N 19.511 -1.594 14.587 2.776 0.667 0.380 C12 XVP 16 XVP C23 C17 C 0 1 N N S 23.382 2.130 20.569 -0.549 -4.614 0.007 C23 XVP 17 XVP C25 C18 C 0 1 N N N 21.903 2.454 20.548 -0.135 -4.307 -1.455 C25 XVP 18 XVP C29 C19 C 0 1 Y N N 18.532 0.958 18.023 -1.982 2.125 0.444 C29 XVP 19 XVP C30 C20 C 0 1 Y N N 18.188 -0.131 19.022 -2.148 3.410 -0.039 C30 XVP 20 XVP C31 C21 C 0 1 Y N N 17.931 0.241 20.489 -3.240 3.718 -0.826 C31 XVP 21 XVP C32 C22 C 0 1 Y N N 18.003 1.695 20.961 -4.172 2.737 -1.132 C32 XVP 22 XVP C33 C23 C 0 1 Y N N 18.376 2.779 19.965 -4.004 1.448 -0.646 C33 XVP 23 XVP C34 C24 C 0 1 Y N N 18.622 2.413 18.484 -2.907 1.144 0.136 C34 XVP 24 XVP C36 C25 C 0 1 N N N 22.578 -6.205 13.938 4.223 -4.482 0.206 C36 XVP 25 XVP C37 C26 C 0 1 N N S 22.106 -3.773 14.353 4.206 -2.033 0.705 C37 XVP 26 XVP C38 C27 C 0 1 N N N 22.736 -4.776 13.378 4.201 -3.434 1.321 C38 XVP 27 XVP C39 C28 C 0 1 N N N 22.600 -4.050 15.758 5.525 -1.807 -0.036 C39 XVP 28 XVP C40 C29 C 0 1 N N N 14.642 -7.016 12.749 8.957 1.199 -3.154 C40 XVP 29 XVP C41 C30 C 0 1 N N N 18.902 2.572 22.956 -6.167 1.977 -2.179 C41 XVP 30 XVP C45 C31 C 0 1 N N N 21.120 2.933 24.998 -9.207 0.028 -0.075 C45 XVP 31 XVP C46 C32 C 0 1 N N N 18.431 0.421 26.669 -6.688 0.997 1.850 C46 XVP 32 XVP C47 C33 C 0 1 N N N 22.010 4.034 24.357 -10.014 -1.121 -0.683 C47 XVP 33 XVP C48 C34 C 0 1 N N N 17.627 -0.925 26.543 -5.516 0.609 2.755 C48 XVP 34 XVP N10 N1 N 0 1 N N N 19.839 -2.958 15.086 3.935 0.343 1.215 N10 XVP 35 XVP N16 N2 N 0 1 N N N 21.125 0.676 17.106 0.010 0.085 -0.256 N16 XVP 36 XVP O08 O1 O 0 1 N N N 17.823 -2.443 16.757 5.827 1.055 2.630 O08 XVP 37 XVP O09 O2 O 0 1 N N N 19.216 -4.373 17.235 4.464 2.747 1.395 O09 XVP 38 XVP O14 O3 O 0 1 N N N 20.291 0.505 14.259 1.967 2.343 1.922 O14 XVP 39 XVP O18 O4 O 0 1 N N N 22.154 -0.811 18.581 -0.254 -0.953 1.689 O18 XVP 40 XVP O19 O5 O 0 1 N N N 23.008 1.349 18.452 -0.615 -2.160 -0.138 O19 XVP 41 XVP O22 O6 O 0 1 N N N 24.983 3.103 18.990 -2.905 -4.309 -0.083 O22 XVP 42 XVP O27 O7 O 0 1 N N N 23.158 4.320 19.780 -1.915 -5.881 -1.512 O27 XVP 43 XVP O35 O8 O 0 1 N N N 17.742 1.983 22.358 -5.248 3.037 -1.905 O35 XVP 44 XVP O43 O9 O 0 1 N N N 19.825 3.418 25.366 -8.208 0.452 -1.005 O43 XVP 45 XVP O44 O10 O 0 1 N N N 18.825 0.857 25.348 -6.210 1.221 0.522 O44 XVP 46 XVP O49 O11 O 0 1 N N N 17.232 2.948 25.101 -7.925 2.867 -0.327 O49 XVP 47 XVP O50 O12 O 0 1 N N N 15.121 -6.946 11.397 9.912 2.257 -3.051 O50 XVP 48 XVP P42 P1 P 0 1 N N N 18.595 2.455 24.820 -7.173 1.646 -0.696 P42 XVP 49 XVP S07 S1 S 0 1 N N N 18.642 -3.538 16.208 5.107 1.482 1.483 S07 XVP 50 XVP H131 H1 H 0 0 N N N 21.541 -0.977 15.053 1.413 0.355 2.020 H131 XVP 51 XVP H151 H2 H 0 0 N N N 20.069 -1.147 17.157 0.573 2.104 -0.336 H151 XVP 52 XVP H201 H3 H 0 0 N N N 23.850 0.204 20.011 -0.396 -3.211 1.664 H201 XVP 53 XVP H211 H4 H 0 0 N N N 25.455 1.338 18.125 -2.648 -3.821 1.931 H211 XVP 54 XVP H212 H5 H 0 0 N N N 26.008 1.570 19.818 -2.917 -2.432 0.835 H212 XVP 55 XVP H241 H6 H 0 0 N N N 24.645 3.872 21.015 -2.055 -6.125 0.567 H241 XVP 56 XVP H262 H7 H 0 0 N N N 21.036 4.247 20.515 -0.876 -5.325 -3.236 H262 XVP 57 XVP H261 H8 H 0 0 N N N 21.276 3.434 18.931 0.008 -6.386 -2.100 H261 XVP 58 XVP H282 H9 H 0 0 N N N 18.858 1.392 15.895 -1.052 0.991 1.994 H282 XVP 59 XVP H281 H10 H 0 0 N N N 18.002 -0.157 16.206 -0.490 2.675 1.867 H281 XVP 60 XVP H021 H11 H 0 0 N N N 14.471 -4.241 13.357 6.623 2.553 -3.017 H021 XVP 61 XVP H031 H12 H 0 0 N N N 16.121 -2.780 14.766 5.051 2.667 -1.125 H031 XVP 62 XVP H051 H13 H 0 0 N N N 18.649 -6.443 15.506 7.607 0.123 1.152 H051 XVP 63 XVP H061 H14 H 0 0 N N N 17.011 -7.904 14.070 9.179 0.009 -0.739 H061 XVP 64 XVP H112 H15 H 0 0 N N N 20.250 -3.881 13.195 3.167 -1.207 2.401 H112 XVP 65 XVP H111 H16 H 0 0 N N N 20.305 -4.994 14.603 4.936 -1.017 2.459 H111 XVP 66 XVP H1 H17 H 0 1 N N N 19.539 -1.593 13.487 2.476 -0.216 -0.184 H1 XVP 67 XVP H2 H18 H 0 1 N N N 18.503 -1.315 14.928 3.038 1.468 -0.311 H2 XVP 68 XVP H231 H19 H 0 0 N N N 23.696 1.854 21.586 0.186 -5.201 0.558 H231 XVP 69 XVP H251 H20 H 0 0 N N N 21.529 2.527 21.580 0.949 -4.245 -1.551 H251 XVP 70 XVP H252 H21 H 0 0 N N N 21.361 1.658 20.017 -0.613 -3.395 -1.814 H252 XVP 71 XVP H301 H22 H 0 0 N N N 18.124 -1.161 18.703 -1.422 4.174 0.199 H301 XVP 72 XVP H311 H23 H 0 0 N N N 17.695 -0.537 21.200 -3.369 4.722 -1.203 H311 XVP 73 XVP H331 H24 H 0 0 N N N 18.469 3.804 20.291 -4.728 0.682 -0.883 H331 XVP 74 XVP H341 H25 H 0 0 N N N 18.859 3.189 17.771 -2.773 0.140 0.511 H341 XVP 75 XVP H361 H26 H 0 0 N N N 23.029 -6.925 13.240 3.343 -4.359 -0.426 H361 XVP 76 XVP H363 H27 H 0 0 N N N 23.082 -6.274 14.913 5.123 -4.353 -0.396 H363 XVP 77 XVP H362 H28 H 0 0 N N N 21.509 -6.434 14.061 4.219 -5.479 0.644 H362 XVP 78 XVP H371 H29 H 0 0 N N N 22.360 -2.745 14.054 3.375 -1.941 0.005 H371 XVP 79 XVP H382 H30 H 0 0 N N N 23.805 -4.546 13.255 3.301 -3.563 1.922 H382 XVP 80 XVP H381 H31 H 0 0 N N N 22.231 -4.706 12.403 5.081 -3.557 1.952 H381 XVP 81 XVP H393 H32 H 0 0 N N N 22.147 -3.330 16.455 5.493 -0.847 -0.552 H393 XVP 82 XVP H391 H33 H 0 0 N N N 22.317 -5.072 16.051 6.348 -1.809 0.678 H391 XVP 83 XVP H392 H34 H 0 0 N N N 23.695 -3.950 15.788 5.674 -2.605 -0.764 H392 XVP 84 XVP H402 H35 H 0 0 N N N 13.625 -6.602 12.814 9.474 0.240 -3.137 H402 XVP 85 XVP H401 H36 H 0 0 N N N 14.636 -8.060 13.097 8.405 1.298 -4.089 H401 XVP 86 XVP H411 H37 H 0 0 N N N 19.808 2.014 22.676 -6.819 2.265 -3.004 H411 XVP 87 XVP H412 H38 H 0 0 N N N 19.008 3.622 22.646 -5.613 1.078 -2.451 H412 XVP 88 XVP H452 H39 H 0 0 N N N 20.997 2.114 24.274 -9.873 0.861 0.148 H452 XVP 89 XVP H451 H40 H 0 0 N N N 21.623 2.553 25.899 -8.728 -0.310 0.844 H451 XVP 90 XVP H462 H41 H 0 0 N N N 19.327 0.260 27.287 -7.422 0.192 1.842 H462 XVP 91 XVP H461 H42 H 0 0 N N N 17.796 1.188 27.137 -7.152 1.908 2.228 H461 XVP 92 XVP H473 H43 H 0 0 N N N 22.990 3.608 24.095 -10.493 -0.783 -1.601 H473 XVP 93 XVP H472 H44 H 0 0 N N N 21.522 4.417 23.449 -9.348 -1.955 -0.906 H472 XVP 94 XVP H471 H45 H 0 0 N N N 22.148 4.857 25.074 -10.776 -1.445 0.027 H471 XVP 95 XVP H483 H46 H 0 0 N N N 17.322 -1.266 27.544 -5.052 -0.302 2.377 H483 XVP 96 XVP H481 H47 H 0 0 N N N 16.733 -0.761 25.923 -4.782 1.414 2.764 H481 XVP 97 XVP H482 H48 H 0 0 N N N 18.263 -1.690 26.074 -5.881 0.438 3.768 H482 XVP 98 XVP H161 H49 H 0 0 N N N 21.139 1.621 16.778 -0.015 0.042 -1.224 H161 XVP 99 XVP H141 H50 H 0 0 N N N 20.874 1.217 14.494 2.162 3.070 1.315 H141 XVP 100 XVP H501 H51 H 0 0 N N N 14.550 -7.452 10.832 10.563 2.270 -3.766 H501 XVP 101 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XVP O50 C40 SING N N 1 XVP C40 C01 SING N N 2 XVP C38 C36 SING N N 3 XVP C38 C37 SING N N 4 XVP C01 C02 DOUB Y N 5 XVP C01 C06 SING Y N 6 XVP C02 C03 SING Y N 7 XVP C06 C05 DOUB Y N 8 XVP C11 C37 SING N N 9 XVP C11 N10 SING N N 10 XVP O14 C13 SING N N 11 XVP C37 C39 SING N N 12 XVP C12 N10 SING N N 13 XVP C12 C13 SING N N 14 XVP C03 C04 DOUB Y N 15 XVP C05 C04 SING Y N 16 XVP N10 S07 SING N N 17 XVP C13 C15 SING N N 18 XVP C04 S07 SING N N 19 XVP S07 O08 DOUB N N 20 XVP S07 O09 DOUB N N 21 XVP C15 C28 SING N N 22 XVP C15 N16 SING N N 23 XVP C28 C29 SING N N 24 XVP N16 C17 SING N N 25 XVP C29 C34 DOUB Y N 26 XVP C29 C30 SING Y N 27 XVP C17 O19 SING N N 28 XVP C17 O18 DOUB N N 29 XVP O19 C20 SING N N 30 XVP C34 C33 SING Y N 31 XVP O22 C21 SING N N 32 XVP O22 C24 SING N N 33 XVP C30 C31 DOUB Y N 34 XVP C21 C20 SING N N 35 XVP C20 C23 SING N N 36 XVP O27 C26 SING N N 37 XVP O27 C24 SING N N 38 XVP C26 C25 SING N N 39 XVP C33 C32 DOUB Y N 40 XVP C24 C23 SING N N 41 XVP C31 C32 SING Y N 42 XVP C25 C23 SING N N 43 XVP C32 O35 SING N N 44 XVP O35 C41 SING N N 45 XVP C41 P42 SING N N 46 XVP C47 C45 SING N N 47 XVP P42 O49 DOUB N N 48 XVP P42 O44 SING N N 49 XVP P42 O43 SING N N 50 XVP C45 O43 SING N N 51 XVP O44 C46 SING N N 52 XVP C48 C46 SING N N 53 XVP C13 H131 SING N N 54 XVP C15 H151 SING N N 55 XVP C20 H201 SING N N 56 XVP C21 H211 SING N N 57 XVP C21 H212 SING N N 58 XVP C24 H241 SING N N 59 XVP C26 H262 SING N N 60 XVP C26 H261 SING N N 61 XVP C28 H282 SING N N 62 XVP C28 H281 SING N N 63 XVP C02 H021 SING N N 64 XVP C03 H031 SING N N 65 XVP C05 H051 SING N N 66 XVP C06 H061 SING N N 67 XVP C11 H112 SING N N 68 XVP C11 H111 SING N N 69 XVP C12 H1 SING N N 70 XVP C12 H2 SING N N 71 XVP C23 H231 SING N N 72 XVP C25 H251 SING N N 73 XVP C25 H252 SING N N 74 XVP C30 H301 SING N N 75 XVP C31 H311 SING N N 76 XVP C33 H331 SING N N 77 XVP C34 H341 SING N N 78 XVP C36 H361 SING N N 79 XVP C36 H363 SING N N 80 XVP C36 H362 SING N N 81 XVP C37 H371 SING N N 82 XVP C38 H382 SING N N 83 XVP C38 H381 SING N N 84 XVP C39 H393 SING N N 85 XVP C39 H391 SING N N 86 XVP C39 H392 SING N N 87 XVP C40 H402 SING N N 88 XVP C40 H401 SING N N 89 XVP C41 H411 SING N N 90 XVP C41 H412 SING N N 91 XVP C45 H452 SING N N 92 XVP C45 H451 SING N N 93 XVP C46 H462 SING N N 94 XVP C46 H461 SING N N 95 XVP C47 H473 SING N N 96 XVP C47 H472 SING N N 97 XVP C47 H471 SING N N 98 XVP C48 H483 SING N N 99 XVP C48 H481 SING N N 100 XVP C48 H482 SING N N 101 XVP N16 H161 SING N N 102 XVP O14 H141 SING N N 103 XVP O50 H501 SING N N 104 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XVP SMILES ACDLabs 12.01 "C(C(Cc1ccc(cc1)OCP(OCC)(OCC)=O)NC(OC2C3C(OC2)OCC3)=O)(CN(CC(C)CC)S(c4ccc(cc4)CO)(=O)=O)O" XVP InChI InChI 1.03 "InChI=1S/C34H51N2O12PS/c1-5-24(4)19-36(50(41,42)28-14-10-26(21-37)11-15-28)20-31(38)30(35-34(39)48-32-22-44-33-29(32)16-17-43-33)18-25-8-12-27(13-9-25)45-23-49(40,46-6-2)47-7-3/h8-15,24,29-33,37-38H,5-7,16-23H2,1-4H3,(H,35,39)/t24-,29-,30-,31+,32-,33+/m0/s1" XVP InChIKey InChI 1.03 ZDFOHGSCDGSGKK-NRCXORKASA-N XVP SMILES_CANONICAL CACTVS 3.385 "CCO[P](=O)(COc1ccc(C[C@H](NC(=O)O[C@H]2CO[C@H]3OCC[C@@H]23)[C@H](O)CN(C[C@@H](C)CC)[S](=O)(=O)c4ccc(CO)cc4)cc1)OCC" XVP SMILES CACTVS 3.385 "CCO[P](=O)(COc1ccc(C[CH](NC(=O)O[CH]2CO[CH]3OCC[CH]23)[CH](O)CN(C[CH](C)CC)[S](=O)(=O)c4ccc(CO)cc4)cc1)OCC" XVP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)CN(C[C@H]([C@H](Cc1ccc(cc1)OCP(=O)(OCC)OCC)NC(=O)O[C@H]2CO[C@@H]3[C@H]2CCO3)O)S(=O)(=O)c4ccc(cc4)CO" XVP SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)CN(CC(C(Cc1ccc(cc1)OCP(=O)(OCC)OCC)NC(=O)OC2COC3C2CCO3)O)S(=O)(=O)c4ccc(cc4)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XVP "SYSTEMATIC NAME" ACDLabs 12.01 "diethyl ({4-[(2S,3R)-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxy-4-({[4-(hydroxymethyl)phenyl]sulfonyl}[(2S)-2-methylbutyl]amino)butyl]phenoxy}methyl)phosphonate" XVP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},4~{R},6~{a}~{R})-2,3,3~{a},4,5,6~{a}-hexahydrofuro[2,3-b]furan-4-yl] ~{N}-[(2~{S},3~{R})-1-[4-(diethoxyphosphorylmethoxy)phenyl]-4-[[4-(hydroxymethyl)phenyl]sulfonyl-[(2~{S})-2-methylbutyl]amino]-3-oxidanyl-butan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XVP "Create component" 2021-01-15 RCSB XVP "Initial release" 2022-01-26 RCSB ##