data_XVR # _chem_comp.id XVR _chem_comp.name "(5S)-5-[(6R)-6-hydroxy-6-methyl-5-oxooctyl]furan-2(5H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-29 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 240.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XVR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6WP9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XVR O15 O1 O 0 1 N N N -9.868 34.469 -29.528 -2.596 1.121 1.201 O15 XVR 1 XVR C11 C1 C 0 1 N N N -10.451 34.546 -28.444 -2.642 0.285 0.331 C11 XVR 2 XVR C12 C2 C 0 1 N N R -10.101 33.558 -27.341 -3.960 -0.340 -0.045 C12 XVR 3 XVR O16 O2 O 0 1 N N N -8.944 32.807 -27.749 -3.936 -0.709 -1.425 O16 XVR 4 XVR C13 C3 C 0 1 N N N -11.249 32.589 -27.036 -5.088 0.666 0.195 C13 XVR 5 XVR C14 C4 C 0 1 N N N -11.835 31.879 -28.239 -6.437 -0.008 -0.068 C14 XVR 6 XVR C10 C5 C 0 1 N N N -11.514 35.611 -28.202 -1.381 -0.130 -0.382 C10 XVR 7 XVR C9 C6 C 0 1 N N N -12.093 36.175 -29.496 -0.194 0.654 0.182 C9 XVR 8 XVR C8 C7 C 0 1 N N N -12.624 37.569 -29.208 1.086 0.233 -0.542 C8 XVR 9 XVR C7 C8 C 0 1 N N N -13.461 38.100 -30.355 2.273 1.018 0.022 C7 XVR 10 XVR C4 C9 C 0 1 N N S -14.087 39.436 -29.968 3.553 0.596 -0.702 C4 XVR 11 XVR C3 C10 C 0 1 N N N -14.693 40.110 -31.182 4.723 1.415 -0.209 C3 XVR 12 XVR C2 C11 C 0 1 N N N -16.013 40.212 -31.077 5.597 0.563 0.320 C2 XVR 13 XVR O5 O3 O 0 1 N N N -15.177 39.170 -29.076 3.872 -0.789 -0.391 O5 XVR 14 XVR C1 C12 C 0 1 N N N -16.348 39.608 -29.786 5.076 -0.803 0.211 C1 XVR 15 XVR O6 O4 O 0 1 N N N -17.457 39.473 -29.328 5.648 -1.801 0.605 O6 XVR 16 XVR C5 C13 C 0 1 N N N -9.738 34.295 -26.044 -4.198 -1.586 0.812 C5 XVR 17 XVR H1 H1 H 0 1 N N N -8.702 33.053 -28.634 -3.790 0.033 -2.028 H1 XVR 18 XVR H2 H2 H 0 1 N N N -12.056 33.159 -26.552 -5.051 1.014 1.227 H2 XVR 19 XVR H3 H3 H 0 1 N N N -10.872 31.824 -26.341 -4.968 1.514 -0.480 H3 XVR 20 XVR H4 H4 H 0 1 N N N -12.646 31.212 -27.912 -7.240 0.709 0.102 H4 XVR 21 XVR H5 H5 H 0 1 N N N -12.234 32.622 -28.945 -6.474 -0.356 -1.100 H5 XVR 22 XVR H6 H6 H 0 1 N N N -11.051 31.287 -28.733 -6.557 -0.855 0.606 H6 XVR 23 XVR H7 H7 H 0 1 N N N -11.062 36.435 -27.631 -1.214 -1.197 -0.234 H7 XVR 24 XVR H8 H8 H 0 1 N N N -12.331 35.165 -27.617 -1.480 0.078 -1.447 H8 XVR 25 XVR H9 H9 H 0 1 N N N -12.911 35.530 -29.850 -0.361 1.721 0.034 H9 XVR 26 XVR H10 H10 H 0 1 N N N -11.308 36.227 -30.264 -0.094 0.446 1.247 H10 XVR 27 XVR H11 H11 H 0 1 N N N -11.774 38.247 -29.044 1.253 -0.834 -0.394 H11 XVR 28 XVR H12 H12 H 0 1 N N N -13.245 37.533 -28.301 0.986 0.441 -1.607 H12 XVR 29 XVR H13 H13 H 0 1 N N N -14.258 37.379 -30.589 2.106 2.085 -0.126 H13 XVR 30 XVR H14 H14 H 0 1 N N N -12.821 38.240 -31.239 2.372 0.809 1.087 H14 XVR 31 XVR H15 H15 H 0 1 N N N -13.334 40.089 -29.503 3.433 0.721 -1.778 H15 XVR 32 XVR H16 H16 H 0 1 N N N -14.122 40.464 -32.028 4.830 2.488 -0.274 H16 XVR 33 XVR H17 H17 H 0 1 N N N -16.695 40.648 -31.792 6.544 0.835 0.763 H17 XVR 34 XVR H18 H18 H 0 1 N N N -9.489 33.562 -25.262 -4.216 -1.304 1.865 H18 XVR 35 XVR H19 H19 H 0 1 N N N -8.871 34.948 -26.224 -5.151 -2.037 0.540 H19 XVR 36 XVR H20 H20 H 0 1 N N N -10.594 34.904 -25.717 -3.394 -2.302 0.641 H20 XVR 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XVR C3 C2 DOUB N N 1 XVR C3 C4 SING N N 2 XVR C2 C1 SING N N 3 XVR C7 C4 SING N N 4 XVR C7 C8 SING N N 5 XVR C4 O5 SING N N 6 XVR C1 O6 DOUB N N 7 XVR C1 O5 SING N N 8 XVR O15 C11 DOUB N N 9 XVR C9 C8 SING N N 10 XVR C9 C10 SING N N 11 XVR C11 C10 SING N N 12 XVR C11 C12 SING N N 13 XVR C14 C13 SING N N 14 XVR O16 C12 SING N N 15 XVR C12 C13 SING N N 16 XVR C12 C5 SING N N 17 XVR O16 H1 SING N N 18 XVR C13 H2 SING N N 19 XVR C13 H3 SING N N 20 XVR C14 H4 SING N N 21 XVR C14 H5 SING N N 22 XVR C14 H6 SING N N 23 XVR C10 H7 SING N N 24 XVR C10 H8 SING N N 25 XVR C9 H9 SING N N 26 XVR C9 H10 SING N N 27 XVR C8 H11 SING N N 28 XVR C8 H12 SING N N 29 XVR C7 H13 SING N N 30 XVR C7 H14 SING N N 31 XVR C4 H15 SING N N 32 XVR C3 H16 SING N N 33 XVR C2 H17 SING N N 34 XVR C5 H18 SING N N 35 XVR C5 H19 SING N N 36 XVR C5 H20 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XVR SMILES ACDLabs 12.01 "O=C(CCCCC1OC(C=C1)=O)C(CC)(C)O" XVR InChI InChI 1.03 "InChI=1S/C13H20O4/c1-3-13(2,16)11(14)7-5-4-6-10-8-9-12(15)17-10/h8-10,16H,3-7H2,1-2H3/t10-,13+/m0/s1" XVR InChIKey InChI 1.03 UOBYXVHBYDUQMN-GXFFZTMASA-N XVR SMILES_CANONICAL CACTVS 3.385 "CC[C@@](C)(O)C(=O)CCCC[C@@H]1OC(=O)C=C1" XVR SMILES CACTVS 3.385 "CC[C](C)(O)C(=O)CCCC[CH]1OC(=O)C=C1" XVR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@](C)(C(=O)CCCC[C@H]1C=CC(=O)O1)O" XVR SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)(C(=O)CCCCC1C=CC(=O)O1)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XVR "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-5-[(6R)-6-hydroxy-6-methyl-5-oxooctyl]furan-2(5H)-one" XVR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[(6~{R})-6-methyl-6-oxidanyl-5-oxidanylidene-octyl]-2~{H}-furan-5-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XVR "Create component" 2020-04-29 RCSB XVR "Initial release" 2020-07-22 RCSB ##