data_XW3 # _chem_comp.id XW3 _chem_comp.name "8-[(5-azanyl-1,3-dioxan-2-yl)methyl]-6-[2-chloranyl-4-(3-fluoranylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H22 Cl F N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-14 _chem_comp.pdbx_modified_date 2024-03-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.921 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XW3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R4U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag XW3 C1 C1 C 0 1 N N N -21.059 -26.869 -25.444 -6.795 3.294 1.109 C1 XW3 1 N N N XW3 C3 C2 C 0 1 Y N N -23.431 -27.338 -25.454 -4.718 2.150 0.437 C3 XW3 2 N N N XW3 C7 C3 C 0 1 N N N -27.352 -26.241 -26.497 -0.684 1.640 0.919 C7 XW3 3 N N N XW3 C8 C4 C 0 1 N N N -27.594 -25.108 -27.170 -0.040 0.727 0.127 C8 XW3 4 N N N XW3 C9 C5 C 0 1 N N N -26.455 -24.205 -27.560 -0.805 -0.036 -0.862 C9 XW3 5 N N N XW3 C12 C6 C 0 1 N N N -24.074 -23.767 -27.611 -2.884 -0.612 -1.986 C12 XW3 6 N N N XW3 C13 C7 C 0 1 N N N -23.459 -24.234 -28.916 -3.392 -1.906 -1.349 C13 XW3 7 N N N XW3 C15 C8 C 0 1 N N N -24.010 -25.192 -31.085 -2.656 -3.903 -0.248 C15 XW3 8 N N N XW3 C16 C9 C 0 1 N N N -23.343 -24.021 -31.815 -3.574 -3.584 0.937 C16 XW3 9 N N N XW3 C20 C10 C 0 1 Y N N -24.907 -25.822 -26.490 -2.786 1.071 -0.204 C20 XW3 10 N N N XW3 C22 C11 C 0 1 Y N N -28.973 -24.756 -27.574 1.419 0.513 0.269 C22 XW3 11 N N N XW3 C24 C12 C 0 1 Y N N -31.218 -24.085 -26.961 3.272 -0.403 1.490 C24 XW3 12 N N N XW3 C27 C13 C 0 1 Y N N -29.344 -24.709 -28.920 2.297 1.033 -0.685 C27 XW3 13 N N N XW3 C31 C14 C 0 1 Y N N -34.200 -21.952 -29.679 7.450 -0.306 2.058 C31 XW3 14 N N N XW3 C32 C15 C 0 1 Y N N -35.389 -22.622 -29.441 8.290 -0.495 0.976 C32 XW3 15 N N N XW3 C33 C16 C 0 1 Y N N -35.308 -23.844 -28.789 7.761 -0.486 -0.307 C33 XW3 16 N N N XW3 C34 C17 C 0 1 Y N N -34.070 -24.332 -28.405 6.398 -0.286 -0.459 C34 XW3 17 N N N XW3 N2 N1 N 0 1 N N N -22.139 -27.760 -25.062 -6.078 2.324 0.277 N2 XW3 18 N N N XW3 N4 N2 N 0 1 Y N N -24.441 -28.154 -25.106 -4.083 2.873 1.352 N4 XW3 19 N N N XW3 C5 C18 C 0 1 Y N N -25.685 -27.767 -25.446 -2.784 2.744 1.545 C5 XW3 20 N N N XW3 C6 C19 C 0 1 Y N N -25.990 -26.604 -26.133 -2.077 1.822 0.759 C6 XW3 21 N N N XW3 O10 O1 O 0 1 N N N -26.689 -23.181 -28.179 -0.240 -0.850 -1.570 O10 XW3 22 N N N XW3 N11 N3 N 0 1 N N N -25.166 -24.613 -27.210 -2.132 0.159 -0.992 N11 XW3 23 N N N XW3 O14 O2 O 0 1 N N N -24.454 -24.846 -29.760 -2.282 -2.679 -0.887 O14 XW3 24 N N N XW3 N17 N4 N 0 1 N N N -22.634 -24.535 -32.970 -4.076 -4.835 1.521 N17 XW3 25 N N N XW3 C18 C20 C 0 1 N N N -22.312 -23.415 -30.862 -4.753 -2.742 0.438 C18 XW3 26 N N N XW3 O19 O3 O 0 1 N N N -22.864 -23.106 -29.575 -4.245 -1.591 -0.245 O19 XW3 27 N N N XW3 N21 N5 N 0 1 Y N N -23.650 -26.192 -26.142 -4.095 1.263 -0.324 N21 XW3 28 N N N XW3 C23 C21 C 0 1 Y N N -29.919 -24.443 -26.592 1.916 -0.204 1.358 C23 XW3 29 N N N XW3 C25 C22 C 0 1 Y N N -31.587 -24.029 -28.310 4.150 0.112 0.535 C25 XW3 30 N N N XW3 C26 C23 C 0 1 Y N N -30.639 -24.335 -29.289 3.654 0.834 -0.551 C26 XW3 31 N N N XW3 CL28 CL1 CL 0 0 N N N -28.168 -25.078 -30.131 1.680 1.930 -2.037 CL28 XW3 32 N N N XW3 C29 C24 C 0 1 Y N N -32.926 -23.606 -28.697 5.609 -0.102 0.679 C29 XW3 33 N N N XW3 N30 N6 N 0 1 Y N N -32.975 -22.414 -29.335 6.157 -0.118 1.887 N30 XW3 34 N N N XW3 F35 F1 F 0 1 N N N -34.011 -25.498 -27.765 5.840 -0.269 -1.689 F35 XW3 35 N N N XW3 H1 H1 H 0 1 N N N -20.101 -27.283 -25.096 -6.381 4.289 0.946 H1 XW3 36 N N N XW3 H2 H2 H 0 1 N N N -21.038 -26.767 -26.539 -7.852 3.292 0.841 H2 XW3 37 N N N XW3 H3 H3 H 0 1 N N N -21.220 -25.881 -24.987 -6.686 3.022 2.159 H3 XW3 38 N N N XW3 H4 H4 H 0 1 N N N -28.172 -26.888 -26.223 -0.137 2.211 1.654 H4 XW3 39 N N N XW3 H5 H5 H 0 1 N N N -23.303 -23.783 -26.827 -2.234 -0.852 -2.827 H5 XW3 40 N N N XW3 H6 H6 H 0 1 N N N -24.446 -22.740 -27.739 -3.731 -0.023 -2.337 H6 XW3 41 N N N XW3 H7 H7 H 0 1 N N N -22.678 -24.973 -28.683 -3.952 -2.480 -2.088 H7 XW3 42 N N N XW3 H8 H8 H 0 1 N N N -24.880 -25.522 -31.672 -1.763 -4.416 0.110 H8 XW3 43 N N N XW3 H9 H9 H 0 1 N N N -23.286 -26.016 -31.008 -3.183 -4.540 -0.959 H9 XW3 44 N N N XW3 H10 H10 H 0 1 N N N -24.093 -23.269 -32.100 -3.018 -3.025 1.690 H10 XW3 45 N N N XW3 H11 H11 H 0 1 N N N -31.945 -23.849 -26.198 3.657 -0.957 2.333 H11 XW3 46 N N N XW3 H12 H12 H 0 1 N N N -34.254 -20.994 -30.174 7.859 -0.317 3.057 H12 XW3 47 N N N XW3 H13 H13 H 0 1 N N N -36.339 -22.211 -29.750 9.348 -0.647 1.128 H13 XW3 48 N N N XW3 H14 H14 H 0 1 N N N -36.204 -24.411 -28.582 8.397 -0.630 -1.168 H14 XW3 49 N N N XW3 H15 H15 H 0 1 N N N -22.131 -27.848 -24.066 -6.559 1.805 -0.387 H15 XW3 50 N N N XW3 H16 H16 H 0 1 N N N -26.505 -28.410 -25.162 -2.276 3.337 2.291 H16 XW3 51 N N N XW3 H17 H17 H 0 1 N N N -22.194 -23.779 -33.455 -4.684 -4.650 2.305 H17 XW3 52 N N N XW3 H18 H18 H 0 1 N N N -21.939 -25.188 -32.671 -4.544 -5.397 0.826 H18 XW3 53 N N N XW3 H20 H20 H 0 1 N N N -21.490 -24.134 -30.729 -5.361 -3.334 -0.246 H20 XW3 54 N N N XW3 H21 H21 H 0 1 N N N -21.921 -22.489 -31.309 -5.359 -2.424 1.286 H21 XW3 55 N N N XW3 H22 H22 H 0 1 N N N -29.645 -24.478 -25.548 1.237 -0.603 2.097 H22 XW3 56 N N N XW3 H23 H23 H 0 1 N N N -30.907 -24.282 -30.334 4.334 1.235 -1.288 H23 XW3 57 N N N # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XW3 N17 C16 SING N N 1 XW3 C16 C15 SING N N 2 XW3 C16 C18 SING N N 3 XW3 C15 O14 SING N N 4 XW3 C18 O19 SING N N 5 XW3 CL28 C27 SING N N 6 XW3 O14 C13 SING N N 7 XW3 C31 C32 DOUB Y N 8 XW3 C31 N30 SING Y N 9 XW3 O19 C13 SING N N 10 XW3 C32 C33 SING Y N 11 XW3 N30 C29 DOUB Y N 12 XW3 C26 C27 DOUB Y N 13 XW3 C26 C25 SING Y N 14 XW3 C27 C22 SING Y N 15 XW3 C13 C12 SING N N 16 XW3 C33 C34 DOUB Y N 17 XW3 C29 C34 SING Y N 18 XW3 C29 C25 SING N N 19 XW3 C34 F35 SING N N 20 XW3 C25 C24 DOUB Y N 21 XW3 O10 C9 DOUB N N 22 XW3 C12 N11 SING N N 23 XW3 C22 C8 SING N N 24 XW3 C22 C23 DOUB Y N 25 XW3 C9 N11 SING N N 26 XW3 C9 C8 SING N N 27 XW3 N11 C20 SING N N 28 XW3 C8 C7 DOUB N N 29 XW3 C24 C23 SING Y N 30 XW3 C7 C6 SING N N 31 XW3 C20 N21 DOUB Y N 32 XW3 C20 C6 SING Y N 33 XW3 N21 C3 SING Y N 34 XW3 C6 C5 DOUB Y N 35 XW3 C3 N4 DOUB Y N 36 XW3 C3 N2 SING N N 37 XW3 C5 N4 SING Y N 38 XW3 C1 N2 SING N N 39 XW3 C1 H1 SING N N 40 XW3 C1 H2 SING N N 41 XW3 C1 H3 SING N N 42 XW3 C7 H4 SING N N 43 XW3 C12 H5 SING N N 44 XW3 C12 H6 SING N N 45 XW3 C13 H7 SING N N 46 XW3 C15 H8 SING N N 47 XW3 C15 H9 SING N N 48 XW3 C16 H10 SING N N 49 XW3 C24 H11 SING N N 50 XW3 C31 H12 SING N N 51 XW3 C32 H13 SING N N 52 XW3 C33 H14 SING N N 53 XW3 N2 H15 SING N N 54 XW3 C5 H16 SING N N 55 XW3 N17 H17 SING N N 56 XW3 N17 H18 SING N N 57 XW3 C18 H20 SING N N 58 XW3 C18 H21 SING N N 59 XW3 C23 H22 SING N N 60 XW3 C26 H23 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XW3 InChI InChI 1.06 "InChI=1S/C24H22ClFN6O3/c1-28-24-30-9-14-7-17(16-5-4-13(8-18(16)25)21-19(26)3-2-6-29-21)23(33)32(22(14)31-24)10-20-34-11-15(27)12-35-20/h2-9,15,20H,10-12,27H2,1H3,(H,28,30,31)/t15-,20-" XW3 InChIKey InChI 1.06 QKNBRNSGPNCARD-SGNKCFNYSA-N XW3 SMILES_CANONICAL CACTVS 3.385 "CNc1ncc2C=C(C(=O)N(C[C@H]3OC[C@H](N)CO3)c2n1)c4ccc(cc4Cl)c5ncccc5F" XW3 SMILES CACTVS 3.385 "CNc1ncc2C=C(C(=O)N(C[CH]3OC[CH](N)CO3)c2n1)c4ccc(cc4Cl)c5ncccc5F" XW3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1ncc2c(n1)N(C(=O)C(=C2)c3ccc(cc3Cl)c4c(cccn4)F)CC5OCC(CO5)N" XW3 SMILES "OpenEye OEToolkits" 2.0.7 "CNc1ncc2c(n1)N(C(=O)C(=C2)c3ccc(cc3Cl)c4c(cccn4)F)CC5OCC(CO5)N" # _pdbx_chem_comp_identifier.comp_id XW3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-[(5-azanyl-1,3-dioxan-2-yl)methyl]-6-[2-chloranyl-4-(3-fluoranylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XW3 "Create component" 2023-11-14 PDBE XW3 "Initial release" 2024-03-27 RCSB #