data_XWY # _chem_comp.id XWY _chem_comp.name "(3R)-3-methyl-4-{6-[1-(S-methylsulfonimidoyl)cyclopropyl]-2-(naphthalen-1-yl)pyrimidin-4-yl}morpholine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H26 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-18 _chem_comp.pdbx_modified_date 2021-07-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 422.543 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XWY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LB2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XWY C10 C1 C 0 1 N N R -130.689 -174.316 113.281 -1.293 3.525 -0.014 C10 XWY 1 XWY C13 C2 C 0 1 N N N -132.419 -175.218 115.291 -4.071 3.221 0.562 C13 XWY 2 XWY C15 C3 C 0 1 N N N -131.085 -172.912 112.802 -0.688 3.450 1.390 C15 XWY 3 XWY C17 C4 C 0 1 Y N N -126.798 -173.186 114.301 1.029 0.370 -0.503 C17 XWY 4 XWY C20 C5 C 0 1 Y N N -123.885 -171.385 112.550 4.234 1.743 -1.928 C20 XWY 5 XWY C21 C6 C 0 1 Y N N -123.674 -172.197 111.421 5.189 1.132 -1.172 C21 XWY 6 XWY C22 C7 C 0 1 Y N N -124.520 -173.349 111.239 4.815 0.239 -0.154 C22 XWY 7 XWY C24 C8 C 0 1 Y N N -126.336 -174.850 111.958 3.071 -0.912 1.095 C24 XWY 8 XWY C26 C9 C 0 1 Y N N -125.149 -175.306 109.892 5.384 -1.263 1.620 C26 XWY 9 XWY C03 C10 C 0 1 N N N -126.948 -172.326 117.856 -1.127 -2.560 0.107 C03 XWY 10 XWY C04 C11 C 0 1 N N N -127.600 -172.418 119.205 -0.077 -3.667 -0.009 C04 XWY 11 XWY C05 C12 C 0 1 N N N -126.373 -173.281 118.910 -0.631 -3.278 1.363 C05 XWY 12 XWY C06 C13 C 0 1 Y N N -127.348 -172.822 116.468 -0.668 -1.141 -0.110 C06 XWY 13 XWY C07 C14 C 0 1 Y N N -128.636 -173.307 116.246 -1.581 -0.103 -0.100 C07 XWY 14 XWY C08 C15 C 0 1 Y N N -128.924 -173.706 114.941 -1.115 1.197 -0.315 C08 XWY 15 XWY C11 C16 C 0 1 N N N -131.827 -175.306 113.087 -2.288 4.686 -0.081 C11 XWY 16 XWY C14 C17 C 0 1 N N N -131.324 -174.189 115.657 -3.094 2.045 0.636 C14 XWY 17 XWY C18 C18 C 0 1 Y N N -125.690 -172.925 113.267 2.471 0.623 -0.725 C18 XWY 18 XWY C19 C19 C 0 1 Y N N -124.881 -171.768 113.448 2.883 1.500 -1.714 C19 XWY 19 XWY C23 C20 C 0 1 Y N N -125.524 -173.697 112.131 3.442 -0.021 0.078 C23 XWY 20 XWY C25 C21 C 0 1 Y N N -126.118 -175.645 110.834 4.033 -1.517 1.846 C25 XWY 21 XWY C27 C22 C 0 1 Y N N -124.359 -174.180 110.087 5.780 -0.404 0.641 C27 XWY 22 XWY C29 C23 C 0 1 N N N -124.445 -171.455 117.362 -3.927 -2.628 0.929 C29 XWY 23 XWY N01 N1 N 0 1 N N N -125.882 -170.054 119.025 -2.861 -4.396 -0.771 N01 XWY 24 XWY N09 N2 N 0 1 N N N -130.235 -174.234 114.684 -1.995 2.268 -0.314 N09 XWY 25 XWY N16 N3 N 0 1 Y N N -128.025 -173.628 113.967 0.184 1.393 -0.506 N16 XWY 26 XWY N28 N4 N 0 1 Y N N -126.482 -172.770 115.489 0.613 -0.876 -0.312 N28 XWY 27 XWY O12 O1 O 0 1 N N N -132.858 -175.073 113.976 -3.366 4.437 0.826 O12 XWY 28 XWY O30 O2 O 0 1 N N N -126.635 -169.919 116.532 -3.172 -2.242 -1.650 O30 XWY 29 XWY S02 S1 S 0 1 N N R -126.052 -170.683 117.653 -2.807 -2.936 -0.464 S02 XWY 30 XWY H101 H1 H 0 0 N N N -129.843 -174.652 112.663 -0.500 3.682 -0.744 H101 XWY 31 XWY H131 H2 H 0 0 N N N -133.275 -175.080 115.968 -4.513 3.266 -0.433 H131 XWY 32 XWY H132 H3 H 0 0 N N N -132.010 -176.231 115.418 -4.858 3.088 1.305 H132 XWY 33 XWY H152 H4 H 0 0 N N N -130.243 -172.221 112.955 -0.060 2.562 1.468 H152 XWY 34 XWY H153 H5 H 0 0 N N N -131.340 -172.948 111.733 -0.085 4.339 1.573 H153 XWY 35 XWY H151 H6 H 0 0 N N N -131.956 -172.561 113.375 -1.488 3.395 2.128 H151 XWY 36 XWY H201 H7 H 0 0 N N N -123.296 -170.495 112.716 4.533 2.431 -2.705 H201 XWY 37 XWY H211 H8 H 0 0 N N N -122.897 -171.963 110.708 6.234 1.335 -1.355 H211 XWY 38 XWY H241 H9 H 0 0 N N N -127.101 -175.103 112.677 2.027 -1.118 1.281 H241 XWY 39 XWY H261 H10 H 0 0 N N N -125.012 -175.917 109.012 6.127 -1.755 2.229 H261 XWY 40 XWY H041 H11 H 0 0 N N N -127.521 -171.577 119.910 -0.396 -4.621 -0.428 H041 XWY 41 XWY H042 H12 H 0 0 N N N -128.589 -172.888 119.304 0.945 -3.369 -0.243 H042 XWY 42 XWY H052 H13 H 0 0 N N N -126.478 -174.369 118.787 0.027 -2.725 2.033 H052 XWY 43 XWY H051 H14 H 0 0 N N N -125.410 -173.058 119.393 -1.314 -3.977 1.847 H051 XWY 44 XWY H071 H15 H 0 0 N N N -129.368 -173.370 117.038 -2.632 -0.293 0.061 H071 XWY 45 XWY H111 H16 H 0 0 N N N -132.212 -175.212 112.061 -1.786 5.613 0.197 H111 XWY 46 XWY H112 H17 H 0 0 N N N -131.444 -176.325 113.243 -2.679 4.773 -1.095 H112 XWY 47 XWY H141 H18 H 0 0 N N N -130.927 -174.422 116.656 -2.693 1.968 1.647 H141 XWY 48 XWY H142 H19 H 0 0 N N N -131.763 -173.180 115.663 -3.616 1.122 0.381 H142 XWY 49 XWY H191 H20 H 0 0 N N N -125.046 -171.157 114.323 2.146 2.000 -2.325 H191 XWY 50 XWY H251 H21 H 0 0 N N N -126.709 -176.537 110.691 3.744 -2.204 2.628 H251 XWY 51 XWY H271 H22 H 0 0 N N N -123.608 -173.927 109.353 6.831 -0.217 0.477 H271 XWY 52 XWY H292 H23 H 0 0 N N N -124.125 -171.989 118.269 -4.939 -2.925 0.653 H292 XWY 53 XWY H293 H24 H 0 0 N N N -124.526 -172.166 116.527 -3.601 -3.208 1.792 H293 XWY 54 XWY H291 H25 H 0 0 N N N -123.706 -170.680 117.113 -3.915 -1.567 1.178 H291 XWY 55 XWY H011 H26 H 0 0 N N N -126.205 -169.108 119.046 -3.459 -4.975 -0.273 H011 XWY 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XWY C26 C27 DOUB Y N 1 XWY C26 C25 SING Y N 2 XWY C27 C22 SING Y N 3 XWY C25 C24 DOUB Y N 4 XWY C22 C21 DOUB Y N 5 XWY C22 C23 SING Y N 6 XWY C21 C20 SING Y N 7 XWY C24 C23 SING Y N 8 XWY C23 C18 DOUB Y N 9 XWY C20 C19 DOUB Y N 10 XWY C15 C10 SING N N 11 XWY C11 C10 SING N N 12 XWY C11 O12 SING N N 13 XWY C18 C19 SING Y N 14 XWY C18 C17 SING N N 15 XWY C10 N09 SING N N 16 XWY N16 C17 DOUB Y N 17 XWY N16 C08 SING Y N 18 XWY O12 C13 SING N N 19 XWY C17 N28 SING Y N 20 XWY N09 C08 SING N N 21 XWY N09 C14 SING N N 22 XWY C08 C07 DOUB Y N 23 XWY C13 C14 SING N N 24 XWY N28 C06 DOUB Y N 25 XWY C07 C06 SING Y N 26 XWY C06 C03 SING N N 27 XWY O30 S02 DOUB N N 28 XWY C29 S02 SING N N 29 XWY S02 C03 SING N N 30 XWY S02 N01 DOUB N N 31 XWY C03 C05 SING N N 32 XWY C03 C04 SING N N 33 XWY C05 C04 SING N N 34 XWY C10 H101 SING N N 35 XWY C13 H131 SING N N 36 XWY C13 H132 SING N N 37 XWY C15 H152 SING N N 38 XWY C15 H153 SING N N 39 XWY C15 H151 SING N N 40 XWY C20 H201 SING N N 41 XWY C21 H211 SING N N 42 XWY C24 H241 SING N N 43 XWY C26 H261 SING N N 44 XWY C04 H041 SING N N 45 XWY C04 H042 SING N N 46 XWY C05 H052 SING N N 47 XWY C05 H051 SING N N 48 XWY C07 H071 SING N N 49 XWY C11 H111 SING N N 50 XWY C11 H112 SING N N 51 XWY C14 H141 SING N N 52 XWY C14 H142 SING N N 53 XWY C19 H191 SING N N 54 XWY C25 H251 SING N N 55 XWY C27 H271 SING N N 56 XWY C29 H292 SING N N 57 XWY C29 H293 SING N N 58 XWY C29 H291 SING N N 59 XWY N01 H011 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XWY SMILES ACDLabs 12.01 "C5(N(c4cc(C1(CC1)S(C)(=N)=O)nc(c3cccc2c3cccc2)n4)CCOC5)C" XWY InChI InChI 1.03 "InChI=1S/C23H26N4O2S/c1-16-15-29-13-12-27(16)21-14-20(23(10-11-23)30(2,24)28)25-22(26-21)19-9-5-7-17-6-3-4-8-18(17)19/h3-9,14,16,24H,10-13,15H2,1-2H3/t16-,30-/m1/s1" XWY InChIKey InChI 1.03 GOXNOBRASUTVOC-XHDOVSQSSA-N XWY SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1COCCN1c2cc(nc(n2)c3cccc4ccccc34)C5(CC5)[S@](C)(=N)=O" XWY SMILES CACTVS 3.385 "C[CH]1COCCN1c2cc(nc(n2)c3cccc4ccccc34)C5(CC5)[S](C)(=N)=O" XWY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1COCCN1c2cc(nc(n2)c3cccc4c3cccc4)C5(CC5)[S@](=N)(=O)C" XWY SMILES "OpenEye OEToolkits" 2.0.7 "CC1COCCN1c2cc(nc(n2)c3cccc4c3cccc4)C5(CC5)S(=N)(=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XWY "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-3-methyl-4-{6-[1-(S-methylsulfonimidoyl)cyclopropyl]-2-(naphthalen-1-yl)pyrimidin-4-yl}morpholine" XWY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "azanylidene-methyl-[1-[6-[(3~{R})-3-methylmorpholin-4-yl]-2-naphthalen-1-yl-pyrimidin-4-yl]cyclopropyl]-oxidanylidene-$l^{6}-sulfane" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XWY "Create component" 2021-01-18 RCSB XWY "Initial release" 2021-07-14 RCSB ##