data_XXX # _chem_comp.id XXX _chem_comp.name "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H26 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(2R,3S,4R,5R,6R)-6-((1R,2R,3S,4R,6S)-4,6-DIAMINO-2,3-DIHYDROXYCYCLOHEXYLOXY)-5-AMINO-2-(AMINOMETHYL)-TETRAHYDRO-2H-PYRA N-3,4-DIOL; NEOMYCIN A; NEAMINE; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucoside; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-D-glucoside; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-glucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-11-03 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 322.358 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XXX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ET8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XXX O3A O3 O 0 1 N N N 21.737 15.465 34.771 1.675 2.146 -0.883 O3A XXX 1 XXX C4A C4 C 0 1 N N R 22.644 16.175 35.650 2.101 1.149 0.047 C4A XXX 2 XXX C5A C5 C 0 1 N N S 23.961 16.535 34.862 3.463 0.600 -0.381 C5A XXX 3 XXX O4A O4 O 0 1 N N N 23.685 17.353 33.718 4.417 1.664 -0.408 O4A XXX 4 XXX C6A C6 C 0 1 N N R 24.921 17.289 35.749 3.919 -0.468 0.615 C6A XXX 5 XXX N1 N1 N 0 1 N N N 26.170 17.617 34.980 5.227 -0.994 0.204 N1 XXX 6 XXX C7 C7 C 0 1 N N N 25.254 16.425 36.987 2.898 -1.606 0.645 C7 XXX 7 XXX C8 C8 C 0 1 N N S 23.924 16.117 37.735 1.535 -1.058 1.073 C8 XXX 8 XXX N2 N2 N 0 1 N N N 24.321 15.277 38.944 0.554 -2.151 1.102 N2 XXX 9 XXX C9 C9 C 0 1 N N R 23.024 15.268 36.887 1.079 0.010 0.077 C9 XXX 10 XXX O1 O5 O 0 1 N N N 21.855 14.981 37.548 -0.194 0.522 0.477 O1 XXX 11 XXX C1 C10 C 0 1 N N R 20.893 14.157 36.976 -0.890 0.878 -0.719 C1 XXX 12 XXX O5 O6 O 0 1 N N N 21.198 12.774 37.550 -1.344 -0.305 -1.373 O5 XXX 13 XXX C5 C11 C 0 1 N N R 21.030 12.704 39.034 -2.071 -1.075 -0.417 C5 XXX 14 XXX C6 C12 C 0 1 N N N 21.324 11.279 39.547 -2.414 -2.439 -1.017 C6 XXX 15 XXX N3 N3 N 0 1 N N N 22.721 10.883 39.221 -1.176 -3.190 -1.266 N3 XXX 16 XXX C4 C13 C 0 1 N N S 19.614 13.061 39.375 -3.362 -0.345 -0.040 C4 XXX 17 XXX O4 O7 O 0 1 N N N 19.464 13.009 40.753 -4.100 -1.133 0.897 O4 XXX 18 XXX C3 C14 C 0 1 N N R 19.262 14.437 38.889 -3.007 1.005 0.593 C3 XXX 19 XXX O3 O8 O 0 1 N N N 17.898 14.744 39.212 -4.198 1.762 0.816 O3 XXX 20 XXX C2 C15 C 0 1 N N R 19.437 14.486 37.410 -2.085 1.767 -0.365 C2 XXX 21 XXX N4 N4 N 0 1 N N N 19.077 15.861 36.909 -1.608 2.996 0.282 N4 XXX 22 XXX HO3A HO3 H 0 0 N N N 20.943 15.248 35.246 2.345 2.844 -0.871 HO3A XXX 23 XXX H4A H4 H 0 1 N N N 22.144 17.104 36.010 2.182 1.590 1.041 H4A XXX 24 XXX H5A H5 H 0 1 N N N 24.410 15.570 34.530 3.382 0.159 -1.374 H5A XXX 25 XXX HO4A HO4 H 0 0 N N N 24.479 17.570 33.243 4.093 2.314 -1.047 HO4A XXX 26 XXX H6 H6 H 0 1 N N N 24.455 18.244 36.088 4.001 -0.027 1.609 H6 XXX 27 XXX HN11 HN11 H 0 0 N N N 25.968 18.121 34.116 5.487 -1.691 0.886 HN11 XXX 28 XXX HN12 HN12 H 0 0 N N N 26.819 18.127 35.580 5.083 -1.481 -0.668 HN12 XXX 29 XXX H71 H71 H 0 1 N N N 26.020 16.896 37.647 3.222 -2.367 1.355 H71 XXX 30 XXX H72 H72 H 0 1 N N N 25.825 15.503 36.728 2.816 -2.047 -0.348 H72 XXX 31 XXX H8 H8 H 0 1 N N N 23.394 17.063 37.995 1.617 -0.617 2.067 H8 XXX 32 XXX HN21 HN21 H 0 0 N N N 25.030 15.715 39.532 0.950 -2.881 1.676 HN21 XXX 33 XXX HN22 HN22 H 0 0 N N N 23.450 15.075 39.434 -0.255 -1.802 1.594 HN22 XXX 34 XXX H9 H9 H 0 1 N N N 23.529 14.312 36.616 0.998 -0.431 -0.916 H9 XXX 35 XXX H1 H10 H 0 1 N N N 20.940 14.262 35.867 -0.217 1.423 -1.381 H1 XXX 36 XXX H5 H11 H 0 1 N N N 21.743 13.414 39.515 -1.460 -1.214 0.475 H5 XXX 37 XXX H61 H121 H 0 1 N N N 20.584 10.540 39.162 -2.949 -2.299 -1.956 H61 XXX 38 XXX H62 H122 H 0 1 N N N 21.109 11.179 40.636 -3.042 -2.995 -0.321 H62 XXX 39 XXX HN31 HN31 H 0 0 N N N 23.398 11.560 39.573 -0.770 -3.386 -0.363 HN31 XXX 40 XXX HN32 HN32 H 0 0 N N N 22.915 9.941 39.560 -1.450 -4.078 -1.659 HN32 XXX 41 XXX H4 H13 H 0 1 N N N 18.932 12.335 38.874 -3.965 -0.182 -0.933 H4 XXX 42 XXX HO4 HO7 H 0 1 N Y N 18.567 13.235 40.969 -4.900 -0.634 1.113 HO4 XXX 43 XXX H3 H14 H 0 1 N N N 19.928 15.182 39.383 -2.495 0.842 1.542 H3 XXX 44 XXX HO3 HO8 H 0 1 N Y N 17.675 15.615 38.904 -4.748 1.247 1.422 HO3 XXX 45 XXX H2 H15 H 0 1 N N N 18.765 13.713 36.969 -2.632 2.021 -1.273 H2 XXX 46 XXX HN41 HN41 H 0 0 N N N 19.214 15.957 35.903 -1.003 3.457 -0.381 HN41 XXX 47 XXX HN42 HN42 H 0 0 N N N 18.122 16.077 37.194 -2.414 3.592 0.402 HN42 XXX 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XXX O3A C4A SING N N 1 XXX O3A HO3A SING N N 2 XXX C4A C5A SING N N 3 XXX C4A C9 SING N N 4 XXX C4A H4A SING N N 5 XXX C5A O4A SING N N 6 XXX C5A C6A SING N N 7 XXX C5A H5A SING N N 8 XXX O4A HO4A SING N N 9 XXX C6A N1 SING N N 10 XXX C6A C7 SING N N 11 XXX C6A H6 SING N N 12 XXX N1 HN11 SING N N 13 XXX N1 HN12 SING N N 14 XXX C7 C8 SING N N 15 XXX C7 H71 SING N N 16 XXX C7 H72 SING N N 17 XXX C8 N2 SING N N 18 XXX C8 C9 SING N N 19 XXX C8 H8 SING N N 20 XXX N2 HN21 SING N N 21 XXX N2 HN22 SING N N 22 XXX C9 O1 SING N N 23 XXX C9 H9 SING N N 24 XXX O1 C1 SING N N 25 XXX C1 O5 SING N N 26 XXX C1 C2 SING N N 27 XXX C1 H1 SING N N 28 XXX O5 C5 SING N N 29 XXX C5 C6 SING N N 30 XXX C5 C4 SING N N 31 XXX C5 H5 SING N N 32 XXX C6 N3 SING N N 33 XXX C6 H61 SING N N 34 XXX C6 H62 SING N N 35 XXX N3 HN31 SING N N 36 XXX N3 HN32 SING N N 37 XXX C4 O4 SING N N 38 XXX C4 C3 SING N N 39 XXX C4 H4 SING N N 40 XXX O4 HO4 SING N N 41 XXX C3 O3 SING N N 42 XXX C3 C2 SING N N 43 XXX C3 H3 SING N N 44 XXX O3 HO3 SING N N 45 XXX C2 N4 SING N N 46 XXX C2 H2 SING N N 47 XXX N4 HN41 SING N N 48 XXX N4 HN42 SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XXX SMILES ACDLabs 10.04 "O(C1C(O)C(O)C(N)CC1N)C2OC(C(O)C(O)C2N)CN" XXX SMILES_CANONICAL CACTVS 3.341 "NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O)[C@H]2O)[C@H](N)[C@@H](O)[C@@H]1O" XXX SMILES CACTVS 3.341 "NC[CH]1O[CH](O[CH]2[CH](N)C[CH](N)[CH](O)[CH]2O)[CH](N)[CH](O)[CH]1O" XXX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1N)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CN)O)O)N)O)O)N" XXX SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C(C1N)OC2C(C(C(C(O2)CN)O)O)N)O)O)N" XXX InChI InChI 1.03 "InChI=1S/C12H26N4O6/c13-2-5-8(18)9(19)6(16)12(21-5)22-11-4(15)1-3(14)7(17)10(11)20/h3-12,17-20H,1-2,13-16H2/t3-,4+,5-,6-,7+,8-,9-,10-,11-,12-/m1/s1" XXX InChIKey InChI 1.03 SYJXFKPQNSDJLI-HKEUSBCWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XXX "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside" XXX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4R,5R,6R)-5-amino-2-(aminomethyl)-6-[(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxy-cyclohexyl]oxy-oxane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XXX "Create component" 2005-11-03 RCSB XXX "Modify descriptor" 2011-06-04 RCSB XXX "Modify synonyms" 2020-05-26 PDBE XXX "Other modification" 2020-07-03 RCSB XXX "Modify name" 2020-07-17 RCSB XXX "Modify synonyms" 2020-07-17 RCSB XXX "Modify internal type" 2020-07-17 RCSB XXX "Modify linking type" 2020-07-17 RCSB XXX "Modify atom id" 2020-07-17 RCSB XXX "Modify component atom id" 2020-07-17 RCSB XXX "Modify leaving atom flag" 2020-07-17 RCSB # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support XXX "CARBOHYDRATE ISOMER" D PDB ? XXX "CARBOHYDRATE RING" pyranose PDB ? XXX "CARBOHYDRATE ANOMER" alpha PDB ? XXX "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 XXX ;(2R,3S,4R,5R,6R)-6-((1R,2R,3S,4R,6S)-4,6-DIAMINO-2,3-DIHYDROXYCYCLOHEXYLOXY)-5-AMINO-2-(AMINOMETHYL)-TETRAHYDRO-2H-PYRA N-3,4-DIOL ; PDB ? 2 XXX "NEOMYCIN A" PDB ? 3 XXX NEAMINE PDB ? 4 XXX "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucoside" PDB ? 5 XXX "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-D-glucoside" PDB ? 6 XXX "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-glucoside" PDB ? ##