data_XY1 # _chem_comp.id XY1 _chem_comp.name "4-[(E)-[5-(2-azanylethyl)-2-oxidanyl-phenyl]diazenyl]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H15 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-[5-(2-Aminoethyl)-2-hydroxyphenylazo]-benzoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-03-12 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 285.298 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XY1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4BEO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XY1 C C29 C 0 1 N N N Y N Y 32.218 -39.524 46.496 -5.782 -0.450 0.080 C29 XY1 1 XY1 O O30 O 0 1 N N N Y N Y 32.846 -40.287 47.211 -6.352 -1.514 -0.054 O30 XY1 2 XY1 C26 C26 C 0 1 Y N N Y N N 32.063 -38.072 46.896 -4.308 -0.389 0.011 C26 XY1 3 XY1 C25 C25 C 0 1 Y N N Y N N 30.991 -37.374 46.349 -3.570 -1.556 -0.209 C25 XY1 4 XY1 C24 C24 C 0 1 Y N N Y N N 30.787 -36.037 46.661 -2.201 -1.499 -0.273 C24 XY1 5 XY1 C27 C27 C 0 1 Y N N N N N 32.928 -37.407 47.775 -3.652 0.836 0.159 C27 XY1 6 XY1 C28 C28 C 0 1 Y N N N N N 32.721 -36.054 48.088 -2.284 0.894 0.095 C28 XY1 7 XY1 C23 C23 C 0 1 Y N N Y N N 31.641 -35.373 47.528 -1.544 -0.274 -0.119 C23 XY1 8 XY1 N21 N21 N 0 1 N N N Y N N 31.351 -34.069 47.758 -0.181 -0.218 -0.183 N21 XY1 9 XY1 N20 N20 N 0 1 N N N Y N N 30.291 -33.694 47.104 0.426 0.912 -0.041 N20 XY1 10 XY1 C18 C18 C 0 1 Y N N Y N N 29.711 -32.469 47.084 1.786 0.969 -0.104 C18 XY1 11 XY1 C17 C17 C 0 1 Y N N N N N 30.180 -31.388 47.808 2.450 2.196 0.049 C17 XY1 12 XY1 O22 O22 O 0 1 N N N N N N 31.291 -31.503 48.592 1.741 3.333 0.262 O22 XY1 13 XY1 C16 C16 C 0 1 Y N N N N N 29.506 -30.171 47.729 3.833 2.241 -0.016 C16 XY1 14 XY1 C15 C15 C 0 1 Y N N N N N 28.376 -30.038 46.930 4.555 1.082 -0.232 C15 XY1 15 XY1 C19 C19 C 0 1 Y N N Y N N 28.586 -32.336 46.289 2.529 -0.197 -0.317 C19 XY1 16 XY1 C9 C9 C 0 1 Y N N Y N N 27.923 -31.127 46.203 3.904 -0.131 -0.385 C9 XY1 17 XY1 C14 C14 C 0 1 N N N Y N N 26.684 -31.035 45.342 4.704 -1.387 -0.621 C14 XY1 18 XY1 C12 C12 C 0 1 N N N Y N N 26.886 -30.307 44.019 5.050 -2.031 0.723 C12 XY1 19 XY1 N N3 N 0 1 N N N Y Y N 25.673 -30.664 43.295 5.829 -3.254 0.494 N3 XY1 20 XY1 OXT OXT O 0 1 N Y N Y N Y 33.188 -39.889 45.149 -6.494 0.675 0.286 OXT XY1 21 XY1 HXT HXT H 0 1 N Y N Y N Y 33.849 -40.525 45.397 -7.456 0.586 0.320 HXT XY1 22 XY1 H25 H25 H 0 1 N N N Y N N 30.312 -37.877 45.676 -4.078 -2.501 -0.327 H25 XY1 23 XY1 H27 H27 H 0 1 N N N N N N 33.759 -37.938 48.215 -4.223 1.738 0.325 H27 XY1 24 XY1 H24 H24 H 0 1 N N N Y N N 29.953 -35.508 46.223 -1.631 -2.401 -0.442 H24 XY1 25 XY1 H28 H28 H 0 1 N N N N N N 33.395 -35.543 48.759 -1.777 1.840 0.210 H28 XY1 26 XY1 H19 H19 H 0 1 N N N Y N N 28.223 -33.186 45.730 2.027 -1.146 -0.432 H19 XY1 27 XY1 H22 H22 H 0 1 N N N N N N 31.469 -30.671 49.014 1.581 3.529 1.196 H22 XY1 28 XY1 H16 H16 H 0 1 N N N N N N 29.865 -29.323 48.294 4.348 3.183 0.101 H16 XY1 29 XY1 H15 H15 H 0 1 N N N N N N 27.855 -29.093 46.876 5.633 1.123 -0.283 H15 XY1 30 XY1 H141 H141 H 0 0 N N N Y N N 26.341 -32.057 45.123 4.117 -2.084 -1.218 H141 XY1 31 XY1 H142 H142 H 0 0 N N N Y N N 25.908 -30.503 45.912 5.623 -1.138 -1.151 H142 XY1 32 XY1 H121 H121 H 0 0 N N N Y N N 26.959 -29.219 44.167 5.636 -1.333 1.321 H121 XY1 33 XY1 H122 H122 H 0 0 N N N Y N N 27.785 -30.667 43.497 4.131 -2.280 1.254 H122 XY1 34 XY1 H H31N H 0 0 N N N Y Y N 25.686 -30.238 42.391 6.655 -3.060 -0.053 H31N XY1 35 XY1 H2 H32N H 0 0 N Y N Y Y N 25.625 -31.658 43.194 6.070 -3.699 1.367 H32N XY1 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XY1 C O DOUB N N 1 XY1 C C26 SING N N 2 XY1 C OXT SING N N 3 XY1 C26 C25 SING Y N 4 XY1 C26 C27 DOUB Y N 5 XY1 C25 C24 DOUB Y N 6 XY1 C24 C23 SING Y N 7 XY1 C27 C28 SING Y N 8 XY1 C28 C23 DOUB Y N 9 XY1 C23 N21 SING N N 10 XY1 N21 N20 DOUB N N 11 XY1 N20 C18 SING N N 12 XY1 C18 C17 SING Y N 13 XY1 C18 C19 DOUB Y N 14 XY1 C17 O22 SING N N 15 XY1 C17 C16 DOUB Y N 16 XY1 C16 C15 SING Y N 17 XY1 C15 C9 DOUB Y N 18 XY1 C19 C9 SING Y N 19 XY1 C9 C14 SING N N 20 XY1 C14 C12 SING N N 21 XY1 C12 N SING N N 22 XY1 OXT HXT SING N N 23 XY1 C25 H25 SING N N 24 XY1 C27 H27 SING N N 25 XY1 C24 H24 SING N N 26 XY1 C28 H28 SING N N 27 XY1 C19 H19 SING N N 28 XY1 O22 H22 SING N N 29 XY1 C16 H16 SING N N 30 XY1 C15 H15 SING N N 31 XY1 C14 H141 SING N N 32 XY1 C14 H142 SING N N 33 XY1 C12 H121 SING N N 34 XY1 C12 H122 SING N N 35 XY1 N H SING N N 36 XY1 N H2 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XY1 SMILES ACDLabs 12.01 "O=C(O)c2ccc(/N=N/c1cc(ccc1O)CCN)cc2" XY1 InChI InChI 1.03 "InChI=1S/C15H15N3O3/c16-8-7-10-1-6-14(19)13(9-10)18-17-12-4-2-11(3-5-12)15(20)21/h1-6,9,19H,7-8,16H2,(H,20,21)/b18-17+" XY1 InChIKey InChI 1.03 DJIUQBSMFISUJY-ISLYRVAYSA-N XY1 SMILES_CANONICAL CACTVS 3.385 "NCCc1ccc(O)c(c1)N=Nc2ccc(cc2)C(O)=O" XY1 SMILES CACTVS 3.385 "NCCc1ccc(O)c(c1)N=Nc2ccc(cc2)C(O)=O" XY1 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1C(=O)O)/N=N/c2cc(ccc2O)CCN" XY1 SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1C(=O)O)N=Nc2cc(ccc2O)CCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XY1 "SYSTEMATIC NAME" ACDLabs 12.01 "4-{(E)-[5-(2-aminoethyl)-2-hydroxyphenyl]diazenyl}benzoic acid" XY1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "4-[(E)-[5-(2-azanylethyl)-2-oxidanyl-phenyl]diazenyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XY1 "Create component" 2013-03-12 EBI XY1 "Modify synonyms" 2013-03-15 EBI XY1 "Initial release" 2014-03-26 RCSB XY1 "Modify descriptor" 2014-09-05 RCSB XY1 "Modify synonyms" 2020-06-05 PDBE XY1 "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XY1 _pdbx_chem_comp_synonyms.name "4-[5-(2-Aminoethyl)-2-hydroxyphenylazo]-benzoic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #