data_XY6 # _chem_comp.id XY6 _chem_comp.name 2,3-di-O-sulfo-beta-D-xylopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O11 S2" _chem_comp.mon_nstd_parent_comp_id XYP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-09 _chem_comp.pdbx_modified_date 2023-07-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 310.256 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E07 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XY6 C1 C1 C 0 1 N N R 23.904 7.150 -20.152 1.321 -1.868 0.574 C1 XY6 1 XY6 C2 C2 C 0 1 N N R 24.718 7.355 -18.839 0.759 -0.598 -0.069 C2 XY6 2 XY6 C3 C3 C 0 1 N N S 23.930 8.123 -17.748 -0.768 -0.605 0.055 C3 XY6 3 XY6 C4 C4 C 0 1 N N R 22.420 7.715 -17.682 -1.315 -1.878 -0.598 C4 XY6 4 XY6 C5 C5 C 0 1 N N N 21.867 7.635 -19.102 -0.673 -3.099 0.065 C5 XY6 5 XY6 O5 O1 O 0 1 N N N 22.588 6.758 -19.908 0.748 -3.014 -0.059 O5 XY6 6 XY6 O4 O2 O 0 1 N N N 22.297 6.474 -17.041 -2.733 -1.931 -0.425 O4 XY6 7 XY6 O2 O3 O 0 1 N N N 24.938 6.108 -18.322 1.287 0.550 0.600 O2 XY6 8 XY6 O24 O4 O 0 1 N N N 27.221 6.424 -17.710 3.294 0.046 -0.529 O24 XY6 9 XY6 O25 O5 O 0 1 N N N 25.747 5.898 -15.945 2.044 1.886 -1.309 O25 XY6 10 XY6 O26 O6 O 0 1 N N N 26.323 4.245 -17.594 3.021 2.131 0.823 O26 XY6 11 XY6 O3 O7 O 0 1 N N N 23.961 9.473 -18.081 -1.306 0.541 -0.607 O3 XY6 12 XY6 O29 O8 O 0 1 N N N 22.705 11.535 -17.764 -3.053 2.111 -0.814 O29 XY6 13 XY6 O30 O9 O 0 1 N N N 24.966 11.512 -17.081 -3.305 0.018 0.529 O30 XY6 14 XY6 O31 O10 O 0 1 N N N 23.377 10.258 -15.863 -2.064 1.864 1.312 O31 XY6 15 XY6 S23 S1 S 0 1 N N N 26.114 5.621 -17.285 2.518 1.144 -0.068 S23 XY6 16 XY6 S28 S2 S 0 1 N N N 23.741 10.781 -17.136 -2.539 1.124 0.069 S28 XY6 17 XY6 O1 O11 O 0 1 N Y N 23.840 8.378 -20.900 2.741 -1.895 0.413 O1 XY6 18 XY6 H1 H1 H 0 1 N N N 24.419 6.385 -20.751 1.076 -1.878 1.636 H1 XY6 19 XY6 H2 H2 H 0 1 N N N 25.654 7.887 -19.065 1.040 -0.567 -1.121 H2 XY6 20 XY6 H3 H3 H 0 1 N N N 24.394 7.938 -16.768 -1.048 -0.586 1.108 H3 XY6 21 XY6 H4 H4 H 0 1 N N N 21.873 8.493 -17.129 -1.078 -1.873 -1.662 H4 XY6 22 XY6 H51 H5 H 0 1 N N N 21.904 8.638 -19.552 -0.945 -3.125 1.120 H51 XY6 23 XY6 H52 H6 H 0 1 N N N 20.823 7.293 -19.055 -1.027 -4.007 -0.424 H52 XY6 24 XY6 HO4 H7 H 0 1 N N N 22.644 6.537 -16.159 -3.148 -2.713 -0.815 HO4 XY6 25 XY6 HO1 H8 H 0 1 N N N 24.721 8.681 -21.088 3.166 -2.675 0.796 HO1 XY6 26 XY6 H5 H9 H 0 1 N N N 26.318 6.571 -15.593 2.755 2.306 -1.812 H5 XY6 27 XY6 H6 H10 H 0 1 N N N 24.032 10.503 -15.220 -2.776 2.276 1.820 H6 XY6 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XY6 C1 O5 SING N N 1 XY6 C1 C2 SING N N 2 XY6 O5 C5 SING N N 3 XY6 C5 C4 SING N N 4 XY6 C2 O2 SING N N 5 XY6 C2 C3 SING N N 6 XY6 O2 S23 SING N N 7 XY6 O3 C3 SING N N 8 XY6 O3 S28 SING N N 9 XY6 O29 S28 DOUB N N 10 XY6 C3 C4 SING N N 11 XY6 O24 S23 DOUB N N 12 XY6 C4 O4 SING N N 13 XY6 O26 S23 DOUB N N 14 XY6 S23 O25 SING N N 15 XY6 S28 O30 DOUB N N 16 XY6 S28 O31 SING N N 17 XY6 C1 O1 SING N N 18 XY6 C1 H1 SING N N 19 XY6 C2 H2 SING N N 20 XY6 C3 H3 SING N N 21 XY6 C4 H4 SING N N 22 XY6 C5 H51 SING N N 23 XY6 C5 H52 SING N N 24 XY6 O4 HO4 SING N N 25 XY6 O1 HO1 SING N N 26 XY6 O25 H5 SING N N 27 XY6 O31 H6 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XY6 SMILES ACDLabs 12.01 "OC1OCC(O)C(OS(=O)(=O)O)C1OS(=O)(=O)O" XY6 InChI InChI 1.06 "InChI=1S/C5H10O11S2/c6-2-1-14-5(7)4(16-18(11,12)13)3(2)15-17(8,9)10/h2-7H,1H2,(H,8,9,10)(H,11,12,13)/t2-,3+,4-,5-/m1/s1" XY6 InChIKey InChI 1.06 PCTZUCFLPZUYKQ-KKQCNMDGSA-N XY6 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CO[C@@H](O)[C@H](O[S](O)(=O)=O)[C@H]1O[S](O)(=O)=O" XY6 SMILES CACTVS 3.385 "O[CH]1CO[CH](O)[CH](O[S](O)(=O)=O)[CH]1O[S](O)(=O)=O" XY6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]([C@H]([C@@H](O1)O)OS(=O)(=O)O)OS(=O)(=O)O)O" XY6 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(O1)O)OS(=O)(=O)O)OS(=O)(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XY6 "SYSTEMATIC NAME" ACDLabs 12.01 2,3-di-O-sulfo-beta-D-xylopyranose XY6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{R},4~{S},5~{R})-2,5-bis(oxidanyl)-3-sulfooxy-oxan-4-yl] hydrogen sulfate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XY6 "Create component" 2022-08-09 RCSB XY6 "Initial release" 2023-07-12 RCSB # _pdbx_chem_comp_related.comp_id XY6 _pdbx_chem_comp_related.related_comp_id XYP _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 XY6 C1 XYP C1 "Carbohydrate core" 2 XY6 C2 XYP C2 "Carbohydrate core" 3 XY6 C3 XYP C3 "Carbohydrate core" 4 XY6 C4 XYP C4 "Carbohydrate core" 5 XY6 C5 XYP C5 "Carbohydrate core" 6 XY6 O5 XYP O5 "Carbohydrate core" 7 XY6 O4 XYP O4 "Carbohydrate core" 8 XY6 O2 XYP O2 "Carbohydrate core" 9 XY6 O3 XYP O3 "Carbohydrate core" 10 XY6 O1 XYP O1 "Carbohydrate core" 11 XY6 H1 XYP H1 "Carbohydrate core" 12 XY6 H2 XYP H2 "Carbohydrate core" 13 XY6 H3 XYP H3 "Carbohydrate core" 14 XY6 H4 XYP H4 "Carbohydrate core" 15 XY6 H51 XYP H51 "Carbohydrate core" 16 XY6 H52 XYP H52 "Carbohydrate core" 17 XY6 HO4 XYP HO4 "Carbohydrate core" 18 XY6 HO1 XYP HO1 "Carbohydrate core" #