data_XY8 # _chem_comp.id XY8 _chem_comp.name "3-{4-[(2,4-difluorophenyl)methyl]piperazin-1-yl}-7-methyl-N-(propan-2-yl)pyrido[3,4-b]pyrazin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H26 F2 N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-05 _chem_comp.pdbx_modified_date 2024-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.479 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XY8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8T1V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XY8 C01 C1 C 0 1 N N N N N N 12.979 -10.467 3.784 -4.226 3.743 0.633 C01 XY8 1 XY8 C02 C2 C 0 1 N N N N N N 12.141 -10.727 5.030 -3.537 3.295 -0.658 C02 XY8 2 XY8 C03 C3 C 0 1 N N N N N N 10.663 -10.441 4.767 -2.960 4.515 -1.378 C03 XY8 3 XY8 C05 C4 C 0 1 Y N N N N N 12.503 -10.144 7.465 -2.730 1.014 -0.171 C05 XY8 4 XY8 C07 C5 C 0 1 Y N N N N N 12.167 -11.704 9.173 -4.203 -0.745 -0.254 C07 XY8 5 XY8 C08 C6 C 0 1 Y N N N N N 12.248 -10.672 10.119 -3.176 -1.628 0.163 C08 XY8 6 XY8 C09 C7 C 0 1 Y N N N N N 12.108 -11.020 11.459 -3.482 -2.988 0.315 C09 XY8 7 XY8 C11 C8 C 0 1 Y N N N N N 11.826 -13.258 10.983 -5.677 -2.616 -0.319 C11 XY8 8 XY8 C12 C9 C 0 1 N N N N N N 11.597 -14.655 11.472 -7.044 -3.197 -0.576 C12 XY8 9 XY8 C13 C10 C 0 1 Y N N N N N 11.954 -13.010 9.615 -5.481 -1.279 -0.495 C13 XY8 10 XY8 C15 C11 C 0 1 Y N N N N N 12.585 -9.106 8.417 -1.702 0.132 0.246 C15 XY8 11 XY8 C17 C12 C 0 1 N N N N N N 13.440 -6.886 9.019 0.550 0.038 -0.433 C17 XY8 12 XY8 C18 C13 C 0 1 N N N N N N 13.855 -5.565 8.376 1.924 0.666 -0.183 C18 XY8 13 XY8 C20 C14 C 0 1 N N N N N N 12.938 -3.525 7.186 3.666 0.956 1.474 C20 XY8 14 XY8 C21 C15 C 0 1 Y N N N N N 11.669 -2.746 6.949 4.674 0.161 0.684 C21 XY8 15 XY8 C22 C16 C 0 1 Y N N N N N 11.154 -1.875 7.919 4.867 0.430 -0.660 C22 XY8 16 XY8 C24 C17 C 0 1 Y N N N N N 9.977 -1.168 7.706 5.792 -0.300 -1.385 C24 XY8 17 XY8 C25 C18 C 0 1 Y N N N N N 9.298 -1.338 6.507 6.524 -1.298 -0.766 C25 XY8 18 XY8 C27 C19 C 0 1 Y N N N N N 9.778 -2.196 5.528 6.329 -1.565 0.579 C27 XY8 19 XY8 C28 C20 C 0 1 Y N N N N N 10.959 -2.897 5.752 5.409 -0.832 1.304 C28 XY8 20 XY8 C29 C21 C 0 1 N N N N N N 12.092 -5.854 6.659 1.338 1.020 2.139 C29 XY8 21 XY8 C30 C22 C 0 1 N N N N N N 11.653 -7.143 7.337 -0.036 0.393 1.888 C30 XY8 22 XY8 F23 F1 F 0 1 N N N N N N 11.805 -1.707 9.082 4.151 1.404 -1.264 F23 XY8 23 XY8 F26 F2 F 0 1 N N N N N N 8.160 -0.664 6.284 7.427 -2.012 -1.472 F26 XY8 24 XY8 N04 N1 N 0 1 N N N N N N 12.638 -9.843 6.089 -2.455 2.361 -0.335 N04 XY8 25 XY8 N06 N2 N 0 1 Y N N N N N 12.295 -11.424 7.860 -3.944 0.559 -0.409 N06 XY8 26 XY8 N10 N3 N 0 1 Y N N N N N 11.901 -12.275 11.909 -4.699 -3.420 0.071 N10 XY8 27 XY8 N14 N4 N 0 1 Y N N N N N 12.453 -9.396 9.735 -1.946 -1.153 0.401 N14 XY8 28 XY8 N16 N5 N 0 1 N N N N N N 12.797 -7.754 8.018 -0.430 0.625 0.492 N16 XY8 29 XY8 N19 N6 N 0 1 N N N N N N 12.657 -4.923 7.710 2.318 0.434 1.214 N19 XY8 30 XY8 H1 H1 H 0 1 N N N N N N 14.036 -10.680 4.001 -3.501 4.236 1.279 H1 XY8 31 XY8 H2 H2 H 0 1 N N N N N N 12.634 -11.118 2.968 -5.031 4.437 0.393 H2 XY8 32 XY8 H3 H3 H 0 1 N N N N N N 12.872 -9.414 3.483 -4.638 2.873 1.145 H3 XY8 33 XY8 H4 H4 H 0 1 N N N N N N 12.257 -11.778 5.332 -4.263 2.801 -1.304 H4 XY8 34 XY8 H5 H5 H 0 1 N N N N N N 10.083 -10.637 5.681 -2.235 5.009 -0.731 H5 XY8 35 XY8 H6 H6 H 0 1 N N N N N N 10.540 -9.388 4.473 -2.469 4.196 -2.297 H6 XY8 36 XY8 H7 H7 H 0 1 N N N N N N 10.302 -11.092 3.957 -3.765 5.210 -1.618 H7 XY8 37 XY8 H8 H8 H 0 1 N N N N N N 12.169 -10.229 12.191 -2.717 -3.681 0.631 H8 XY8 38 XY8 H9 H9 H 0 1 N N N N N N 11.523 -14.652 12.570 -7.628 -3.171 0.344 H9 XY8 39 XY8 H10 H10 H 0 1 N N N N N N 10.662 -15.045 11.043 -7.549 -2.612 -1.344 H10 XY8 40 XY8 H11 H11 H 0 1 N N N N N N 12.437 -15.294 11.163 -6.943 -4.229 -0.913 H11 XY8 41 XY8 H12 H12 H 0 1 N N N N N N 11.889 -13.822 8.906 -6.292 -0.642 -0.814 H12 XY8 42 XY8 H13 H13 H 0 1 N N N N N N 12.732 -6.686 9.837 0.243 0.234 -1.461 H13 XY8 43 XY8 H14 H14 H 0 1 N N N N N N 14.331 -7.391 9.421 0.607 -1.038 -0.269 H14 XY8 44 XY8 H15 H15 H 0 1 N N N N N N 14.634 -5.754 7.623 2.658 0.211 -0.848 H15 XY8 45 XY8 H16 H16 H 0 1 N N N N N N 14.249 -4.890 9.150 1.875 1.737 -0.374 H16 XY8 46 XY8 H17 H17 H 0 1 N N N N N N 13.488 -3.605 6.237 3.889 0.871 2.538 H17 XY8 47 XY8 H18 H18 H 0 1 N N N N N N 13.553 -2.987 7.922 3.714 2.003 1.176 H18 XY8 48 XY8 H19 H19 H 0 1 N N N N N N 9.596 -0.497 8.461 5.943 -0.091 -2.434 H19 XY8 49 XY8 H20 H20 H 0 1 N N N N N N 9.240 -2.319 4.600 6.903 -2.341 1.064 H20 XY8 50 XY8 H21 H21 H 0 1 N N N N N N 11.333 -3.567 4.992 5.258 -1.041 2.352 H21 XY8 51 XY8 H22 H22 H 0 1 N N N N N N 12.863 -6.075 5.907 1.282 2.097 1.975 H22 XY8 52 XY8 H23 H23 H 0 1 N N N N N N 11.228 -5.380 6.170 1.645 0.825 3.166 H23 XY8 53 XY8 H24 H24 H 0 1 N N N N N N 10.866 -6.920 8.072 0.014 -0.679 2.079 H24 XY8 54 XY8 H25 H25 H 0 1 N N N N N N 11.262 -7.840 6.581 -0.770 0.847 2.554 H25 XY8 55 XY8 H26 H26 H 0 1 N N N N N N 13.619 -9.738 5.924 -1.547 2.687 -0.237 H26 XY8 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XY8 C01 C02 SING N N 1 XY8 C03 C02 SING N N 2 XY8 C02 N04 SING N N 3 XY8 C27 C28 DOUB Y N 4 XY8 C27 C25 SING Y N 5 XY8 C28 C21 SING Y N 6 XY8 N04 C05 SING N N 7 XY8 F26 C25 SING N N 8 XY8 C25 C24 DOUB Y N 9 XY8 C29 C30 SING N N 10 XY8 C29 N19 SING N N 11 XY8 C21 C20 SING N N 12 XY8 C21 C22 DOUB Y N 13 XY8 C20 N19 SING N N 14 XY8 C30 N16 SING N N 15 XY8 C05 N06 DOUB Y N 16 XY8 C05 C15 SING Y N 17 XY8 C24 C22 SING Y N 18 XY8 N19 C18 SING N N 19 XY8 N06 C07 SING Y N 20 XY8 C22 F23 SING N N 21 XY8 N16 C15 SING N N 22 XY8 N16 C17 SING N N 23 XY8 C18 C17 SING N N 24 XY8 C15 N14 DOUB Y N 25 XY8 C07 C13 DOUB Y N 26 XY8 C07 C08 SING Y N 27 XY8 C13 C11 SING Y N 28 XY8 N14 C08 SING Y N 29 XY8 C08 C09 DOUB Y N 30 XY8 C11 C12 SING N N 31 XY8 C11 N10 DOUB Y N 32 XY8 C09 N10 SING Y N 33 XY8 C01 H1 SING N N 34 XY8 C01 H2 SING N N 35 XY8 C01 H3 SING N N 36 XY8 C02 H4 SING N N 37 XY8 C03 H5 SING N N 38 XY8 C03 H6 SING N N 39 XY8 C03 H7 SING N N 40 XY8 C09 H8 SING N N 41 XY8 C12 H9 SING N N 42 XY8 C12 H10 SING N N 43 XY8 C12 H11 SING N N 44 XY8 C13 H12 SING N N 45 XY8 C17 H13 SING N N 46 XY8 C17 H14 SING N N 47 XY8 C18 H15 SING N N 48 XY8 C18 H16 SING N N 49 XY8 C20 H17 SING N N 50 XY8 C20 H18 SING N N 51 XY8 C24 H19 SING N N 52 XY8 C27 H20 SING N N 53 XY8 C28 H21 SING N N 54 XY8 C29 H22 SING N N 55 XY8 C29 H23 SING N N 56 XY8 C30 H24 SING N N 57 XY8 C30 H25 SING N N 58 XY8 N04 H26 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XY8 SMILES ACDLabs 12.01 "CC(C)Nc1nc2cc(C)ncc2nc1N1CCN(Cc2ccc(F)cc2F)CC1" XY8 InChI InChI 1.06 "InChI=1S/C22H26F2N6/c1-14(2)26-21-22(28-20-12-25-15(3)10-19(20)27-21)30-8-6-29(7-9-30)13-16-4-5-17(23)11-18(16)24/h4-5,10-12,14H,6-9,13H2,1-3H3,(H,26,27)" XY8 InChIKey InChI 1.06 RWZKAEHGFIQDFV-UHFFFAOYSA-N XY8 SMILES_CANONICAL CACTVS 3.385 "CC(C)Nc1nc2cc(C)ncc2nc1N3CCN(CC3)Cc4ccc(F)cc4F" XY8 SMILES CACTVS 3.385 "CC(C)Nc1nc2cc(C)ncc2nc1N3CCN(CC3)Cc4ccc(F)cc4F" XY8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cn1)nc(c(n2)NC(C)C)N3CCN(CC3)Cc4ccc(cc4F)F" XY8 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cn1)nc(c(n2)NC(C)C)N3CCN(CC3)Cc4ccc(cc4F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XY8 "SYSTEMATIC NAME" ACDLabs 12.01 "3-{4-[(2,4-difluorophenyl)methyl]piperazin-1-yl}-7-methyl-N-(propan-2-yl)pyrido[3,4-b]pyrazin-2-amine" XY8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[4-[[2,4-bis(fluoranyl)phenyl]methyl]piperazin-1-yl]-7-methyl-~{N}-propan-2-yl-pyrido[3,4-b]pyrazin-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XY8 "Create component" 2023-06-05 RCSB XY8 "Initial release" 2024-12-04 RCSB #