data_XYB # _chem_comp.id XYB _chem_comp.name 4-O-beta-D-xylopyranosyl-beta-D-xylopyranose _chem_comp.type SACCHARIDE _chem_comp.pdbx_type ATOMS _chem_comp.formula "C10 H18 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms xylobiose _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-05-29 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 282.245 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XYB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VSU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XYB "O4'" "O4'" O 0 1 N N N 20.914 -6.211 63.766 -0.022 0.443 -0.693 "O4'" XYB 1 XYB C1 C1 C 0 1 N N S 22.275 -6.654 63.898 -1.220 0.263 0.064 C1 XYB 2 XYB C2 C2 C 0 1 N N R 22.755 -7.354 62.629 -2.418 0.762 -0.749 C2 XYB 3 XYB C3 C3 C 0 1 N N S 24.098 -6.853 62.098 -3.704 0.511 0.044 C3 XYB 4 XYB C4 C4 C 0 1 N N R 24.241 -5.337 62.135 -3.805 -0.982 0.372 C4 XYB 5 XYB C5 C5 C 0 1 N N N 23.065 -4.733 62.878 -2.554 -1.413 1.142 C5 XYB 6 XYB O2 O2 O 0 1 N N N 22.805 -8.776 62.846 -2.276 2.162 -0.999 O2 XYB 7 XYB O3 O3 O 0 1 N N N 24.237 -7.267 60.730 -4.832 0.905 -0.739 O3 XYB 8 XYB O4 O4 O 0 1 N N N 25.434 -4.990 62.855 -4.964 -1.217 1.174 O4 XYB 9 XYB O5 O5 O 0 1 N N N 23.008 -5.442 64.120 -1.392 -1.124 0.361 O5 XYB 10 XYB "C4'" "C4'" C 0 1 N N R 19.907 -7.158 64.147 1.171 0.112 0.020 "C4'" XYB 11 XYB "C5'" "C5'" C 0 1 N N N 19.087 -7.509 62.913 1.698 1.355 0.742 "C5'" XYB 12 XYB "O5'" "O5'" O 0 1 N N N 18.416 -6.334 62.426 2.922 1.036 1.406 "O5'" XYB 13 XYB "C1'" "C1'" C 0 1 N N R 17.415 -5.868 63.347 3.968 0.609 0.531 "C1'" XYB 14 XYB "O1'" "O1'" O 0 1 N Y N 16.107 -6.073 62.787 5.147 0.343 1.292 "O1'" XYB 15 XYB "C2'" "C2'" C 0 1 N N R 17.546 -6.585 64.685 3.532 -0.664 -0.200 "C2'" XYB 16 XYB "O2'" "O2'" O 0 1 N N N 16.698 -5.976 65.670 4.553 -1.060 -1.119 "O2'" XYB 17 XYB "C3'" "C3'" C 0 1 N N R 18.986 -6.496 65.161 2.234 -0.386 -0.964 "C3'" XYB 18 XYB "O3'" "O3'" O 0 1 N N N 19.088 -7.159 66.428 1.781 -1.589 -1.590 "O3'" XYB 19 XYB H1 H1 H 0 1 N N N 22.381 -7.336 64.755 -1.151 0.829 0.993 H1 XYB 20 XYB H2 H2 H 0 1 N N N 22.006 -7.154 61.848 -2.463 0.226 -1.697 H2 XYB 21 XYB H3 H3 H 0 1 N N N 24.901 -7.296 62.705 -3.680 1.087 0.969 H3 XYB 22 XYB H4 H4 H 0 1 N N N 24.274 -4.943 61.108 -3.880 -1.554 -0.553 H4 XYB 23 XYB H5 H5 H 0 1 N N N 23.228 -3.659 63.053 -2.503 -0.870 2.085 H5 XYB 24 XYB H6 H6 H 0 1 N N N 22.134 -4.874 62.309 -2.601 -2.484 1.341 H6 XYB 25 XYB H7 H7 H 0 1 N N N 21.966 -9.076 63.176 -1.479 2.394 -1.494 H7 XYB 26 XYB H8 H8 H 0 1 N N N 24.152 -8.212 60.674 -5.683 0.767 -0.300 H8 XYB 27 XYB H9 H9 H 0 1 N N N 25.526 -4.045 62.880 -5.091 -2.144 1.420 H9 XYB 28 XYB H10 H10 H 0 1 N N N 20.352 -8.067 64.577 0.955 -0.670 0.748 H10 XYB 29 XYB H11 H11 H 0 1 N N N 18.341 -8.274 63.175 1.875 2.149 0.016 H11 XYB 30 XYB H12 H12 H 0 1 N N N 19.754 -7.900 62.130 0.963 1.689 1.474 H12 XYB 31 XYB H13 H13 H 0 1 N N N 17.564 -4.793 63.524 4.174 1.394 -0.198 H13 XYB 32 XYB H14 H14 H 0 1 N N N 15.448 -5.764 63.398 5.480 1.107 1.782 H14 XYB 33 XYB H15 H15 H 0 1 N N N 17.276 -7.643 64.552 3.365 -1.460 0.525 H15 XYB 34 XYB H16 H16 H 0 1 N N N 16.792 -6.435 66.497 5.405 -1.247 -0.703 H16 XYB 35 XYB H17 H17 H 0 1 N N N 19.266 -5.437 65.262 2.414 0.376 -1.723 H17 XYB 36 XYB H18 H18 H 0 1 N N N 18.510 -6.738 67.053 2.407 -1.960 -2.227 H18 XYB 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XYB O3 C3 SING N N 1 XYB C3 C4 SING N N 2 XYB C3 C2 SING N N 3 XYB C4 O4 SING N N 4 XYB C4 C5 SING N N 5 XYB "O5'" "C5'" SING N N 6 XYB "O5'" "C1'" SING N N 7 XYB C2 O2 SING N N 8 XYB C2 C1 SING N N 9 XYB "O1'" "C1'" SING N N 10 XYB C5 O5 SING N N 11 XYB "C5'" "C4'" SING N N 12 XYB "C1'" "C2'" SING N N 13 XYB "O4'" C1 SING N N 14 XYB "O4'" "C4'" SING N N 15 XYB C1 O5 SING N N 16 XYB "C4'" "C3'" SING N N 17 XYB "C2'" "C3'" SING N N 18 XYB "C2'" "O2'" SING N N 19 XYB "C3'" "O3'" SING N N 20 XYB C1 H1 SING N N 21 XYB C2 H2 SING N N 22 XYB C3 H3 SING N N 23 XYB C4 H4 SING N N 24 XYB C5 H5 SING N N 25 XYB C5 H6 SING N N 26 XYB O2 H7 SING N N 27 XYB O3 H8 SING N N 28 XYB O4 H9 SING N N 29 XYB "C4'" H10 SING N N 30 XYB "C5'" H11 SING N N 31 XYB "C5'" H12 SING N N 32 XYB "C1'" H13 SING N N 33 XYB "O1'" H14 SING N N 34 XYB "C2'" H15 SING N N 35 XYB "O2'" H16 SING N N 36 XYB "C3'" H17 SING N N 37 XYB "O3'" H18 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XYB SMILES ACDLabs 12.01 "O(C1COC(O)C(O)C1O)C2OCC(O)C(O)C2O" XYB InChI InChI 1.03 "InChI=1S/C10H18O9/c11-3-1-18-10(8(15)5(3)12)19-4-2-17-9(16)7(14)6(4)13/h3-16H,1-2H2/t3-,4-,5+,6+,7-,8-,9-,10+/m1/s1" XYB InChIKey InChI 1.03 LGQKSQQRKHFMLI-SJYYZXOBSA-N XYB SMILES_CANONICAL CACTVS 3.370 "O[C@@H]1CO[C@@H](O[C@@H]2CO[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O" XYB SMILES CACTVS 3.370 "O[CH]1CO[CH](O[CH]2CO[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O" XYB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@@H]([C@H]([C@@H](O1)O[C@@H]2CO[C@H]([C@@H]([C@H]2O)O)O)O)O)O" XYB SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(C(O1)OC2COC(C(C2O)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XYB "SYSTEMATIC NAME" ACDLabs 12.01 4-O-beta-D-xylopyranosyl-beta-D-xylopyranose XYB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4S,5R)-2-[(3R,4R,5R,6R)-4,5,6-tris(oxidanyl)oxan-3-yl]oxyoxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XYB "Create component" 2012-05-29 PDBJ XYB "Modify leaving atom flag" 2012-06-18 PDBJ XYB "Initial release" 2016-08-31 RCSB XYB "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XYB _pdbx_chem_comp_synonyms.name xylobiose _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##