data_XYJ # _chem_comp.id XYJ _chem_comp.name "3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]-N-{[2-(morpholin-4-yl)ethyl]sulfonyl}propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H24 N6 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-20 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 460.528 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XYJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LG7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XYJ C10 C1 C 0 1 N N N 35.398 -38.292 8.092 -1.657 2.031 -0.187 C10 XYJ 1 XYJ C13 C2 C 0 1 N N N 37.368 -39.727 5.935 -4.446 0.403 -0.023 C13 XYJ 2 XYJ C17 C3 C 0 1 N N N 40.719 -38.552 3.648 -6.455 -2.714 2.140 C17 XYJ 3 XYJ C20 C4 C 0 1 N N N 39.133 -40.713 2.784 -6.858 -2.409 -0.668 C20 XYJ 4 XYJ C26 C5 C 0 1 N N N 33.451 -32.041 11.871 7.688 0.522 1.304 C26 XYJ 5 XYJ C02 C6 C 0 1 N N N 34.049 -31.703 7.789 4.809 -1.680 -0.856 C02 XYJ 6 XYJ C03 C7 C 0 1 Y N N 33.631 -32.859 8.302 4.408 -0.448 -0.176 C03 XYJ 7 XYJ C04 C8 C 0 1 Y N N 33.435 -32.971 9.617 5.372 0.259 0.528 C04 XYJ 8 XYJ C06 C9 C 0 1 Y N N 32.992 -34.856 8.714 3.431 1.294 0.678 C06 XYJ 9 XYJ C08 C10 C 0 1 N N N 33.562 -37.440 9.684 0.764 1.753 0.271 C08 XYJ 10 XYJ C09 C11 C 0 1 N N N 35.065 -37.511 9.373 -0.464 2.633 0.510 C09 XYJ 11 XYJ C14 C12 C 0 1 N N N 37.821 -40.653 4.807 -5.647 -0.312 -0.647 C14 XYJ 12 XYJ C16 C13 C 0 1 N N N 39.848 -39.357 4.601 -6.290 -1.363 1.438 C16 XYJ 13 XYJ C19 C14 C 0 1 N N N 40.009 -39.896 1.847 -7.018 -3.750 0.054 C19 XYJ 14 XYJ C27 C15 C 0 1 N N N 34.082 -30.759 9.907 6.994 -1.354 -0.074 C27 XYJ 15 XYJ C29 C16 C 0 1 N N N 34.737 -29.367 8.017 6.523 -3.305 -1.441 C29 XYJ 16 XYJ N05 N1 N 0 1 Y N N 33.018 -34.210 9.875 4.745 1.348 1.057 N05 XYJ 17 XYJ N11 N2 N 0 1 N N N 35.846 -39.543 8.341 -2.858 2.639 -0.114 N11 XYJ 18 XYJ N15 N3 N 0 1 N N N 38.670 -39.877 3.895 -5.872 -1.587 0.047 N15 XYJ 19 XYJ N24 N4 N 0 1 Y N N 33.342 -34.030 7.735 3.235 0.226 -0.054 N24 XYJ 20 XYJ N25 N5 N 0 1 N N N 33.664 -31.922 10.417 6.663 -0.218 0.563 N25 XYJ 21 XYJ N28 N6 N 0 1 N N N 34.275 -30.651 8.588 6.098 -2.074 -0.769 N28 XYJ 22 XYJ O01 O1 O 0 1 N N N 34.232 -31.586 6.578 3.997 -2.338 -1.482 O01 XYJ 23 XYJ O18 O2 O 0 1 N N N 41.153 -39.391 2.562 -7.395 -3.511 1.413 O18 XYJ 24 XYJ O21 O3 O 0 1 N N N 37.044 -41.766 7.722 -3.720 1.750 -2.209 O21 XYJ 25 XYJ O22 O4 O 0 1 N N N 35.041 -41.124 6.388 -5.227 2.886 -0.610 O22 XYJ 26 XYJ O23 O5 O 0 1 N N N 35.268 -37.784 6.979 -1.536 1.002 -0.817 O23 XYJ 27 XYJ O30 O6 O 0 1 N N N 34.287 -29.798 10.646 8.145 -1.743 -0.021 O30 XYJ 28 XYJ S07 S1 S 0 1 N N N 32.467 -36.562 8.503 2.197 2.476 1.108 S07 XYJ 29 XYJ S12 S2 S 0 1 N N N 36.274 -40.592 7.115 -4.168 1.978 -0.880 S12 XYJ 30 XYJ H1 H1 H 0 1 N N N 38.254 -39.359 6.473 -4.644 0.593 1.031 H1 XYJ 31 XYJ H2 H2 H 0 1 N N N 36.823 -38.876 5.501 -3.560 -0.224 -0.119 H2 XYJ 32 XYJ H3 H3 H 0 1 N N N 41.597 -38.171 4.189 -5.494 -3.226 2.175 H3 XYJ 33 XYJ H4 H4 H 0 1 N N N 40.139 -37.707 3.248 -6.820 -2.555 3.155 H4 XYJ 34 XYJ H5 H5 H 0 1 N N N 38.264 -41.095 2.229 -6.516 -2.584 -1.688 H5 XYJ 35 XYJ H6 H6 H 0 1 N N N 39.714 -41.558 3.182 -7.817 -1.891 -0.690 H6 XYJ 36 XYJ H7 H7 H 0 1 N N N 33.690 -31.083 12.357 7.720 0.167 2.333 H7 XYJ 37 XYJ H8 H8 H 0 1 N N N 32.400 -32.300 12.068 8.659 0.365 0.835 H8 XYJ 38 XYJ H9 H9 H 0 1 N N N 34.104 -32.829 12.274 7.447 1.585 1.293 H9 XYJ 39 XYJ H10 H10 H 0 1 N N N 33.455 -36.942 10.659 0.578 0.754 0.666 H10 XYJ 40 XYJ H11 H11 H 0 1 N N N 33.196 -38.475 9.759 0.962 1.689 -0.799 H11 XYJ 41 XYJ H12 H12 H 0 1 N N N 35.571 -38.000 10.218 -0.278 3.632 0.114 H12 XYJ 42 XYJ H13 H13 H 0 1 N N N 35.445 -36.485 9.262 -0.663 2.697 1.580 H13 XYJ 43 XYJ H14 H14 H 0 1 N N N 36.944 -41.037 4.265 -6.533 0.315 -0.551 H14 XYJ 44 XYJ H15 H15 H 0 1 N N N 38.393 -41.496 5.223 -5.448 -0.502 -1.702 H15 XYJ 45 XYJ H16 H16 H 0 1 N N N 40.431 -40.198 5.003 -7.240 -0.828 1.451 H16 XYJ 46 XYJ H17 H17 H 0 1 N N N 39.520 -38.710 5.428 -5.534 -0.774 1.957 H17 XYJ 47 XYJ H18 H18 H 0 1 N N N 39.427 -39.052 1.447 -7.790 -4.340 -0.439 H18 XYJ 48 XYJ H19 H19 H 0 1 N N N 40.349 -40.533 1.017 -6.072 -4.292 0.029 H19 XYJ 49 XYJ H20 H20 H 0 1 N N N 34.865 -28.631 8.824 5.671 -3.754 -1.950 H20 XYJ 50 XYJ H21 H21 H 0 1 N N N 35.698 -29.519 7.503 7.300 -3.071 -2.169 H21 XYJ 51 XYJ H22 H22 H 0 1 N N N 33.992 -28.996 7.298 6.916 -4.004 -0.703 H22 XYJ 52 XYJ H23 H23 H 0 1 N N N 32.772 -34.582 10.770 5.156 2.036 1.604 H23 XYJ 53 XYJ H24 H24 H 0 1 N N N 35.923 -39.850 9.290 -2.954 3.464 0.387 H24 XYJ 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XYJ C19 O18 SING N N 1 XYJ C19 C20 SING N N 2 XYJ O18 C17 SING N N 3 XYJ C20 N15 SING N N 4 XYJ C17 C16 SING N N 5 XYJ N15 C16 SING N N 6 XYJ N15 C14 SING N N 7 XYJ C14 C13 SING N N 8 XYJ C13 S12 SING N N 9 XYJ O22 S12 DOUB N N 10 XYJ O01 C02 DOUB N N 11 XYJ O23 C10 DOUB N N 12 XYJ S12 O21 DOUB N N 13 XYJ S12 N11 SING N N 14 XYJ N24 C03 SING Y N 15 XYJ N24 C06 DOUB Y N 16 XYJ C02 C03 SING N N 17 XYJ C02 N28 SING N N 18 XYJ C29 N28 SING N N 19 XYJ C10 N11 SING N N 20 XYJ C10 C09 SING N N 21 XYJ C03 C04 DOUB Y N 22 XYJ S07 C06 SING N N 23 XYJ S07 C08 SING N N 24 XYJ N28 C27 SING N N 25 XYJ C06 N05 SING Y N 26 XYJ C09 C08 SING N N 27 XYJ C04 N05 SING Y N 28 XYJ C04 N25 SING N N 29 XYJ C27 N25 SING N N 30 XYJ C27 O30 DOUB N N 31 XYJ N25 C26 SING N N 32 XYJ C13 H1 SING N N 33 XYJ C13 H2 SING N N 34 XYJ C17 H3 SING N N 35 XYJ C17 H4 SING N N 36 XYJ C20 H5 SING N N 37 XYJ C20 H6 SING N N 38 XYJ C26 H7 SING N N 39 XYJ C26 H8 SING N N 40 XYJ C26 H9 SING N N 41 XYJ C08 H10 SING N N 42 XYJ C08 H11 SING N N 43 XYJ C09 H12 SING N N 44 XYJ C09 H13 SING N N 45 XYJ C14 H14 SING N N 46 XYJ C14 H15 SING N N 47 XYJ C16 H16 SING N N 48 XYJ C16 H17 SING N N 49 XYJ C19 H18 SING N N 50 XYJ C19 H19 SING N N 51 XYJ C29 H20 SING N N 52 XYJ C29 H21 SING N N 53 XYJ C29 H22 SING N N 54 XYJ N05 H23 SING N N 55 XYJ N11 H24 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XYJ SMILES ACDLabs 12.01 "C(NS(CCN1CCOCC1)(=O)=O)(CCSc3nc2c(C(N(C(N2C)=O)C)=O)n3)=O" XYJ InChI InChI 1.03 "InChI=1S/C16H24N6O6S2/c1-20-13-12(14(24)21(2)16(20)25)17-15(18-13)29-9-3-11(23)19-30(26,27)10-6-22-4-7-28-8-5-22/h3-10H2,1-2H3,(H,17,18)(H,19,23)" XYJ InChIKey InChI 1.03 JUFGUKJIZDHLKW-UHFFFAOYSA-N XYJ SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2[nH]c(SCCC(=O)N[S](=O)(=O)CCN3CCOCC3)nc2C1=O" XYJ SMILES CACTVS 3.385 "CN1C(=O)N(C)c2[nH]c(SCCC(=O)N[S](=O)(=O)CCN3CCOCC3)nc2C1=O" XYJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(nc([nH]2)SCCC(=O)NS(=O)(=O)CCN3CCOCC3)C(=O)N(C1=O)C" XYJ SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c(nc([nH]2)SCCC(=O)NS(=O)(=O)CCN3CCOCC3)C(=O)N(C1=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XYJ "SYSTEMATIC NAME" ACDLabs 12.01 "3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]-N-{[2-(morpholin-4-yl)ethyl]sulfonyl}propanamide" XYJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[1,3-dimethyl-2,6-bis(oxidanylidene)-9~{H}-purin-8-yl]sulfanyl]-~{N}-(2-morpholin-4-ylethylsulfonyl)propanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XYJ "Create component" 2021-01-20 RCSB XYJ "Initial release" 2021-02-17 RCSB ##