data_XYL # _chem_comp.id XYL _chem_comp.name Xylitol _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms D-Xylitol _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 152.146 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XYL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XIG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XYL _pdbx_chem_comp_synonyms.name D-Xylitol _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XYL C1 C1 C 0 1 N N N 37.063 33.623 56.120 0.691 0.183 2.498 C1 XYL 1 XYL C2 C2 C 0 1 N N S 35.719 33.984 56.718 -0.147 0.457 1.249 C2 XYL 2 XYL C3 C3 C 0 1 N N R 35.016 32.719 57.236 0.691 0.183 0.000 C3 XYL 3 XYL C4 C4 C 0 1 N N R 33.541 32.973 57.545 -0.147 0.457 -1.249 C4 XYL 4 XYL C5 C5 C 0 1 N N N 32.680 31.715 57.608 0.691 0.183 -2.498 C5 XYL 5 XYL O1 O1 O 0 1 N N N 37.649 34.732 55.851 -0.092 0.439 3.665 O1 XYL 6 XYL O2 O2 O 0 1 N N N 35.933 34.807 57.795 -1.294 -0.396 1.249 O2 XYL 7 XYL O3 O3 O 0 1 N N N 35.667 32.142 58.357 1.114 -1.181 0.000 O3 XYL 8 XYL O4 O4 O 0 1 N N N 33.323 33.709 58.737 -1.294 -0.396 -1.249 O4 XYL 9 XYL O5 O5 O 0 1 N N N 32.672 30.892 56.473 -0.092 0.439 -3.665 O5 XYL 10 XYL H11 H11 H 0 1 N N N 37.669 32.948 56.769 1.566 0.834 2.498 H11 XYL 11 XYL H12 H12 H 0 1 N N N 36.987 32.938 55.242 1.014 -0.858 2.498 H12 XYL 12 XYL H2 H2 H 0 1 N N N 35.091 34.478 55.939 -0.470 1.498 1.249 H2 XYL 13 XYL H3 H3 H 0 1 N N N 35.078 31.979 56.404 1.566 0.834 0.000 H3 XYL 14 XYL H4 H4 H 0 1 N N N 33.222 33.581 56.667 -0.470 1.498 -1.249 H4 XYL 15 XYL H51 H51 H 0 1 N N N 32.965 31.113 58.502 1.566 0.834 -2.498 H51 XYL 16 XYL H52 H52 H 0 1 N N N 31.633 31.993 57.872 1.014 -0.858 -2.498 H52 XYL 17 XYL HO1 HO1 H 0 1 N N N 38.491 34.505 55.475 0.472 0.254 4.427 HO1 XYL 18 XYL HO2 HO2 H 0 1 N N N 35.090 35.033 58.170 -0.965 -1.305 1.249 HO2 XYL 19 XYL HO3 HO3 H 0 1 N N N 35.232 31.360 58.677 0.312 -1.722 0.000 HO3 XYL 20 XYL HO4 HO4 H 0 1 N N N 32.406 33.866 58.929 -0.965 -1.305 -1.249 HO4 XYL 21 XYL HO5 HO5 H 0 1 N N N 32.135 30.108 56.512 0.472 0.254 -4.427 HO5 XYL 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XYL C1 C2 SING N N 1 XYL C1 O1 SING N N 2 XYL C1 H11 SING N N 3 XYL C1 H12 SING N N 4 XYL C2 C3 SING N N 5 XYL C2 O2 SING N N 6 XYL C2 H2 SING N N 7 XYL C3 C4 SING N N 8 XYL C3 O3 SING N N 9 XYL C3 H3 SING N N 10 XYL C4 C5 SING N N 11 XYL C4 O4 SING N N 12 XYL C4 H4 SING N N 13 XYL C5 O5 SING N N 14 XYL C5 H51 SING N N 15 XYL C5 H52 SING N N 16 XYL O1 HO1 SING N N 17 XYL O2 HO2 SING N N 18 XYL O3 HO3 SING N N 19 XYL O4 HO4 SING N N 20 XYL O5 HO5 SING N N 21 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XYL SMILES ACDLabs 10.04 "OC(CO)C(O)C(O)CO" XYL SMILES_CANONICAL CACTVS 3.341 "OC[C@H](O)[C@@H](O)[C@H](O)CO" XYL SMILES CACTVS 3.341 "OC[CH](O)[CH](O)[CH](O)CO" XYL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H](C([C@@H](CO)O)O)O)O" XYL SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(CO)O)O)O)O" XYL InChI InChI 1.03 "InChI=1S/C5H12O5/c6-1-3(8)5(10)4(9)2-7/h3-10H,1-2H2/t3-,4+,5+" XYL InChIKey InChI 1.03 HEBKCHPVOIAQTA-SCDXWVJYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XYL "SYSTEMATIC NAME" ACDLabs 10.04 D-xylitol XYL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,4R)-pentane-1,2,3,4,5-pentol" # _pdbx_chem_comp_feature.comp_id XYL _pdbx_chem_comp_feature.type "CARBOHYDRATE ISOMER" _pdbx_chem_comp_feature.value D _pdbx_chem_comp_feature.source PDB _pdbx_chem_comp_feature.support ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XYL "Create component" 1999-07-08 RCSB XYL "Modify descriptor" 2011-06-04 RCSB XYL "Other modification" 2020-07-03 RCSB XYL "Modify name" 2020-07-17 RCSB XYL "Modify synonyms" 2020-07-17 RCSB XYL "Modify linking type" 2020-07-17 RCSB ##