data_XYR # _chem_comp.id XYR _chem_comp.name "N-{(1R)-1-[(3P,5M)-3-[1-(difluoromethyl)-1H-pyrazol-4-yl]-5-(1-methyl-1H-pyrazol-4-yl)phenyl]ethyl}-5-[2-(dimethylamino)ethoxy]-2-methylbenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H32 F2 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-14 _chem_comp.pdbx_modified_date 2024-03-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 522.589 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UUU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XYR C1 C1 C 0 1 N N N N N N 47.582 32.826 1.057 -4.142 4.956 -0.113 C1 XYR 1 XYR C2 C2 C 0 1 Y N N N N N 48.705 33.758 0.683 -4.372 3.468 -0.061 C2 XYR 2 XYR C3 C3 C 0 1 Y N N N N N 49.934 33.292 0.182 -3.330 2.589 -0.361 C3 XYR 3 XYR C4 C4 C 0 1 N N N N N N 50.180 31.824 0.019 -1.998 3.116 -0.730 C4 XYR 4 XYR C6 C5 C 0 1 N N R N N N 51.161 29.779 0.956 0.357 2.792 -1.262 C6 XYR 5 XYR C9 C6 C 0 1 Y N N N N N 53.434 29.669 -0.173 1.220 0.469 -0.930 C9 XYR 6 XYR C10 C7 C 0 1 Y N N N N N 54.266 29.270 -1.214 2.202 -0.426 -0.509 C10 XYR 7 XYR C11 C8 C 0 1 Y N N N N N 55.691 29.661 -1.212 1.986 -1.888 -0.651 C11 XYR 8 XYR C12 C9 C 0 1 Y N N N N N 56.278 30.656 -0.466 2.857 -2.871 -0.283 C12 XYR 9 XYR C14 C10 C 0 1 N N N N N N 58.593 31.561 -0.312 2.875 -5.376 -0.348 C14 XYR 10 XYR N17 N1 N 0 1 Y N N N N N 57.904 29.737 -1.707 1.027 -3.805 -1.140 N17 XYR 11 XYR C20 C11 C 0 1 Y N N N N N 52.392 28.213 -2.293 3.582 1.424 0.173 C20 XYR 12 XYR C18 C12 C 0 1 Y N N N N N 56.756 29.128 -1.962 0.841 -2.512 -1.184 C18 XYR 13 XYR C19 C13 C 0 1 Y N N N N N 53.743 28.538 -2.275 3.385 0.053 0.043 C19 XYR 14 XYR C21 C14 C 0 1 Y N N N N N 51.812 27.505 -3.464 4.845 1.943 0.757 C21 XYR 15 XYR C22 C15 C 0 1 Y N N N N N 52.401 27.304 -4.692 5.886 1.194 1.219 C22 XYR 16 XYR C24 C16 C 0 1 N N N N N N 51.676 26.235 -6.848 8.124 1.663 2.245 C24 XYR 17 XYR C26 C17 C 0 1 Y N N N N N 50.538 26.921 -3.600 5.187 3.299 0.928 C26 XYR 18 XYR C27 C18 C 0 1 Y N N N N N 51.571 28.619 -1.243 2.598 2.311 -0.261 C27 XYR 19 XYR C29 C19 C 0 1 Y N N N N N 50.931 34.202 -0.185 -3.549 1.212 -0.312 C29 XYR 20 XYR C30 C20 C 0 1 Y N N N N N 50.712 35.566 -0.056 -4.799 0.726 0.034 C30 XYR 21 XYR C32 C21 C 0 1 N N N N N N 52.922 35.993 -0.872 -6.329 -1.045 0.448 C32 XYR 22 XYR C33 C22 C 0 1 N N N N N N 53.940 36.870 -0.274 -6.382 -2.574 0.449 C33 XYR 23 XYR C35 C23 C 0 1 N N N N N N 54.509 38.142 -2.296 -5.990 -2.727 2.833 C35 XYR 24 XYR C36 C24 C 0 1 N N N N N N 54.781 39.182 -0.097 -5.336 -4.550 1.380 C36 XYR 25 XYR C37 C25 C 0 1 Y N N N N N 49.509 36.034 0.436 -5.829 1.608 0.331 C37 XYR 26 XYR C38 C26 C 0 1 Y N N N N N 48.526 35.134 0.798 -5.612 2.973 0.288 C38 XYR 27 XYR C7 C27 C 0 1 N N N N N N 51.689 29.362 2.324 0.438 2.958 -2.781 C7 XYR 28 XYR C8 C28 C 0 1 Y N N N N N 52.081 29.351 -0.174 1.422 1.829 -0.804 C8 XYR 29 XYR F15 F1 F 0 1 N N N N N N 58.855 32.492 -1.252 2.404 -6.272 -1.314 F15 XYR 30 XYR F16 F2 F 0 1 N N N N N N 59.748 30.885 -0.145 4.268 -5.286 -0.435 F16 XYR 31 XYR N13 N2 N 0 1 Y N N N N N 57.584 30.676 -0.783 2.285 -4.055 -0.579 N13 XYR 32 XYR N23 N3 N 0 1 Y N N N N N 51.512 26.651 -5.463 6.834 2.043 1.664 N23 XYR 33 XYR N25 N4 N 0 1 Y N N N N N 50.361 26.407 -4.808 6.374 3.351 1.472 N25 XYR 34 XYR N34 N5 N 0 1 N N N N N N 53.985 38.220 -0.907 -5.497 -3.094 1.499 N34 XYR 35 XYR N5 N6 N 0 1 N N N N N N 50.921 31.225 0.962 -0.962 2.271 -0.897 N5 XYR 36 XYR O28 O1 O 0 1 N N N N N N 49.707 31.207 -0.931 -1.839 4.311 -0.882 O28 XYR 37 XYR O31 O2 O 0 1 N N N N N N 51.663 36.488 -0.406 -5.016 -0.614 0.083 O31 XYR 38 XYR H1B H1 H 0 1 N N N N N N 47.670 32.552 2.119 -4.245 5.304 -1.141 H1B XYR 39 XYR H1A H2 H 0 1 N N N N N N 46.618 33.327 0.887 -4.876 5.460 0.516 H1A XYR 40 XYR H1C H3 H 0 1 N N N N N N 47.638 31.918 0.438 -3.138 5.181 0.248 H1C XYR 41 XYR H6 H4 H 0 1 N N N N N N 50.196 29.272 0.807 0.511 3.759 -0.782 H6 XYR 42 XYR H9 H5 H 0 1 N N N N N N 53.846 30.235 0.649 0.301 0.098 -1.360 H9 XYR 43 XYR H12 H6 H 0 1 N N N N N N 55.782 31.302 0.243 3.830 -2.727 0.164 H12 XYR 44 XYR H14 H7 H 0 1 N N N N N N 58.270 32.030 0.629 2.595 -5.731 0.643 H14 XYR 45 XYR H18 H8 H 0 1 N N N N N N 56.649 28.315 -2.665 -0.035 -2.010 -1.565 H18 XYR 46 XYR H19 H9 H 0 1 N N N N N N 54.386 28.223 -3.084 4.149 -0.637 0.371 H19 XYR 47 XYR H22 H10 H 0 1 N N N N N N 53.394 27.613 -4.983 5.942 0.115 1.227 H22 XYR 48 XYR H24C H11 H 0 0 N N N N N N 50.758 25.737 -7.193 8.870 1.584 1.454 H24C XYR 49 XYR H24B H12 H 0 0 N N N N N N 51.873 27.117 -7.475 8.436 2.420 2.964 H24B XYR 50 XYR H24A H13 H 0 0 N N N N N N 52.522 25.536 -6.923 8.026 0.701 2.749 H24A XYR 51 XYR H26 H14 H 0 1 N N N N N N 49.796 26.895 -2.816 4.576 4.146 0.657 H26 XYR 52 XYR H27 H15 H 0 1 N N N N N N 50.522 28.362 -1.259 2.754 3.375 -0.172 H27 XYR 53 XYR H29 H16 H 0 1 N N N N N N 51.874 33.842 -0.570 -2.747 0.527 -0.543 H29 XYR 54 XYR H32B H17 H 0 0 N N N N N N 53.071 34.954 -0.544 -7.052 -0.657 -0.270 H32B XYR 55 XYR H32A H18 H 0 0 N N N N N N 52.971 36.042 -1.970 -6.571 -0.673 1.444 H32A XYR 56 XYR H33B H19 H 0 0 N N N N N N 53.715 36.991 0.796 -7.404 -2.902 0.640 H33B XYR 57 XYR H33A H20 H 0 0 N N N N N N 54.925 36.395 -0.390 -6.055 -2.950 -0.521 H33A XYR 58 XYR H35A H21 H 0 0 N N N N N N 54.531 39.149 -2.737 -6.987 -3.142 2.979 H35A XYR 59 XYR H35C H22 H 0 0 N N N N N N 55.527 37.726 -2.281 -5.316 -3.124 3.592 H35C XYR 60 XYR H35B H23 H 0 0 N N N N N N 53.857 37.492 -2.898 -6.033 -1.641 2.918 H35B XYR 61 XYR H36A H24 H 0 0 N N N N N N 54.790 40.162 -0.596 -4.904 -4.789 0.408 H36A XYR 62 XYR H36B H25 H 0 0 N N N N N N 54.329 39.283 0.901 -4.676 -4.908 2.170 H36B XYR 63 XYR H36C H26 H 0 0 N N N N N N 55.812 38.812 0.003 -6.309 -5.031 1.473 H36C XYR 64 XYR H37 H27 H 0 1 N N N N N N 49.338 37.096 0.537 -6.803 1.227 0.601 H37 XYR 65 XYR H38 H28 H 0 1 N N N N N N 47.589 35.509 1.182 -6.418 3.654 0.520 H38 XYR 66 XYR H7C H29 H 0 1 N N N N N N 51.873 28.278 2.332 0.284 1.991 -3.260 H7C XYR 67 XYR H7B H30 H 0 1 N N N N N N 52.629 29.895 2.532 -0.333 3.655 -3.112 H7B XYR 68 XYR H7A H31 H 0 1 N N N N N N 50.946 29.613 3.096 1.419 3.346 -3.052 H7A XYR 69 XYR H5 H33 H 0 1 N N N N N N 51.322 31.781 1.691 -1.090 1.317 -0.775 H5 XYR 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XYR C1 C2 SING N N 1 XYR C2 C3 DOUB Y N 2 XYR C3 C4 SING N N 3 XYR C4 N5 SING N N 4 XYR N5 C6 SING N N 5 XYR C6 C7 SING N N 6 XYR C6 C8 SING N N 7 XYR C8 C9 DOUB Y N 8 XYR C9 C10 SING Y N 9 XYR C10 C11 SING N N 10 XYR C11 C12 DOUB Y N 11 XYR C12 N13 SING Y N 12 XYR N13 C14 SING N N 13 XYR C14 F15 SING N N 14 XYR C14 F16 SING N N 15 XYR N13 N17 SING Y N 16 XYR N17 C18 DOUB Y N 17 XYR C10 C19 DOUB Y N 18 XYR C19 C20 SING Y N 19 XYR C20 C21 SING N N 20 XYR C21 C22 DOUB Y N 21 XYR C22 N23 SING Y N 22 XYR N23 C24 SING N N 23 XYR N23 N25 SING Y N 24 XYR N25 C26 DOUB Y N 25 XYR C20 C27 DOUB Y N 26 XYR C4 O28 DOUB N N 27 XYR C3 C29 SING Y N 28 XYR C29 C30 DOUB Y N 29 XYR C30 O31 SING N N 30 XYR O31 C32 SING N N 31 XYR C32 C33 SING N N 32 XYR C33 N34 SING N N 33 XYR N34 C35 SING N N 34 XYR N34 C36 SING N N 35 XYR C30 C37 SING Y N 36 XYR C37 C38 DOUB Y N 37 XYR C38 C2 SING Y N 38 XYR C27 C8 SING Y N 39 XYR C18 C11 SING Y N 40 XYR C26 C21 SING Y N 41 XYR C1 H1B SING N N 42 XYR C1 H1A SING N N 43 XYR C1 H1C SING N N 44 XYR C6 H6 SING N N 45 XYR C9 H9 SING N N 46 XYR C12 H12 SING N N 47 XYR C14 H14 SING N N 48 XYR C18 H18 SING N N 49 XYR C19 H19 SING N N 50 XYR C22 H22 SING N N 51 XYR C24 H24C SING N N 52 XYR C24 H24B SING N N 53 XYR C24 H24A SING N N 54 XYR C26 H26 SING N N 55 XYR C27 H27 SING N N 56 XYR C29 H29 SING N N 57 XYR C32 H32B SING N N 58 XYR C32 H32A SING N N 59 XYR C33 H33B SING N N 60 XYR C33 H33A SING N N 61 XYR C35 H35A SING N N 62 XYR C35 H35C SING N N 63 XYR C35 H35B SING N N 64 XYR C36 H36A SING N N 65 XYR C36 H36B SING N N 66 XYR C36 H36C SING N N 67 XYR C37 H37 SING N N 68 XYR C38 H38 SING N N 69 XYR C7 H7C SING N N 70 XYR C7 H7B SING N N 71 XYR C7 H7A SING N N 72 XYR N5 H5 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XYR SMILES ACDLabs 12.01 "FC(F)n1cc(cn1)c1cc(cc(c1)c1cn(C)nc1)C(C)NC(=O)c1cc(OCCN(C)C)ccc1C" XYR InChI InChI 1.06 "InChI=1S/C28H32F2N6O2/c1-18-6-7-25(38-9-8-34(3)4)13-26(18)27(37)33-19(2)20-10-21(23-14-31-35(5)16-23)12-22(11-20)24-15-32-36(17-24)28(29)30/h6-7,10-17,19,28H,8-9H2,1-5H3,(H,33,37)" XYR InChIKey InChI 1.06 RPSOBHALDUJHHY-UHFFFAOYSA-N XYR SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)c1cc(OCCN(C)C)ccc1C)c2cc(cc(c2)c3cnn(c3)C(F)F)c4cnn(C)c4" XYR SMILES CACTVS 3.385 "C[CH](NC(=O)c1cc(OCCN(C)C)ccc1C)c2cc(cc(c2)c3cnn(c3)C(F)F)c4cnn(C)c4" XYR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)N[C@H](C)c2cc(cc(c2)c3cnn(c3)C(F)F)c4cnn(c4)C)OCCN(C)C" XYR SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC(C)c2cc(cc(c2)c3cnn(c3)C(F)F)c4cnn(c4)C)OCCN(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XYR "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(1R)-1-[(3P,5M)-3-[1-(difluoromethyl)-1H-pyrazol-4-yl]-5-(1-methyl-1H-pyrazol-4-yl)phenyl]ethyl}-5-[2-(dimethylamino)ethoxy]-2-methylbenzamide" XYR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{R})-1-[3-[1-[bis(fluoranyl)methyl]pyrazol-4-yl]-5-(1-methylpyrazol-4-yl)phenyl]ethyl]-5-[2-(dimethylamino)ethoxy]-2-methyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XYR "Create component" 2023-11-14 RCSB XYR "Initial release" 2024-04-03 RCSB #