data_XYV # _chem_comp.id XYV _chem_comp.name prostratin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H30 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "12-deoxyphorbol-13-acetate; (1aR,1bS,4aR,7aS,7bR,8R,9aS)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-20 _chem_comp.pdbx_modified_date 2022-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.470 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XYV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LCB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XYV C10 C1 C 0 1 N N R -3.871 0.728 1.010 -0.240 -0.340 0.666 C10 XYV 1 XYV C13 C2 C 0 1 N N N -2.343 -2.813 1.011 -3.424 -2.081 0.239 C13 XYV 2 XYV C17 C3 C 0 1 N N N -3.648 -1.178 3.965 -2.800 1.421 -0.596 C17 XYV 3 XYV C20 C4 C 0 1 N N N -3.143 0.607 5.797 -2.489 3.546 0.796 C20 XYV 4 XYV C26 C5 C 0 1 N N N -4.509 4.810 -0.300 4.727 -0.570 0.502 C26 XYV 5 XYV C28 C6 C 0 1 N N N -4.504 6.311 -0.669 6.080 -0.259 1.087 C28 XYV 6 XYV C01 C7 C 0 1 N N N -4.048 0.210 -1.522 0.400 -2.724 1.206 C01 XYV 7 XYV C02 C8 C 0 1 N N R -4.819 0.440 -0.196 0.547 -1.549 0.212 C02 XYV 8 XYV C03 C9 C 0 1 N N N -5.888 1.606 -0.419 2.059 -1.338 0.163 C03 XYV 9 XYV C04 C10 C 0 1 N N S -5.660 2.868 0.398 2.533 0.035 -0.225 C04 XYV 10 XYV C05 C11 C 0 1 N N R -5.461 2.614 1.903 1.533 1.168 -0.362 C05 XYV 11 XYV C06 C12 C 0 1 N N N -6.882 2.762 1.362 2.255 0.617 -1.606 C06 XYV 12 XYV C07 C13 C 0 1 N N N -7.580 4.092 1.755 3.354 1.501 -2.213 C07 XYV 13 XYV C08 C14 C 0 1 N N N -7.738 1.471 1.432 1.501 -0.248 -2.608 C08 XYV 14 XYV C09 C15 C 0 1 N N S -4.722 1.289 2.200 0.041 0.876 -0.236 C09 XYV 15 XYV C11 C16 C 0 1 N N S -3.029 -0.535 1.619 -1.748 -0.520 0.714 C11 XYV 16 XYV C12 C17 C 0 1 N N N -2.278 -1.384 0.567 -2.278 -1.917 0.907 C12 XYV 17 XYV C14 C18 C 0 1 N N N -3.297 -2.928 2.190 -3.793 -0.860 -0.475 C14 XYV 18 XYV C16 C19 C 0 1 N N R -3.861 -1.533 2.518 -2.508 -0.038 -0.516 C16 XYV 19 XYV C18 C20 C 0 1 N N N -3.655 0.276 4.381 -1.900 2.309 0.178 C18 XYV 20 XYV C19 C21 C 0 1 N N N -3.890 1.458 3.486 -0.646 2.080 0.347 C19 XYV 21 XYV C23 C22 C 0 1 N N N -1.828 -4.022 0.205 -4.222 -3.360 0.231 C23 XYV 22 XYV O15 O1 O 0 1 N N N -3.577 -3.957 2.728 -4.867 -0.554 -0.942 O15 XYV 23 XYV O21 O2 O 0 1 N N N -1.818 0.126 5.870 -1.467 4.262 1.493 O21 XYV 24 XYV O22 O3 O 0 1 N N N -5.245 -1.604 2.220 -1.841 -0.468 -1.707 O22 XYV 25 XYV O24 O4 O 0 1 N N N -2.892 1.661 0.616 0.184 0.014 1.990 O24 XYV 26 XYV O25 O5 O 0 1 N N N -5.751 4.161 -0.170 3.822 0.409 0.347 O25 XYV 27 XYV O27 O6 O 0 1 N N N -3.483 4.232 -0.128 4.456 -1.701 0.172 O27 XYV 28 XYV H2 H2 H 0 1 N N N -4.442 -1.679 4.538 -2.766 1.723 -1.642 H2 XYV 29 XYV H3 H3 H 0 1 N N N -3.162 1.694 5.963 -2.907 4.179 0.014 H3 XYV 30 XYV H4 H4 H 0 1 N N N -3.769 0.110 6.553 -3.276 3.263 1.495 H4 XYV 31 XYV H5 H5 H 0 1 N N N -3.466 6.671 -0.727 6.042 -0.372 2.170 H5 XYV 32 XYV H6 H6 H 0 1 N N N -4.996 6.451 -1.643 6.820 -0.946 0.676 H6 XYV 33 XYV H7 H7 H 0 1 N N N -5.047 6.879 0.101 6.357 0.765 0.837 H7 XYV 34 XYV H8 H8 H 0 1 N N N -3.308 -0.592 -1.382 -0.550 -3.229 1.033 H8 XYV 35 XYV H9 H9 H 0 1 N N N -4.756 -0.079 -2.312 1.218 -3.429 1.058 H9 XYV 36 XYV H10 H10 H 0 1 N N N -3.533 1.138 -1.812 0.429 -2.343 2.226 H10 XYV 37 XYV H11 H11 H 0 1 N N N -5.380 -0.479 0.031 0.192 -1.888 -0.764 H11 XYV 38 XYV H12 H12 H 0 1 N N N -5.870 1.883 -1.483 2.461 -1.575 1.162 H12 XYV 39 XYV H13 H13 H 0 1 N N N -6.881 1.210 -0.160 2.490 -2.079 -0.523 H13 XYV 40 XYV H14 H14 H 0 1 N N N -5.090 3.481 2.469 1.839 2.157 -0.012 H14 XYV 41 XYV H15 H15 H 0 1 N N N -8.420 3.880 2.433 3.801 0.992 -3.067 H15 XYV 42 XYV H16 H16 H 0 1 N N N -6.858 4.750 2.261 2.921 2.446 -2.540 H16 XYV 43 XYV H17 H17 H 0 1 N N N -7.957 4.590 0.849 4.122 1.693 -1.463 H17 XYV 44 XYV H18 H18 H 0 1 N N N -8.544 1.604 2.169 1.130 -1.143 -2.108 H18 XYV 45 XYV H19 H19 H 0 1 N N N -8.175 1.267 0.443 0.661 0.315 -3.014 H19 XYV 46 XYV H20 H20 H 0 1 N N N -7.102 0.625 1.733 2.172 -0.535 -3.418 H20 XYV 47 XYV H21 H21 H 0 1 N N N -5.494 0.536 2.416 -0.359 0.726 -1.214 H21 XYV 48 XYV H22 H22 H 0 1 N N N -2.263 -0.095 2.274 -2.101 0.078 1.569 H22 XYV 49 XYV H23 H23 H 0 1 N N N -1.795 -1.014 -0.325 -1.910 -2.681 1.571 H23 XYV 50 XYV H25 H25 H 0 1 N N N -3.478 2.423 3.742 -0.054 2.767 0.920 H25 XYV 51 XYV H27 H27 H 0 1 N N N -2.006 -4.946 0.775 -5.110 -3.230 -0.387 H27 XYV 52 XYV H28 H28 H 0 1 N N N -2.360 -4.075 -0.756 -3.612 -4.167 -0.175 H28 XYV 53 XYV H29 H29 H 0 1 N N N -0.750 -3.907 0.021 -4.522 -3.608 1.249 H29 XYV 54 XYV H30 H30 H 0 1 N N N -1.461 0.310 6.731 -1.776 5.074 1.918 H30 XYV 55 XYV H31 H31 H 0 1 N N N -5.522 -2.513 2.215 -2.278 -0.191 -2.524 H31 XYV 56 XYV H32 H32 H 0 1 N N N -3.309 2.487 0.401 -0.024 -0.650 2.661 H32 XYV 57 XYV H1 H1 H 0 1 N N N -2.670 -1.590 4.255 -3.819 1.581 -0.235 H1 XYV 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XYV C01 C02 SING N N 1 XYV C28 C26 SING N N 2 XYV C03 C02 SING N N 3 XYV C03 C04 SING N N 4 XYV C26 O25 SING N N 5 XYV C26 O27 DOUB N N 6 XYV C02 C10 SING N N 7 XYV O25 C04 SING N N 8 XYV C23 C13 SING N N 9 XYV C04 C06 SING N N 10 XYV C04 C05 SING N N 11 XYV C12 C13 DOUB N N 12 XYV C12 C11 SING N N 13 XYV O24 C10 SING N N 14 XYV C10 C11 SING N N 15 XYV C10 C09 SING N N 16 XYV C13 C14 SING N N 17 XYV C06 C08 SING N N 18 XYV C06 C07 SING N N 19 XYV C06 C05 SING N N 20 XYV C11 C16 SING N N 21 XYV C05 C09 SING N N 22 XYV C14 C16 SING N N 23 XYV C14 O15 DOUB N N 24 XYV C09 C19 SING N N 25 XYV O22 C16 SING N N 26 XYV C16 C17 SING N N 27 XYV C19 C18 DOUB N N 28 XYV C17 C18 SING N N 29 XYV C18 C20 SING N N 30 XYV C20 O21 SING N N 31 XYV C17 H2 SING N N 32 XYV C20 H3 SING N N 33 XYV C20 H4 SING N N 34 XYV C28 H5 SING N N 35 XYV C28 H6 SING N N 36 XYV C28 H7 SING N N 37 XYV C01 H8 SING N N 38 XYV C01 H9 SING N N 39 XYV C01 H10 SING N N 40 XYV C02 H11 SING N N 41 XYV C03 H12 SING N N 42 XYV C03 H13 SING N N 43 XYV C05 H14 SING N N 44 XYV C07 H15 SING N N 45 XYV C07 H16 SING N N 46 XYV C07 H17 SING N N 47 XYV C08 H18 SING N N 48 XYV C08 H19 SING N N 49 XYV C08 H20 SING N N 50 XYV C09 H21 SING N N 51 XYV C11 H22 SING N N 52 XYV C12 H23 SING N N 53 XYV C19 H25 SING N N 54 XYV C23 H27 SING N N 55 XYV C23 H28 SING N N 56 XYV C23 H29 SING N N 57 XYV O21 H30 SING N N 58 XYV O22 H31 SING N N 59 XYV O24 H32 SING N N 60 XYV C17 H1 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XYV SMILES ACDLabs 12.01 "C12(C4C(CC(CO)=CC1C3C(CC2C)(C3(C)C)OC(=O)C)(C(C(=C4)C)=O)O)O" XYV InChI InChI 1.03 "InChI=1S/C22H30O6/c1-11-6-16-20(26,18(11)25)9-14(10-23)7-15-17-19(4,5)21(17,28-13(3)24)8-12(2)22(15,16)27/h6-7,12,15-17,23,26-27H,8-10H2,1-5H3/t12-,15+,16-,17-,20-,21+,22-/m1/s1" XYV InChIKey InChI 1.03 BOJKFRKNLSCGHY-HXGSDTCMSA-N XYV SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1C[C@]2(OC(C)=O)[C@H]([C@@H]3C=C(CO)C[C@@]4(O)[C@@H](C=C(C)C4=O)[C@@]13O)C2(C)C" XYV SMILES CACTVS 3.385 "C[CH]1C[C]2(OC(C)=O)[CH]([CH]3C=C(CO)C[C]4(O)[CH](C=C(C)C4=O)[C]13O)C2(C)C" XYV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1C[C@@]2([C@@H](C2(C)C)[C@H]3[C@]1([C@@H]4C=C(C(=O)[C@]4(CC(=C3)CO)O)C)O)OC(=O)C" XYV SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC2(C(C2(C)C)C3C1(C4C=C(C(=O)C4(CC(=C3)CO)O)C)O)OC(=O)C" # _pdbx_chem_comp_identifier.comp_id XYV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1aR,1bS,4aR,7aS,7bR,8R,9aS)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 XYV 12-deoxyphorbol-13-acetate PDB ? 2 XYV "(1aR,1bS,4aR,7aS,7bR,8R,9aS)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate" PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XYV "Create component" 2021-01-20 RCSB XYV "Modify synonyms" 2021-03-13 RCSB XYV "Initial release" 2022-05-04 RCSB ##