data_XZ6 # _chem_comp.id XZ6 _chem_comp.name "7-(hydroxymethyl)-3-methyl-6~{H}-[1,3]thiazolo[3,2-a]pyrimidin-5-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H9 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 197.234 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XZ6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7GS4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XZ6 N1 N1 N 0 1 N N N N N N -18.896 -3.435 -25.186 ? ? ? N1 XZ6 1 XZ6 C4 C1 C 0 1 N N N N N N -20.180 -3.779 -25.134 ? ? ? C4 XZ6 2 XZ6 C5 C2 C 0 1 N N N N N N -21.260 -2.719 -24.934 ? ? ? C5 XZ6 3 XZ6 C6 C3 C 0 1 N N N N N N -20.516 -5.132 -25.262 ? ? ? C6 XZ6 4 XZ6 C7 C4 C 0 1 N N N N N N -19.519 -6.083 -25.442 ? ? ? C7 XZ6 5 XZ6 N N2 N 0 1 Y N N N N N -18.217 -5.663 -25.488 ? ? ? N XZ6 6 XZ6 C C5 C 0 1 N N N N N N -17.032 -7.978 -25.836 ? ? ? C XZ6 7 XZ6 O O1 O 0 1 N N N N N N -21.327 -2.420 -23.567 ? ? ? O XZ6 8 XZ6 C1 C6 C 0 1 Y N N N N N -17.055 -6.459 -25.662 ? ? ? C1 XZ6 9 XZ6 C2 C7 C 0 1 Y N N N N N -15.845 -5.754 -25.668 ? ? ? C2 XZ6 10 XZ6 C3 C8 C 0 1 Y N N N N N -17.958 -4.371 -25.360 ? ? ? C3 XZ6 11 XZ6 O1 O2 O 0 1 N N N N N N -19.909 -7.423 -25.566 ? ? ? O1 XZ6 12 XZ6 S S1 S 0 1 Y N N N N N -16.260 -4.124 -25.455 ? ? ? S XZ6 13 XZ6 H1 H1 H 0 1 N N N N N N -21.003 -1.813 -25.502 ? ? ? H1 XZ6 14 XZ6 H2 H2 H 0 1 N N N N N N -22.230 -3.105 -25.279 ? ? ? H2 XZ6 15 XZ6 H3 H3 H 0 1 N N N N N N -21.190 -5.211 -26.128 ? ? ? H3 XZ6 16 XZ6 H4 H4 H 0 1 N N N N N N -21.060 -5.412 -24.348 ? ? ? H4 XZ6 17 XZ6 H5 H5 H 0 1 N N N N N N -18.061 -8.367 -25.807 ? ? ? H5 XZ6 18 XZ6 H6 H6 H 0 1 N N N N N N -16.572 -8.229 -26.803 ? ? ? H6 XZ6 19 XZ6 H7 H7 H 0 1 N N N N N N -16.446 -8.431 -25.023 ? ? ? H7 XZ6 20 XZ6 H8 H8 H 0 1 N N N N N N -21.995 -1.761 -23.419 ? ? ? H8 XZ6 21 XZ6 H9 H9 H 0 1 N N N N N N -14.853 -6.164 -25.784 ? ? ? H9 XZ6 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XZ6 C C1 SING N N 1 XZ6 C2 C1 DOUB Y N 2 XZ6 C2 S SING Y N 3 XZ6 C1 N SING Y N 4 XZ6 O1 C7 DOUB N N 5 XZ6 N C7 SING N N 6 XZ6 N C3 DOUB Y N 7 XZ6 S C3 SING Y N 8 XZ6 C7 C6 SING N N 9 XZ6 C3 N1 SING N N 10 XZ6 C6 C4 SING N N 11 XZ6 N1 C4 DOUB N N 12 XZ6 C4 C5 SING N N 13 XZ6 C5 O SING N N 14 XZ6 C5 H1 SING N N 15 XZ6 C5 H2 SING N N 16 XZ6 C6 H3 SING N N 17 XZ6 C6 H4 SING N N 18 XZ6 C H5 SING N N 19 XZ6 C H6 SING N N 20 XZ6 C H7 SING N N 21 XZ6 O H8 SING N N 22 XZ6 C2 H9 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XZ6 InChI InChI 1.06 "InChI=1S/C8H9N2O2S/c1-5-4-13-8-9-6(3-11)2-7(12)10(5)8/h4,11H,2-3H2,1H3" XZ6 InChIKey InChI 1.06 SALJLBCFMZAZLL-UHFFFAOYSA-N XZ6 SMILES_CANONICAL CACTVS 3.385 "Cc1csc2N=C(CO)CC(=O)[n]12" XZ6 SMILES CACTVS 3.385 "Cc1csc2N=C(CO)CC(=O)[n]12" XZ6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CSC2=[N]1C(=O)CC(=N2)CO" XZ6 SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CSC2=[N]1C(=O)CC(=N2)CO" # _pdbx_chem_comp_identifier.comp_id XZ6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-(hydroxymethyl)-3-methyl-6~{H}-[1,3]thiazolo[3,2-a]pyrimidin-5-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XZ6 "Create component" 2023-11-14 RCSB XZ6 "Initial release" 2024-02-14 RCSB XZ6 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XZ6 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C5 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #