data_Y08 # _chem_comp.id Y08 _chem_comp.name "(E,2R,3R,4S,5R)-N-[[(3S)-1-cyclopropylcarbonylpiperidin-3-yl]methyl]-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H38 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-11-15 _chem_comp.pdbx_modified_date 2012-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.547 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y08 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3PKC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y08 N1 N1 N 0 1 N N N -25.083 -3.844 -11.384 -1.064 -1.462 0.051 N1 Y08 1 Y08 O1 O1 O 0 1 N N N -25.778 1.846 -15.346 3.239 1.428 0.848 O1 Y08 2 Y08 N2 N2 N 0 1 N N N -28.382 -4.790 -7.824 -5.530 0.459 0.536 N2 Y08 3 Y08 O2 O2 O 0 1 N N N -26.552 -1.717 -13.551 1.210 0.175 0.312 O2 Y08 4 Y08 O3 O3 O 0 1 N N N -25.131 -0.710 -15.429 3.457 -0.525 -1.249 O3 Y08 5 Y08 O4 O4 O 0 1 N N N -23.918 -2.192 -10.476 -0.406 -3.490 0.664 O4 Y08 6 Y08 O5 O5 O 0 1 N N N -29.444 -6.651 -8.406 -7.020 -0.505 -0.795 O5 Y08 7 Y08 O6 O6 O 0 1 N N N -22.996 -1.371 -12.972 2.057 -3.353 -0.185 O6 Y08 8 Y08 C01 C01 C 0 1 N N N -26.073 2.902 -10.602 7.187 1.952 -0.325 C01 Y08 9 Y08 C02 C02 C 0 1 N N N -26.327 2.116 -11.864 5.780 1.696 0.151 C02 Y08 10 Y08 C03 C03 C 0 1 N N N -25.518 2.073 -12.923 5.417 0.488 0.502 C03 Y08 11 Y08 C04 C04 C 0 1 N N R -25.944 1.172 -14.033 4.010 0.232 0.979 C04 Y08 12 Y08 C05 C05 C 0 1 N N S -25.007 -0.046 -14.104 3.379 -0.876 0.134 C05 Y08 13 Y08 C06 C06 C 0 1 N N R -25.313 -1.054 -13.011 1.913 -1.050 0.534 C06 Y08 14 Y08 C07 C07 C 0 1 N N R -24.234 -2.101 -12.833 1.282 -2.159 -0.311 C07 Y08 15 Y08 C08 C08 C 0 1 N N N -26.107 1.904 -9.451 7.150 2.502 -1.752 C08 Y08 16 Y08 C09 C09 C 0 1 N N N -24.753 3.640 -10.657 7.861 2.970 0.597 C09 Y08 17 Y08 C10 C10 C 0 1 N N N -27.170 3.989 -10.435 7.979 0.643 -0.303 C10 Y08 18 Y08 C11 C11 C 0 1 N N N -24.386 -2.726 -11.477 -0.123 -2.419 0.170 C11 Y08 19 Y08 C12 C12 C 0 1 N N N -25.374 -4.524 -10.079 -2.429 -1.715 0.519 C12 Y08 20 Y08 C13 C13 C 0 1 N N S -26.765 -4.197 -9.572 -3.289 -0.473 0.275 C13 Y08 21 Y08 C14 C14 C 0 1 N N N -26.610 -2.752 -9.020 -2.775 0.682 1.136 C14 Y08 22 Y08 C15 C15 C 0 1 N N N -27.838 -2.362 -8.156 -3.614 1.933 0.869 C15 Y08 23 Y08 C16 C16 C 0 1 N N N -28.271 -3.480 -7.140 -5.072 1.657 1.252 C16 Y08 24 Y08 C17 C17 C 0 1 N N N -27.106 -5.221 -8.436 -4.743 -0.777 0.651 C17 Y08 25 Y08 C18 C18 C 0 1 N N N -29.522 -5.549 -7.838 -6.653 0.491 -0.208 C18 Y08 26 Y08 C19 C19 C 0 1 N N N -30.742 -5.150 -6.953 -7.452 1.764 -0.312 C19 Y08 27 Y08 C20 C20 C 0 1 N N N -32.143 -5.708 -7.448 -8.716 1.737 -1.173 C20 Y08 28 Y08 C21 C21 C 0 1 N N N -31.907 -4.219 -7.185 -7.470 2.478 -1.665 C21 Y08 29 Y08 C22 C22 C 0 1 N N N -21.845 -2.293 -13.061 2.530 -3.873 -1.429 C22 Y08 30 Y08 HN1 HN1 H 0 1 N N N -25.434 -4.257 -12.224 -0.836 -0.604 -0.340 HN1 Y08 31 Y08 HO1 HO1 H 0 1 N N N -26.053 1.259 -16.041 3.177 1.760 -0.058 HO1 Y08 32 Y08 HO2 HO2 H 0 1 N N N -26.847 -2.383 -12.941 1.222 0.474 -0.607 HO2 Y08 33 Y08 HO3 HO3 H 0 1 N N N -24.549 -1.460 -15.463 3.002 0.299 -1.472 HO3 Y08 34 Y08 H02 H02 H 0 1 N N N -27.240 1.540 -11.914 5.072 2.510 0.203 H02 Y08 35 Y08 H03 H03 H 0 1 N N N -24.610 2.655 -12.974 6.126 -0.326 0.450 H03 Y08 36 Y08 H04 H04 H 0 1 N N N -26.984 0.842 -13.891 4.031 -0.075 2.024 H04 Y08 37 Y08 H05 H05 H 0 1 N N N -23.973 0.306 -13.976 3.915 -1.811 0.302 H05 Y08 38 Y08 H06 H06 H 0 1 N N N -25.523 -0.544 -12.059 1.853 -1.318 1.589 H06 Y08 39 Y08 H07 H07 H 0 1 N N N -24.326 -2.869 -13.615 1.257 -1.851 -1.356 H07 Y08 40 Y08 H08 H08 H 0 1 N N N -25.926 2.431 -8.503 6.670 1.776 -2.409 H08 Y08 41 Y08 H08A H08A H 0 0 N N N -27.093 1.417 -9.417 6.586 3.434 -1.768 H08A Y08 42 Y08 H08B H08B H 0 0 N N N -25.327 1.143 -9.602 8.168 2.687 -2.097 H08B Y08 43 Y08 H09 H09 H 0 1 N N N -24.606 4.199 -9.721 8.878 3.155 0.252 H09 Y08 44 Y08 H09A H09A H 0 0 N N N -23.934 2.917 -10.785 7.297 3.903 0.581 H09A Y08 45 Y08 H09B H09B H 0 0 N N N -24.760 4.340 -11.505 7.887 2.579 1.613 H09B Y08 46 Y08 H10 H10 H 0 1 N N N -26.983 4.561 -9.514 8.996 0.827 -0.648 H10 Y08 47 Y08 H10A H10A H 0 0 N N N -27.147 4.669 -11.300 8.005 0.251 0.713 H10A Y08 48 Y08 H10B H10B H 0 0 N N N -28.157 3.507 -10.373 7.499 -0.083 -0.960 H10B Y08 49 Y08 H12 H12 H 0 1 N N N -25.292 -5.612 -10.218 -2.849 -2.560 -0.026 H12 Y08 50 Y08 H12A H12A H 0 0 N N N -24.636 -4.194 -9.333 -2.412 -1.941 1.585 H12A Y08 51 Y08 H13 H13 H 0 1 N N N -27.513 -4.237 -10.378 -3.236 -0.195 -0.777 H13 Y08 52 Y08 H14 H14 H 0 1 N N N -25.701 -2.697 -8.402 -2.851 0.412 2.190 H14 Y08 53 Y08 H14A H14A H 0 0 N N N -26.524 -2.051 -9.863 -1.733 0.884 0.888 H14A Y08 54 Y08 H15 H15 H 0 1 N N N -27.590 -1.453 -7.588 -3.232 2.762 1.465 H15 Y08 55 Y08 H15A H15A H 0 0 N N N -28.684 -2.155 -8.827 -3.559 2.190 -0.189 H15A Y08 56 Y08 H16 H16 H 0 1 N N N -29.246 -3.215 -6.705 -5.691 2.509 0.972 H16 Y08 57 Y08 H16A H16A H 0 0 N N N -27.520 -3.552 -6.340 -5.141 1.490 2.327 H16A Y08 58 Y08 H17 H17 H 0 1 N N N -26.308 -5.224 -7.679 -4.786 -1.143 1.677 H17 Y08 59 Y08 H17A H17A H 0 0 N N N -27.214 -6.231 -8.859 -5.146 -1.531 -0.025 H17A Y08 60 Y08 H19 H19 H 0 1 N N N -30.570 -5.365 -5.888 -7.467 2.384 0.585 H19 Y08 61 Y08 H20 H20 H 0 1 N N N -32.261 -6.079 -8.477 -8.970 0.798 -1.665 H20 Y08 62 Y08 H20A H20A H 0 0 N N N -32.777 -6.298 -6.770 -9.563 2.339 -0.844 H20A Y08 63 Y08 H21 H21 H 0 1 N N N -32.395 -3.737 -6.325 -7.498 3.568 -1.658 H21 Y08 64 Y08 H21A H21A H 0 0 N N N -31.879 -3.517 -8.032 -6.905 2.027 -2.480 H21A Y08 65 Y08 H22 H22 H 0 1 N N N -20.917 -1.712 -13.166 3.044 -4.818 -1.256 H22 Y08 66 Y08 H22A H22A H 0 0 N N N -21.794 -2.904 -12.148 1.686 -4.035 -2.099 H22A Y08 67 Y08 H22B H22B H 0 0 N N N -21.968 -2.949 -13.935 3.221 -3.161 -1.881 H22B Y08 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y08 C11 N1 SING N N 1 Y08 N1 C12 SING N N 2 Y08 N1 HN1 SING N N 3 Y08 O1 C04 SING N N 4 Y08 O1 HO1 SING N N 5 Y08 C17 N2 SING N N 6 Y08 C18 N2 SING N N 7 Y08 N2 C16 SING N N 8 Y08 O2 C06 SING N N 9 Y08 O2 HO2 SING N N 10 Y08 O3 C05 SING N N 11 Y08 O3 HO3 SING N N 12 Y08 C11 O4 DOUB N N 13 Y08 O5 C18 DOUB N N 14 Y08 C22 O6 SING N N 15 Y08 O6 C07 SING N N 16 Y08 C02 C01 SING N N 17 Y08 C09 C01 SING N N 18 Y08 C01 C10 SING N N 19 Y08 C01 C08 SING N N 20 Y08 C03 C02 DOUB N E 21 Y08 C02 H02 SING N N 22 Y08 C04 C03 SING N N 23 Y08 C03 H03 SING N N 24 Y08 C05 C04 SING N N 25 Y08 C04 H04 SING N N 26 Y08 C05 C06 SING N N 27 Y08 C05 H05 SING N N 28 Y08 C06 C07 SING N N 29 Y08 C06 H06 SING N N 30 Y08 C07 C11 SING N N 31 Y08 C07 H07 SING N N 32 Y08 C08 H08 SING N N 33 Y08 C08 H08A SING N N 34 Y08 C08 H08B SING N N 35 Y08 C09 H09 SING N N 36 Y08 C09 H09A SING N N 37 Y08 C09 H09B SING N N 38 Y08 C10 H10 SING N N 39 Y08 C10 H10A SING N N 40 Y08 C10 H10B SING N N 41 Y08 C12 C13 SING N N 42 Y08 C12 H12 SING N N 43 Y08 C12 H12A SING N N 44 Y08 C13 C14 SING N N 45 Y08 C13 C17 SING N N 46 Y08 C13 H13 SING N N 47 Y08 C14 C15 SING N N 48 Y08 C14 H14 SING N N 49 Y08 C14 H14A SING N N 50 Y08 C15 C16 SING N N 51 Y08 C15 H15 SING N N 52 Y08 C15 H15A SING N N 53 Y08 C16 H16 SING N N 54 Y08 C16 H16A SING N N 55 Y08 C17 H17 SING N N 56 Y08 C17 H17A SING N N 57 Y08 C18 C19 SING N N 58 Y08 C20 C19 SING N N 59 Y08 C21 C19 SING N N 60 Y08 C19 H19 SING N N 61 Y08 C20 C21 SING N N 62 Y08 C20 H20 SING N N 63 Y08 C20 H20A SING N N 64 Y08 C21 H21 SING N N 65 Y08 C21 H21A SING N N 66 Y08 C22 H22 SING N N 67 Y08 C22 H22A SING N N 68 Y08 C22 H22B SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y08 SMILES ACDLabs 12.01 "O=C(N1CCCC(CNC(=O)C(OC)C(O)C(O)C(O)/C=C/C(C)(C)C)C1)C2CC2" Y08 InChI InChI 1.03 "InChI=1S/C22H38N2O6/c1-22(2,3)10-9-16(25)17(26)18(27)19(30-4)20(28)23-12-14-6-5-11-24(13-14)21(29)15-7-8-15/h9-10,14-19,25-27H,5-8,11-13H2,1-4H3,(H,23,28)/b10-9+/t14-,16+,17-,18+,19+/m0/s1" Y08 InChIKey InChI 1.03 JFNUXOSYQRHRBI-NNURDPEKSA-N Y08 SMILES_CANONICAL CACTVS 3.370 "CO[C@H]([C@H](O)[C@@H](O)[C@H](O)\C=C\C(C)(C)C)C(=O)NC[C@@H]1CCCN(C1)C(=O)C2CC2" Y08 SMILES CACTVS 3.370 "CO[CH]([CH](O)[CH](O)[CH](O)C=CC(C)(C)C)C(=O)NC[CH]1CCCN(C1)C(=O)C2CC2" Y08 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(C)/C=C/[C@H]([C@@H]([C@H]([C@H](C(=O)NC[C@@H]1CCCN(C1)C(=O)C2CC2)OC)O)O)O" Y08 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)(C)C=CC(C(C(C(C(=O)NCC1CCCN(C1)C(=O)C2CC2)OC)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y08 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4S,5R,6E)-N-{[(3S)-1-(cyclopropylcarbonyl)piperidin-3-yl]methyl}-3,4,5-trihydroxy-2-methoxy-8,8-dimethylnon-6-enamide (non-preferred name)" Y08 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(E,2R,3R,4S,5R)-N-[[(3S)-1-cyclopropylcarbonylpiperidin-3-yl]methyl]-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y08 "Create component" 2010-11-15 RCSB Y08 "Modify descriptor" 2011-06-04 RCSB Y08 "Modify name" 2012-06-17 RCSB #