data_Y0B # _chem_comp.id Y0B _chem_comp.name "2-methoxy-6-{[(1-propyl-1H-benzimidazol-2-yl)amino]methyl}phenol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H21 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-09 _chem_comp.pdbx_modified_date 2024-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 311.378 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y0B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8T0N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y0B C1 C1 C 0 1 Y N N N N N 41.564 -15.424 16.202 -4.386 2.172 0.239 C1 Y0B 1 Y0B C10 C2 C 0 1 N N N N N N 37.244 -17.604 15.405 -1.946 -1.999 -0.660 C10 Y0B 2 Y0B C11 C3 C 0 1 N N N N N N 36.486 -16.524 14.657 -2.044 -2.889 0.581 C11 Y0B 3 Y0B C12 C4 C 0 1 N N N N N N 35.114 -16.270 15.313 -1.732 -4.336 0.196 C12 Y0B 4 Y0B C14 C5 C 0 1 N N N N N N 40.325 -20.088 13.148 0.879 1.212 0.707 C14 Y0B 5 Y0B C15 C6 C 0 1 Y N N N N N 40.905 -19.320 11.930 2.305 0.729 0.770 C15 Y0B 6 Y0B C16 C7 C 0 1 Y N N N N N 40.245 -19.368 10.678 2.855 0.357 1.983 C16 Y0B 7 Y0B C17 C8 C 0 1 Y N N N N N 40.765 -18.705 9.572 4.161 -0.093 2.043 C17 Y0B 8 Y0B C18 C9 C 0 1 Y N N N N N 41.955 -17.981 9.686 4.922 -0.173 0.892 C18 Y0B 9 Y0B C19 C10 C 0 1 Y N N N N N 42.623 -17.935 10.927 4.376 0.198 -0.326 C19 Y0B 10 Y0B C2 C11 C 0 1 Y N N N N N 41.099 -14.365 16.986 -5.647 1.719 -0.078 C2 Y0B 11 Y0B C20 C12 C 0 1 Y N N N N N 42.096 -18.605 12.026 3.062 0.650 -0.388 C20 Y0B 12 Y0B C23 C13 C 0 1 N N N N N N 43.930 -16.059 10.295 6.464 -0.355 -1.322 C23 Y0B 13 Y0B C3 C14 C 0 1 Y N N N N N 39.730 -14.259 17.270 -5.840 0.412 -0.498 C3 Y0B 14 Y0B C4 C15 C 0 1 Y N N N N N 38.833 -15.217 16.775 -4.771 -0.453 -0.605 C4 Y0B 15 Y0B C5 C16 C 0 1 Y N N N N N 39.309 -16.293 15.976 -3.494 -0.014 -0.290 C5 Y0B 16 Y0B C6 C17 C 0 1 Y N N N N N 40.648 -16.402 15.688 -3.292 1.311 0.131 C6 Y0B 17 Y0B C8 C18 C 0 1 Y N N N N N 39.622 -18.093 14.715 -1.345 0.327 0.122 C8 Y0B 18 Y0B N13 N1 N 0 1 N N N N N N 39.311 -19.317 13.929 0.012 0.120 0.257 N13 Y0B 19 Y0B N7 N2 N 0 1 Y N N N N N 40.812 -17.539 14.903 -1.961 1.457 0.367 N7 Y0B 20 Y0B N9 N3 N 0 1 Y N N N N N 38.694 -17.343 15.356 -2.245 -0.613 -0.291 N9 Y0B 21 Y0B O21 O1 O 0 1 N N N N N N 42.798 -18.530 13.223 2.520 1.010 -1.582 O21 Y0B 22 Y0B O22 O2 O 0 1 N N N N N N 43.839 -17.218 11.116 5.123 0.119 -1.460 O22 Y0B 23 Y0B H11 H1 H 0 1 N N N N N N 42.618 -15.507 15.982 -4.243 3.192 0.566 H11 Y0B 24 Y0B H101 H2 H 0 0 N N N N N N 36.914 -17.618 16.454 -0.937 -2.056 -1.069 H101 Y0B 25 Y0B H102 H3 H 0 0 N N N N N N 37.036 -18.580 14.942 -2.662 -2.338 -1.408 H102 Y0B 26 Y0B H111 H4 H 0 0 N N N N N N 36.335 -16.844 13.615 -1.328 -2.549 1.329 H111 Y0B 27 Y0B H112 H5 H 0 0 N N N N N N 37.072 -15.593 14.673 -3.052 -2.831 0.991 H112 Y0B 28 Y0B H121 H6 H 0 0 N N N N N N 34.581 -15.485 14.757 -2.448 -4.676 -0.552 H121 Y0B 29 Y0B H123 H7 H 0 0 N N N N N N 34.522 -17.197 15.296 -0.723 -4.394 -0.214 H123 Y0B 30 Y0B H122 H8 H 0 0 N N N N N N 35.260 -15.947 16.354 -1.801 -4.970 1.080 H122 Y0B 31 Y0B H141 H9 H 0 0 N N N N N N 39.850 -21.010 12.781 0.563 1.543 1.697 H141 Y0B 32 Y0B H142 H10 H 0 0 N N N N N N 41.156 -20.346 13.821 0.808 2.044 0.006 H142 Y0B 33 Y0B H161 H11 H 0 0 N N N N N N 39.326 -19.927 10.581 2.264 0.419 2.884 H161 Y0B 34 Y0B H171 H12 H 0 0 N N N N N N 40.249 -18.750 8.624 4.588 -0.382 2.992 H171 Y0B 35 Y0B H181 H13 H 0 0 N N N N N N 42.360 -17.461 8.830 5.942 -0.524 0.942 H181 Y0B 36 Y0B H21 H14 H 0 1 N N N N N N 41.791 -13.631 17.372 -6.492 2.387 0.002 H21 Y0B 37 Y0B H232 H15 H 0 0 N N N N N N 44.886 -15.549 10.484 6.452 -1.363 -0.908 H232 Y0B 38 Y0B H233 H16 H 0 0 N N N N N N 43.875 -16.354 9.237 6.947 -0.368 -2.299 H233 Y0B 39 Y0B H231 H17 H 0 0 N N N N N N 43.099 -15.378 10.529 7.016 0.306 -0.653 H231 Y0B 40 Y0B H31 H18 H 0 1 N N N N N N 39.366 -13.439 17.871 -6.834 0.069 -0.744 H31 Y0B 41 Y0B H41 H19 H 0 1 N N N N N N 37.780 -15.137 17.001 -4.928 -1.470 -0.933 H41 Y0B 42 Y0B H131 H20 H 0 0 N N N N N N 38.610 -19.045 13.269 0.392 -0.749 0.055 H131 Y0B 43 Y0B H211 H21 H 0 0 N N N N N N 42.339 -19.025 13.891 2.639 1.944 -1.802 H211 Y0B 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y0B C17 C18 DOUB Y N 1 Y0B C17 C16 SING Y N 2 Y0B C18 C19 SING Y N 3 Y0B C23 O22 SING N N 4 Y0B C16 C15 DOUB Y N 5 Y0B C19 O22 SING N N 6 Y0B C19 C20 DOUB Y N 7 Y0B C15 C20 SING Y N 8 Y0B C15 C14 SING N N 9 Y0B C20 O21 SING N N 10 Y0B C14 N13 SING N N 11 Y0B N13 C8 SING N N 12 Y0B C11 C12 SING N N 13 Y0B C11 C10 SING N N 14 Y0B C8 N7 DOUB Y N 15 Y0B C8 N9 SING Y N 16 Y0B N7 C6 SING Y N 17 Y0B N9 C10 SING N N 18 Y0B N9 C5 SING Y N 19 Y0B C6 C5 DOUB Y N 20 Y0B C6 C1 SING Y N 21 Y0B C5 C4 SING Y N 22 Y0B C1 C2 DOUB Y N 23 Y0B C4 C3 DOUB Y N 24 Y0B C2 C3 SING Y N 25 Y0B C1 H11 SING N N 26 Y0B C10 H101 SING N N 27 Y0B C10 H102 SING N N 28 Y0B C11 H111 SING N N 29 Y0B C11 H112 SING N N 30 Y0B C12 H121 SING N N 31 Y0B C12 H123 SING N N 32 Y0B C12 H122 SING N N 33 Y0B C14 H141 SING N N 34 Y0B C14 H142 SING N N 35 Y0B C16 H161 SING N N 36 Y0B C17 H171 SING N N 37 Y0B C18 H181 SING N N 38 Y0B C2 H21 SING N N 39 Y0B C23 H232 SING N N 40 Y0B C23 H233 SING N N 41 Y0B C23 H231 SING N N 42 Y0B C3 H31 SING N N 43 Y0B C4 H41 SING N N 44 Y0B N13 H131 SING N N 45 Y0B O21 H211 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y0B SMILES ACDLabs 12.01 "COc1cccc(CNc2nc3ccccc3n2CCC)c1O" Y0B InChI InChI 1.06 "InChI=1S/C18H21N3O2/c1-3-11-21-15-9-5-4-8-14(15)20-18(21)19-12-13-7-6-10-16(23-2)17(13)22/h4-10,22H,3,11-12H2,1-2H3,(H,19,20)" Y0B InChIKey InChI 1.06 PIPSFOMKWXEBPD-UHFFFAOYSA-N Y0B SMILES_CANONICAL CACTVS 3.385 "CCCn1c(NCc2cccc(OC)c2O)nc3ccccc13" Y0B SMILES CACTVS 3.385 "CCCn1c(NCc2cccc(OC)c2O)nc3ccccc13" Y0B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCn1c2ccccc2nc1NCc3cccc(c3O)OC" Y0B SMILES "OpenEye OEToolkits" 2.0.7 "CCCn1c2ccccc2nc1NCc3cccc(c3O)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y0B "SYSTEMATIC NAME" ACDLabs 12.01 "2-methoxy-6-{[(1-propyl-1H-benzimidazol-2-yl)amino]methyl}phenol" Y0B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-methoxy-6-[[(1-propylbenzimidazol-2-yl)amino]methyl]phenol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y0B "Create component" 2023-06-09 RCSB Y0B "Initial release" 2024-05-01 RCSB #