data_Y0D # _chem_comp.id Y0D _chem_comp.name "N-(cyclopropylmethyl)-4-(thiophene-2-carbonyl)piperazine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H19 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-25 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 293.385 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y0D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S9C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y0D N1 N1 N 0 1 N N N -16.022 17.217 25.975 -3.370 -0.042 0.036 N1 Y0D 1 Y0D N3 N2 N 0 1 N N N -19.144 13.266 25.580 1.288 0.864 0.336 N3 Y0D 2 Y0D C4 C1 C 0 1 N N N -13.827 20.263 25.378 -7.193 0.174 0.535 C4 Y0D 3 Y0D C5 C2 C 0 1 N N N -14.391 19.540 24.202 -6.784 0.513 -0.899 C5 Y0D 4 Y0D C6 C3 C 0 1 N N N -18.276 14.668 27.360 0.113 -1.212 -0.173 C6 Y0D 5 Y0D C7 C4 C 0 1 N N N -18.508 13.246 26.897 1.127 -0.535 0.757 C7 Y0D 6 Y0D C8 C5 C 0 1 N N N -20.234 12.606 25.188 2.508 1.356 0.042 C8 Y0D 7 Y0D C10 C6 C 0 1 Y N N -21.695 13.186 27.230 4.940 0.819 0.414 C10 Y0D 8 Y0D C13 C7 C 0 1 N N N -18.526 14.164 24.602 0.094 1.716 0.235 C13 Y0D 9 Y0D C1 C8 C 0 1 N N N -16.640 16.442 26.875 -2.297 -0.858 0.026 C1 Y0D 10 Y0D C11 C9 C 0 1 Y N N -23.070 13.038 27.553 5.844 -0.211 0.312 C11 Y0D 11 Y0D C12 C10 C 0 1 Y N N -23.709 12.159 26.760 5.339 -1.366 -0.138 C12 Y0D 12 Y0D C14 C11 C 0 1 N N N -17.246 14.756 25.139 -0.917 1.033 -0.694 C14 Y0D 13 Y0D C2 C12 C 0 1 N N N -15.497 18.535 26.307 -4.710 -0.597 0.245 C2 Y0D 14 Y0D C3 C13 C 0 1 N N N -14.265 18.846 25.512 -5.740 0.534 0.219 C3 Y0D 15 Y0D C9 C14 C 0 1 Y N N -21.388 12.538 26.038 3.674 0.468 0.038 C9 Y0D 16 Y0D N2 N3 N 0 1 N N N -17.461 15.438 26.413 -1.078 -0.364 -0.268 N2 Y0D 17 Y0D O1 O1 O 0 1 N N N -16.526 16.647 28.080 -2.429 -2.039 0.282 O1 Y0D 18 Y0D O2 O2 O 0 1 N N N -20.304 12.161 24.054 2.642 2.537 -0.219 O2 Y0D 19 Y0D S1 S1 S 0 1 Y N N -22.716 11.570 25.520 3.671 -1.218 -0.463 S1 Y0D 20 Y0D H1 H1 H 0 1 N N N -15.917 16.879 25.040 -3.255 0.912 -0.090 H1 Y0D 21 Y0D H5 H2 H 0 1 N N N -14.405 21.066 25.860 -7.787 0.910 1.077 H5 Y0D 22 Y0D H6 H3 H 0 1 N N N -12.756 20.513 25.408 -7.415 -0.869 0.763 H6 Y0D 23 Y0D H7 H4 H 0 1 N N N -15.385 19.809 23.816 -6.737 -0.307 -1.616 H7 Y0D 24 Y0D H8 H5 H 0 1 N N N -13.736 19.257 23.364 -7.110 1.472 -1.303 H8 Y0D 25 Y0D H10 H6 H 0 1 N N N -17.761 14.644 28.331 0.552 -1.339 -1.163 H10 Y0D 26 Y0D H9 H7 H 0 1 N N N -19.250 15.166 27.474 -0.162 -2.186 0.233 H9 Y0D 27 Y0D H12 H8 H 0 1 N N N -17.545 12.719 26.832 2.085 -1.050 0.691 H12 Y0D 28 Y0D H11 H9 H 0 1 N N N -19.162 12.728 27.614 0.761 -0.568 1.783 H11 Y0D 29 Y0D H13 H10 H 0 1 N N N -20.981 13.730 27.831 5.203 1.807 0.762 H13 Y0D 30 Y0D H17 H11 H 0 1 N N N -18.303 13.598 23.686 -0.346 1.846 1.223 H17 Y0D 31 Y0D H16 H12 H 0 1 N N N -19.228 14.978 24.368 0.371 2.686 -0.176 H16 Y0D 32 Y0D H14 H13 H 0 1 N N N -23.554 13.577 28.354 6.885 -0.097 0.575 H14 Y0D 33 Y0D H15 H14 H 0 1 N N N -24.738 11.862 26.898 5.912 -2.272 -0.277 H15 Y0D 34 Y0D H19 H15 H 0 1 N N N -16.513 13.949 25.286 -1.876 1.547 -0.631 H19 Y0D 35 Y0D H18 H16 H 0 1 N N N -16.853 15.479 24.409 -0.551 1.065 -1.720 H18 Y0D 36 Y0D H3 H17 H 0 1 N N N -16.265 19.292 26.089 -4.935 -1.312 -0.547 H3 Y0D 37 Y0D H2 H18 H 0 1 N N N -15.249 18.562 27.378 -4.748 -1.101 1.211 H2 Y0D 38 Y0D H4 H19 H 0 1 N N N -13.457 18.103 25.582 -5.378 1.507 0.552 H4 Y0D 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y0D O1 C1 DOUB N N 1 Y0D C1 N1 SING N N 2 Y0D N1 C2 SING N N 3 Y0D C2 C3 SING N N 4 Y0D C3 C4 SING N N 5 Y0D C4 C5 SING N N 6 Y0D C1 N2 SING N N 7 Y0D N2 C6 SING N N 8 Y0D C6 C7 SING N N 9 Y0D C7 N3 SING N N 10 Y0D N3 C8 SING N N 11 Y0D C8 O2 DOUB N N 12 Y0D C8 C9 SING N N 13 Y0D C9 C10 DOUB Y N 14 Y0D C10 C11 SING Y N 15 Y0D C11 C12 DOUB Y N 16 Y0D C12 S1 SING Y N 17 Y0D N3 C13 SING N N 18 Y0D C13 C14 SING N N 19 Y0D C3 C5 SING N N 20 Y0D N2 C14 SING N N 21 Y0D C9 S1 SING Y N 22 Y0D N1 H1 SING N N 23 Y0D C4 H5 SING N N 24 Y0D C4 H6 SING N N 25 Y0D C5 H7 SING N N 26 Y0D C5 H8 SING N N 27 Y0D C6 H10 SING N N 28 Y0D C6 H9 SING N N 29 Y0D C7 H12 SING N N 30 Y0D C7 H11 SING N N 31 Y0D C10 H13 SING N N 32 Y0D C13 H17 SING N N 33 Y0D C13 H16 SING N N 34 Y0D C11 H14 SING N N 35 Y0D C12 H15 SING N N 36 Y0D C14 H19 SING N N 37 Y0D C14 H18 SING N N 38 Y0D C2 H3 SING N N 39 Y0D C2 H2 SING N N 40 Y0D C3 H4 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y0D SMILES ACDLabs 12.01 "N(CC1CC1)C(N3CCN(C(=O)c2cccs2)CC3)=O" Y0D InChI InChI 1.03 "InChI=1S/C14H19N3O2S/c18-13(12-2-1-9-20-12)16-5-7-17(8-6-16)14(19)15-10-11-3-4-11/h1-2,9,11H,3-8,10H2,(H,15,19)" Y0D InChIKey InChI 1.03 JVDHYYWAYKTYDN-UHFFFAOYSA-N Y0D SMILES_CANONICAL CACTVS 3.385 "O=C(NCC1CC1)N2CCN(CC2)C(=O)c3sccc3" Y0D SMILES CACTVS 3.385 "O=C(NCC1CC1)N2CCN(CC2)C(=O)c3sccc3" Y0D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)C(=O)N2CCN(CC2)C(=O)NCC3CC3" Y0D SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)C(=O)N2CCN(CC2)C(=O)NCC3CC3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y0D "SYSTEMATIC NAME" ACDLabs 12.01 "N-(cyclopropylmethyl)-4-(thiophene-2-carbonyl)piperazine-1-carboxamide" Y0D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(cyclopropylmethyl)-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y0D "Create component" 2021-01-25 RCSB Y0D "Initial release" 2021-02-17 RCSB ##