data_Y0F # _chem_comp.id Y0F _chem_comp.name "(2E)-1-[(3aS,8aS)-2-(1,4,6,7-tetrahydro-5H-[1,2,3]triazolo[4,5-c]pyridine-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 F3 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-09 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.505 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y0F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G5M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y0F C01 C1 C 0 1 N N N N N N -14.615 9.697 49.780 -0.520 0.901 1.725 C01 Y0F 1 Y0F C02 C2 C 0 1 N N N N N N -14.624 11.156 50.003 0.150 -0.252 1.040 C02 Y0F 2 Y0F N03 N1 N 0 1 N N N N N N -13.860 9.203 48.647 -0.387 2.157 0.998 N03 Y0F 3 Y0F C04 C3 C 0 1 N N N N N N -12.557 9.477 48.111 0.861 2.884 0.977 C04 Y0F 4 Y0F C05 C4 C 0 1 N N N N N N -11.618 10.272 48.959 1.942 2.046 0.322 C05 Y0F 5 Y0F C06 C5 C 0 1 N N R N N N -13.308 11.971 50.089 1.633 -0.338 1.179 C06 Y0F 6 Y0F C07 C6 C 0 1 N N S N N N -12.133 11.709 49.236 2.465 0.922 1.162 C07 Y0F 7 Y0F N09 N2 N 0 1 N N N N N N -11.368 12.412 51.399 3.732 -0.966 0.301 N09 Y0F 8 Y0F C10 C7 C 0 1 N N N N N N -12.828 12.135 51.523 2.286 -1.239 0.108 C10 Y0F 9 Y0F C13 C8 C 0 1 N N N N N N -14.532 8.173 47.892 -1.451 2.651 0.333 C13 Y0F 10 Y0F C16 C9 C 0 1 N N N N N N -13.989 6.164 46.561 -3.714 2.320 -0.504 C16 Y0F 11 Y0F C17 C10 C 0 1 Y N N N N N -13.079 5.477 45.600 -4.955 1.536 -0.592 C17 Y0F 12 Y0F C18 C11 C 0 1 Y N N N N N -12.994 4.089 45.596 -6.024 1.999 -1.368 C18 Y0F 13 Y0F C19 C12 C 0 1 Y N N N N N -12.140 3.472 44.703 -7.183 1.261 -1.448 C19 Y0F 14 Y0F C20 C13 C 0 1 Y N N N N N -11.383 4.265 43.791 -7.293 0.058 -0.760 C20 Y0F 15 Y0F C21 C14 C 0 1 Y N N N N N -11.501 5.652 43.796 -6.234 -0.406 0.012 C21 Y0F 16 Y0F C22 C15 C 0 1 Y N N N N N -12.341 6.274 44.696 -5.069 0.321 0.094 C22 Y0F 17 Y0F C24 C16 C 0 1 N N N N N N -10.533 2.385 42.676 -8.485 -1.893 -0.110 C24 Y0F 18 Y0F C28 C17 C 0 1 N N N N N N -10.514 13.266 52.235 4.742 -1.854 0.221 C28 Y0F 19 Y0F C08 C18 C 0 1 N N N N N N -11.002 12.315 49.999 3.839 0.475 0.599 C08 Y0F 20 Y0F C14 C19 C 0 1 N N N N N N -13.832 7.532 46.716 -2.685 1.871 0.245 C14 Y0F 21 Y0F O15 O1 O 0 1 N N N N N N -15.638 7.805 48.192 -1.383 3.746 -0.195 O15 Y0F 22 Y0F O23 O2 O 0 1 N N N N N N -10.511 3.710 42.869 -8.439 -0.666 -0.842 O23 Y0F 23 Y0F F25 F1 F 0 1 N N N N N N -9.964 2.167 41.514 -8.302 -1.630 1.252 F25 Y0F 24 Y0F F26 F2 F 0 1 N N N N N N -9.955 1.746 43.711 -9.727 -2.505 -0.305 F26 Y0F 25 Y0F F27 F3 F 0 1 N N N N N N -11.800 2.037 42.681 -7.470 -2.743 -0.561 F27 Y0F 26 Y0F N29 N3 N 0 1 N N N N N N -9.199 12.891 52.754 6.014 -1.447 0.407 N29 Y0F 27 Y0F O30 O3 O 0 1 N N N N N N -10.978 14.407 52.494 4.507 -3.022 -0.020 O30 Y0F 28 Y0F C31 C20 C 0 1 N N N N N N -9.185 11.678 53.503 7.105 -2.424 0.539 C31 Y0F 29 Y0F C32 C21 C 0 1 N N N N N N -7.990 11.094 53.932 8.072 -2.264 -0.641 C32 Y0F 30 Y0F C33 C22 C 0 1 N N N N N N -8.265 13.880 53.089 6.344 -0.011 0.476 C33 Y0F 31 Y0F C34 C23 C 0 1 Y N N N N N -6.957 13.473 53.796 7.580 0.202 -0.361 C34 Y0F 32 Y0F C35 C24 C 0 1 Y N N N N N -6.839 12.059 54.230 8.344 -0.798 -0.849 C35 Y0F 33 Y0F N36 N4 N 0 1 Y N N N N N -5.620 11.911 54.805 9.344 -0.211 -1.529 N36 Y0F 34 Y0F N37 N5 N 0 1 Y N N N N N -4.951 13.177 54.770 9.184 1.068 -1.452 N37 Y0F 35 Y0F N38 N6 N 0 1 Y N N N N N -5.817 14.127 54.130 8.137 1.338 -0.765 N38 Y0F 36 Y0F H39 H1 H 0 1 N N N N N N -14.200 9.227 50.684 -1.579 0.672 1.839 H39 Y0F 37 Y0F H40 H2 H 0 1 N N N N N N -15.659 9.377 49.647 -0.082 1.022 2.716 H40 Y0F 38 Y0F H42 H3 H 0 1 N N N N N N -15.206 11.592 49.178 -0.280 -1.174 1.432 H42 Y0F 39 Y0F H41 H4 H 0 1 N N N N N N -15.154 11.321 50.953 -0.087 -0.198 -0.022 H41 Y0F 40 Y0F H43 H5 H 0 1 N N N N N N -12.076 8.510 47.903 0.731 3.809 0.416 H43 Y0F 41 Y0F H44 H6 H 0 1 N N N N N N -12.697 10.027 47.169 1.158 3.122 1.999 H44 Y0F 42 Y0F H45 H7 H 0 1 N N N N N N -11.487 9.754 49.920 1.541 1.628 -0.601 H45 Y0F 43 Y0F H46 H8 H 0 1 N N N N N N -10.649 10.339 48.443 2.775 2.700 0.065 H46 Y0F 44 Y0F H12 H9 H 0 1 N N N N N N -13.621 12.987 49.805 1.832 -0.828 2.132 H12 Y0F 45 Y0F H11 H10 H 0 1 N N N N N N -12.249 12.233 48.276 2.606 1.273 2.184 H11 Y0F 46 Y0F H49 H11 H 0 1 N N N N N N -13.343 12.975 52.012 2.061 -2.289 0.296 H49 Y0F 47 Y0F H50 H12 H 0 1 N N N N N N -13.001 11.214 52.099 1.966 -0.947 -0.892 H50 Y0F 48 Y0F H52 H13 H 0 1 N N N N N N -14.739 5.618 47.113 -3.627 3.255 -1.038 H52 Y0F 49 Y0F H53 H14 H 0 1 N N N N N N -13.587 3.502 46.281 -5.940 2.934 -1.902 H53 Y0F 50 Y0F H54 H15 H 0 1 N N N N N N -12.046 2.396 44.695 -8.009 1.617 -2.046 H54 Y0F 51 Y0F H55 H16 H 0 1 N N N N N N -10.933 6.243 43.093 -6.325 -1.341 0.545 H55 Y0F 52 Y0F H56 H17 H 0 1 N N N N N N -12.433 7.350 44.710 -4.245 -0.043 0.690 H56 Y0F 53 Y0F H48 H18 H 0 1 N N N N N N -10.108 11.683 49.896 4.066 1.028 -0.312 H48 Y0F 54 Y0F H47 H19 H 0 1 N N N N N N -10.788 13.319 49.604 4.619 0.645 1.342 H47 Y0F 55 Y0F H51 H20 H 0 1 N N N N N N -13.237 8.114 46.028 -2.772 0.936 0.778 H51 Y0F 56 Y0F H57 H21 H 0 1 N N N N N N -9.780 11.867 54.409 7.639 -2.249 1.474 H57 Y0F 57 Y0F H58 H22 H 0 1 N N N N N N -9.692 10.925 52.882 6.692 -3.433 0.538 H58 Y0F 58 Y0F H59 H23 H 0 1 N N N N N N -8.203 10.530 54.852 9.006 -2.781 -0.421 H59 Y0F 59 Y0F H60 H24 H 0 1 N N N N N N -7.653 10.401 53.147 7.623 -2.684 -1.541 H60 Y0F 60 Y0F H62 H25 H 0 1 N N N N N N -7.981 14.383 52.153 5.519 0.579 0.077 H62 Y0F 61 Y0F H61 H26 H 0 1 N N N N N N -8.778 14.595 53.749 6.542 0.275 1.509 H61 Y0F 62 Y0F H63 H27 H 0 1 N N N N N N -5.251 11.064 55.188 10.061 -0.668 -1.996 H63 Y0F 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y0F C01 C02 SING N N 1 Y0F C01 N03 SING N N 2 Y0F N03 C04 SING N N 3 Y0F C04 C05 SING N N 4 Y0F C02 C06 SING N N 5 Y0F C05 C07 SING N N 6 Y0F C06 C07 SING N N 7 Y0F C07 C08 SING N N 8 Y0F C08 N09 SING N N 9 Y0F C06 C10 SING N N 10 Y0F N09 C10 SING N N 11 Y0F N03 C13 SING N N 12 Y0F C13 C14 SING N N 13 Y0F C13 O15 DOUB N N 14 Y0F C14 C16 DOUB N E 15 Y0F C16 C17 SING N N 16 Y0F C17 C18 DOUB Y N 17 Y0F C18 C19 SING Y N 18 Y0F C19 C20 DOUB Y N 19 Y0F C20 C21 SING Y N 20 Y0F C17 C22 SING Y N 21 Y0F C21 C22 DOUB Y N 22 Y0F C20 O23 SING N N 23 Y0F O23 C24 SING N N 24 Y0F C24 F25 SING N N 25 Y0F C24 F26 SING N N 26 Y0F C24 F27 SING N N 27 Y0F N09 C28 SING N N 28 Y0F C28 N29 SING N N 29 Y0F C28 O30 DOUB N N 30 Y0F N29 C31 SING N N 31 Y0F C31 C32 SING N N 32 Y0F N29 C33 SING N N 33 Y0F C33 C34 SING N N 34 Y0F C32 C35 SING N N 35 Y0F C34 C35 DOUB Y N 36 Y0F C35 N36 SING Y N 37 Y0F N36 N37 SING Y N 38 Y0F C34 N38 SING Y N 39 Y0F N37 N38 DOUB Y N 40 Y0F C01 H39 SING N N 41 Y0F C01 H40 SING N N 42 Y0F C02 H42 SING N N 43 Y0F C02 H41 SING N N 44 Y0F C04 H43 SING N N 45 Y0F C04 H44 SING N N 46 Y0F C05 H45 SING N N 47 Y0F C05 H46 SING N N 48 Y0F C06 H12 SING N N 49 Y0F C07 H11 SING N N 50 Y0F C10 H49 SING N N 51 Y0F C10 H50 SING N N 52 Y0F C16 H52 SING N N 53 Y0F C18 H53 SING N N 54 Y0F C19 H54 SING N N 55 Y0F C21 H55 SING N N 56 Y0F C22 H56 SING N N 57 Y0F C08 H48 SING N N 58 Y0F C08 H47 SING N N 59 Y0F C14 H51 SING N N 60 Y0F C31 H57 SING N N 61 Y0F C31 H58 SING N N 62 Y0F C32 H59 SING N N 63 Y0F C32 H60 SING N N 64 Y0F C33 H62 SING N N 65 Y0F C33 H61 SING N N 66 Y0F N36 H63 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y0F SMILES ACDLabs 12.01 "FC(F)(F)Oc1ccc(cc1)/C=C/C(=O)N1CCC2CN(CC2CC1)C(=O)N1CCc2[NH]nnc2C1" Y0F InChI InChI 1.06 "InChI=1S/C24H27F3N6O3/c25-24(26,27)36-19-4-1-16(2-5-19)3-6-22(34)31-10-7-17-13-33(14-18(17)8-11-31)23(35)32-12-9-20-21(15-32)29-30-28-20/h1-6,17-18H,7-15H2,(H,28,29,30)" Y0F InChIKey InChI 1.06 JCUYLNIOELOLJV-UHFFFAOYSA-N Y0F SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)Oc1ccc(/C=C/C(=O)N2CC[C@H]3CN(C[C@H]3CC2)C(=O)N4CCc5[nH]nnc5C4)cc1" Y0F SMILES CACTVS 3.385 "FC(F)(F)Oc1ccc(C=CC(=O)N2CC[CH]3CN(C[CH]3CC2)C(=O)N4CCc5[nH]nnc5C4)cc1" Y0F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/C(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)N4CCc5c(nn[nH]5)C4)OC(F)(F)F" Y0F SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=CC(=O)N2CCC3CN(CC3CC2)C(=O)N4CCc5c(nn[nH]5)C4)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y0F "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-1-[(3aS,8aS)-2-(1,4,6,7-tetrahydro-5H-[1,2,3]triazolo[4,5-c]pyridine-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" Y0F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-1-[(3~{a}~{S},8~{a}~{R})-2-(1,4,6,7-tetrahydro-[1,2,3]triazolo[4,5-c]pyridin-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-6-yl]-3-[4-(trifluoromethyloxy)phenyl]prop-2-en-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y0F "Create component" 2023-06-09 RCSB Y0F "Initial release" 2024-12-18 RCSB #