data_Y0Q # _chem_comp.id Y0Q _chem_comp.name "[(3aR,3bR,6aR,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][5-chloro-4-(cyclopropylmethoxy)pyridin-2-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H25 Cl N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-09 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 492.957 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y0Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G37 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y0Q C10 C1 C 0 1 N N N N N N -11.022 13.171 51.151 3.329 -0.157 -0.026 C10 Y0Q 1 Y0Q C15 C2 C 0 1 N N N N N N -10.404 12.227 53.562 5.008 -1.744 0.933 C15 Y0Q 2 Y0Q C16 C3 C 0 1 Y N N N N N -9.012 12.636 53.699 6.106 -0.784 0.699 C16 Y0Q 3 Y0Q C18 C4 C 0 1 Y N N N N N -8.693 14.028 53.419 7.264 -0.841 1.487 C18 Y0Q 4 Y0Q C19 C5 C 0 1 Y N N N N N -7.379 14.541 53.590 8.283 0.040 1.282 C19 Y0Q 5 Y0Q C20 C6 C 0 1 Y N N N N N -8.083 11.726 54.220 5.989 0.169 -0.306 C20 Y0Q 6 Y0Q C21 C7 C 0 1 Y N N N N N -6.772 12.288 54.417 7.031 1.074 -0.522 C21 Y0Q 7 Y0Q C22 C8 C 0 1 Y N N N N N -6.434 13.658 54.099 8.183 1.006 0.283 C22 Y0Q 8 Y0Q C26 C9 C 0 1 N N N N N N -13.549 9.105 47.537 -2.554 -1.138 -0.970 C26 Y0Q 9 Y0Q C27 C10 C 0 1 Y N N N N N -12.723 8.916 46.312 -3.416 -0.034 -0.490 C27 Y0Q 10 Y0Q N1 N1 N 0 1 N N N N N N -13.028 9.742 48.645 -1.225 -0.949 -1.099 N1 Y0Q 11 Y0Q C2 C11 C 0 1 N N N N N N -13.915 9.785 49.841 -0.266 -1.958 -1.562 C2 Y0Q 12 Y0Q C3 C12 C 0 1 N N S N N N -12.987 10.375 50.880 1.129 -1.480 -1.120 C3 Y0Q 13 Y0Q C4 C13 C 0 1 N N R N N N -11.559 10.677 50.259 0.984 0.060 -1.053 C4 Y0Q 14 Y0Q C5 C14 C 0 1 N N N N N N -11.565 9.924 48.943 -0.513 0.296 -0.796 C5 Y0Q 15 Y0Q C6 C15 C 0 1 N N S N N N -13.121 11.893 51.139 1.321 -1.453 0.402 C6 Y0Q 16 Y0Q C7 C16 C 0 1 N N R N N N -11.893 12.231 50.236 1.819 0.004 0.237 C7 Y0Q 17 Y0Q C8 C17 C 0 1 N N N N N N -12.709 12.125 52.589 2.556 -2.231 0.887 C8 Y0Q 18 Y0Q N9 N2 N 0 1 N N N N N N -11.269 12.545 52.488 3.740 -1.407 0.625 N9 Y0Q 19 Y0Q O17 O1 O 0 1 N N N N N N -10.907 11.665 54.573 5.248 -2.839 1.404 O17 Y0Q 20 Y0Q N23 N3 N 0 1 Y N N N N N -5.077 13.777 54.376 9.015 2.005 -0.157 N23 Y0Q 21 Y0Q N24 N4 N 0 1 Y N N N N N -4.667 12.544 54.864 8.347 2.652 -1.206 N24 Y0Q 22 Y0Q N25 N5 N 0 1 Y N N N N N -5.574 11.673 54.869 7.206 2.090 -1.401 N25 Y0Q 23 Y0Q O28 O2 O 0 1 N N N N N N -14.750 8.698 47.564 -3.044 -2.215 -1.249 O28 Y0Q 24 Y0Q C29 C18 C 0 1 Y N N N N N -12.683 7.635 45.772 -4.786 -0.236 -0.360 C29 Y0Q 25 Y0Q C30 C19 C 0 1 Y N N N N N -11.903 7.516 44.634 -5.583 0.811 0.093 C30 Y0Q 26 Y0Q N31 N6 N 0 1 Y N N N N N -12.091 9.996 45.811 -2.873 1.138 -0.182 N31 Y0Q 27 Y0Q C32 C20 C 0 1 Y N N N N N -11.334 9.865 44.705 -3.599 2.147 0.249 C32 Y0Q 28 Y0Q C33 C21 C 0 1 Y N N N N N -11.225 8.609 44.094 -4.971 2.024 0.399 C33 Y0Q 29 Y0Q O34 O3 O 0 1 N N N N N N -11.713 6.385 43.973 -6.925 0.655 0.233 O34 Y0Q 30 Y0Q C35 C22 C 0 1 N N N N N N -12.094 5.181 44.622 -7.467 -0.624 -0.105 C35 Y0Q 31 Y0Q C36 C23 C 0 1 N N N N N N -11.819 4.152 43.511 -8.981 -0.609 0.115 C36 Y0Q 32 Y0Q CL37 CL1 CL 0 0 N N N N N N -10.254 8.555 42.678 -5.915 3.365 0.968 CL37 Y0Q 33 Y0Q C38 C24 C 0 1 N N N N N N -10.404 3.998 42.946 -9.768 -1.854 -0.302 C38 Y0Q 34 Y0Q C39 C25 C 0 1 N N N N N N -10.991 2.910 43.848 -9.549 -1.548 1.181 C39 Y0Q 35 Y0Q H47 H1 H 0 1 N N N N N N -9.958 13.135 50.875 3.516 -0.216 -1.098 H47 Y0Q 36 Y0Q H46 H2 H 0 1 N N N N N N -11.375 14.212 51.118 3.874 0.684 0.403 H46 Y0Q 37 Y0Q H48 H3 H 0 1 N N N N N N -9.475 14.688 53.072 7.348 -1.587 2.263 H48 Y0Q 38 Y0Q H49 H4 H 0 1 N N N N N N -7.128 15.561 53.338 9.171 -0.011 1.895 H49 Y0Q 39 Y0Q H50 H5 H 0 1 N N N N N N -8.327 10.700 54.452 5.098 0.209 -0.916 H50 Y0Q 40 Y0Q H40 H6 H 0 1 N N N N N N -14.790 10.430 49.670 -0.490 -2.923 -1.107 H40 Y0Q 41 Y0Q H41 H7 H 0 1 N N N N N N -14.252 8.778 50.128 -0.305 -2.039 -2.648 H41 Y0Q 42 Y0Q H12 H8 H 0 1 N N N N N N -12.927 9.783 51.805 1.958 -1.867 -1.712 H12 Y0Q 43 Y0Q H11 H9 H 0 1 N N N N N N -10.727 10.419 50.930 1.404 0.626 -1.885 H11 Y0Q 44 Y0Q H42 H10 H 0 1 N N N N N N -11.061 8.951 49.045 -0.877 1.095 -1.443 H42 Y0Q 45 Y0Q H43 H11 H 0 1 N N N N N N -11.073 10.511 48.153 -0.670 0.567 0.248 H43 Y0Q 46 Y0Q H14 H12 H 0 1 N N N N N N -14.074 12.347 50.829 0.417 -1.591 0.996 H14 Y0Q 47 Y0Q H13 H13 H 0 1 N N N N N N -12.135 12.638 49.243 1.555 0.719 1.016 H13 Y0Q 48 Y0Q H44 H14 H 0 1 N N N N N N -13.318 12.918 53.048 2.472 -2.426 1.956 H44 Y0Q 49 Y0Q H45 H15 H 0 1 N N N N N N -12.808 11.201 53.177 2.634 -3.173 0.345 H45 Y0Q 50 Y0Q H51 H16 H 0 1 N N N N N N -4.509 14.590 54.249 9.894 2.222 0.191 H51 Y0Q 51 Y0Q H52 H17 H 0 1 N N N N N N -13.216 6.802 46.205 -5.225 -1.191 -0.608 H52 Y0Q 52 Y0Q H53 H18 H 0 1 N N N N N N -10.817 10.719 44.293 -3.119 3.085 0.489 H53 Y0Q 53 Y0Q H54 H19 H 0 1 N N N N N N -11.478 4.989 45.513 -7.254 -0.844 -1.151 H54 Y0Q 54 Y0Q H55 H20 H 0 1 N N N N N N -13.156 5.194 44.907 -7.016 -1.388 0.527 H55 Y0Q 55 Y0Q H56 H21 H 0 1 N N N N N N -12.638 3.999 42.793 -9.466 0.359 -0.013 H56 Y0Q 56 Y0Q H58 H22 H 0 1 N N N N N N -10.258 3.804 41.873 -10.770 -1.704 -0.704 H58 Y0Q 57 Y0Q H57 H23 H 0 1 N N N N N N -9.591 4.640 43.316 -9.206 -2.682 -0.733 H57 Y0Q 58 Y0Q H59 H24 H 0 1 N N N N N N -10.600 2.770 44.866 -8.844 -2.177 1.726 H59 Y0Q 59 Y0Q H60 H25 H 0 1 N N N N N N -11.267 1.933 43.423 -10.407 -1.198 1.755 H60 Y0Q 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y0Q N1 C2 SING N N 1 Y0Q N1 C5 SING N N 2 Y0Q N1 C26 SING N N 3 Y0Q C2 C3 SING N N 4 Y0Q C3 C4 SING N N 5 Y0Q C3 C6 SING N N 6 Y0Q C4 C5 SING N N 7 Y0Q C4 C7 SING N N 8 Y0Q C6 C7 SING N N 9 Y0Q C6 C8 SING N N 10 Y0Q C7 C10 SING N N 11 Y0Q C8 N9 SING N N 12 Y0Q N9 C10 SING N N 13 Y0Q N9 C15 SING N N 14 Y0Q C15 C16 SING N N 15 Y0Q C15 O17 DOUB N N 16 Y0Q C16 C18 DOUB Y N 17 Y0Q C16 C20 SING Y N 18 Y0Q C18 C19 SING Y N 19 Y0Q C19 C22 DOUB Y N 20 Y0Q C20 C21 DOUB Y N 21 Y0Q C21 C22 SING Y N 22 Y0Q C21 N25 SING Y N 23 Y0Q C22 N23 SING Y N 24 Y0Q N23 N24 SING Y N 25 Y0Q N24 N25 DOUB Y N 26 Y0Q C26 C27 SING N N 27 Y0Q C26 O28 DOUB N N 28 Y0Q C27 C29 DOUB Y N 29 Y0Q C27 N31 SING Y N 30 Y0Q C29 C30 SING Y N 31 Y0Q C30 C33 DOUB Y N 32 Y0Q C30 O34 SING N N 33 Y0Q N31 C32 DOUB Y N 34 Y0Q C32 C33 SING Y N 35 Y0Q C33 CL37 SING N N 36 Y0Q O34 C35 SING N N 37 Y0Q C35 C36 SING N N 38 Y0Q C36 C38 SING N N 39 Y0Q C36 C39 SING N N 40 Y0Q C38 C39 SING N N 41 Y0Q C10 H47 SING N N 42 Y0Q C10 H46 SING N N 43 Y0Q C18 H48 SING N N 44 Y0Q C19 H49 SING N N 45 Y0Q C20 H50 SING N N 46 Y0Q C2 H40 SING N N 47 Y0Q C2 H41 SING N N 48 Y0Q C3 H12 SING N N 49 Y0Q C4 H11 SING N N 50 Y0Q C5 H42 SING N N 51 Y0Q C5 H43 SING N N 52 Y0Q C6 H14 SING N N 53 Y0Q C7 H13 SING N N 54 Y0Q C8 H44 SING N N 55 Y0Q C8 H45 SING N N 56 Y0Q N23 H51 SING N N 57 Y0Q C29 H52 SING N N 58 Y0Q C32 H53 SING N N 59 Y0Q C35 H54 SING N N 60 Y0Q C35 H55 SING N N 61 Y0Q C36 H56 SING N N 62 Y0Q C38 H58 SING N N 63 Y0Q C38 H57 SING N N 64 Y0Q C39 H59 SING N N 65 Y0Q C39 H60 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y0Q SMILES ACDLabs 12.01 "Clc1cnc(cc1OCC1CC1)C(=O)N1CC2C3CN(CC3C2C1)C(=O)c1cc2nn[NH]c2cc1" Y0Q InChI InChI 1.06 "InChI=1S/C25H25ClN6O3/c26-19-7-27-22(6-23(19)35-12-13-1-2-13)25(34)32-10-17-15-8-31(9-16(15)18(17)11-32)24(33)14-3-4-20-21(5-14)29-30-28-20/h3-7,13,15-18H,1-2,8-12H2,(H,28,29,30)" Y0Q InChIKey InChI 1.06 ZWVQJXMQLPTWPF-UHFFFAOYSA-N Y0Q SMILES_CANONICAL CACTVS 3.385 "Clc1cnc(cc1OCC2CC2)C(=O)N3C[C@H]4[C@@H]5CN(C[C@@H]5[C@H]4C3)C(=O)c6ccc7[nH]nnc7c6" Y0Q SMILES CACTVS 3.385 "Clc1cnc(cc1OCC2CC2)C(=O)N3C[CH]4[CH]5CN(C[CH]5[CH]4C3)C(=O)c6ccc7[nH]nnc7c6" Y0Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@@H]4[C@H](C3)[C@@H]5[C@H]4CN(C5)C(=O)c6cc(c(cn6)Cl)OCC7CC7)nn[nH]2" Y0Q SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4C(C3)C5C4CN(C5)C(=O)c6cc(c(cn6)Cl)OCC7CC7)nn[nH]2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y0Q "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,3bR,6aR,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][5-chloro-4-(cyclopropylmethoxy)pyridin-2-yl]methanone" Y0Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzotriazol-5-yl-[(1~{S},2~{R},6~{S},7~{R})-9-[5-chloranyl-4-(cyclopropylmethoxy)pyridin-2-yl]carbonyl-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y0Q "Create component" 2023-06-09 RCSB Y0Q "Initial release" 2024-12-18 RCSB #