data_Y1F # _chem_comp.id Y1F _chem_comp.name "[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridin-4-yl}methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H36 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-09 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 544.645 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y1F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G7F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y1F C10 C1 C 0 1 N N N N N N -13.100 13.083 51.246 -3.560 1.046 0.064 C10 Y1F 1 Y1F C13 C2 C 0 1 N N N N N N -14.082 8.830 47.309 1.759 3.164 0.036 C13 Y1F 2 Y1F C16 C3 C 0 1 Y N N N N N -12.702 9.413 45.332 4.259 3.010 0.111 C16 Y1F 3 Y1F C17 C4 C 0 1 Y N N N N N -11.995 9.058 44.215 5.406 2.243 0.083 C17 Y1F 4 Y1F C19 C5 C 0 1 Y N N N N N -12.313 6.802 44.665 4.190 0.294 -0.146 C19 Y1F 5 Y1F C20 C6 C 0 1 Y N N N N N -13.053 7.008 45.842 2.988 0.989 -0.116 C20 Y1F 6 Y1F C21 C7 C 0 1 N N N N N N -11.489 10.075 43.238 6.751 2.914 0.197 C21 Y1F 7 Y1F C22 C8 C 0 1 N N N N N N -10.174 9.830 42.476 7.380 3.460 -1.087 C22 Y1F 8 Y1F C23 C9 C 0 1 N N N N N N -11.505 9.813 41.706 6.810 4.424 -0.044 C23 Y1F 9 Y1F C25 C10 C 0 1 N N N N N N -11.423 5.208 43.108 5.448 -1.716 -0.292 C25 Y1F 10 Y1F C26 C11 C 0 1 N N N N N N -11.389 3.673 43.019 5.237 -3.225 -0.432 C26 Y1F 11 Y1F C27 C12 C 0 1 N N N N N N -10.782 3.343 41.641 6.593 -3.920 -0.584 C27 Y1F 12 Y1F C28 C13 C 0 1 N N N N N N -10.707 1.776 41.509 6.377 -5.435 -0.645 C28 Y1F 13 Y1F C1 C14 C 0 1 N N N N N N -14.560 9.990 49.464 -0.572 3.411 0.603 C1 Y1F 14 Y1F C2 C15 C 0 1 N N N N N N -13.923 10.921 50.556 -1.637 2.600 -0.109 C2 Y1F 15 Y1F N3 N1 N 0 1 N N N N N N -13.578 9.585 48.363 0.667 2.669 0.652 N3 Y1F 16 Y1F C4 C16 C 0 1 N N N N N N -12.117 9.698 48.565 0.759 1.395 1.355 C4 Y1F 17 Y1F C5 C17 C 0 1 N N N N N N -11.606 11.141 48.180 0.102 0.266 0.621 C5 Y1F 18 Y1F C6 C18 C 0 1 N N R N N N -13.337 12.215 50.030 -2.203 1.464 0.686 C6 Y1F 19 Y1F C7 C19 C 0 1 N N S N N N -11.906 12.222 49.275 -1.385 0.194 0.705 C7 Y1F 20 Y1F C8 C20 C 0 1 N N N N N N -10.944 12.038 50.445 -2.008 -0.675 -0.410 C8 Y1F 21 Y1F N9 N2 N 0 1 N N N N N N -11.609 12.877 51.498 -3.458 -0.389 -0.264 N9 Y1F 22 Y1F C14 C21 C 0 1 Y N N N N N -13.240 8.383 46.143 3.015 2.379 0.010 C14 Y1F 23 Y1F O15 O1 O 0 1 N N N N N N -15.245 8.531 47.337 1.713 4.255 -0.497 O15 Y1F 24 Y1F N18 N3 N 0 1 Y N N N N N -11.787 7.781 43.885 5.343 0.932 -0.042 N18 Y1F 25 Y1F O24 O2 O 0 1 N N N N N N -12.157 5.503 44.286 4.180 -1.058 -0.267 O24 Y1F 26 Y1F O29 O3 O 0 1 N N N N N N -9.773 1.341 42.503 5.695 -5.865 0.534 O29 Y1F 27 Y1F C30 C22 C 0 1 N N N N N N -10.159 1.595 43.855 4.401 -5.284 0.705 C30 Y1F 28 Y1F C31 C23 C 0 1 N N N N N N -10.440 3.104 44.104 4.537 -3.763 0.820 C31 Y1F 29 Y1F C32 C24 C 0 1 N N N N N N -11.028 13.400 52.642 -4.475 -1.263 -0.401 C32 Y1F 30 Y1F C33 C25 C 0 1 Y N N N N N -9.647 13.043 53.042 -5.872 -0.788 -0.340 C33 Y1F 31 Y1F O34 O4 O 0 1 N N N N N N -11.654 14.233 53.310 -4.241 -2.444 -0.576 O34 Y1F 32 Y1F C35 C26 C 0 1 Y N N N N N -9.509 11.678 53.341 -6.164 0.557 -0.609 C35 Y1F 33 Y1F C36 C27 C 0 1 Y N N N N N -8.312 11.183 53.770 -7.449 1.009 -0.555 C36 Y1F 34 Y1F C37 C28 C 0 1 Y N N N N N -8.607 14.019 53.151 -6.891 -1.676 -0.021 C37 Y1F 35 Y1F C38 C29 C 0 1 Y N N N N N -7.366 13.494 53.637 -8.211 -1.219 0.035 C38 Y1F 36 Y1F C39 C30 C 0 1 Y N N N N N -7.239 12.096 53.924 -8.484 0.136 -0.232 C39 Y1F 37 Y1F N40 N4 N 0 1 Y N N N N N -5.901 11.911 54.354 -9.843 0.283 -0.100 N40 Y1F 38 Y1F N41 N5 N 0 1 Y N N N N N -5.291 13.115 54.341 -10.352 -0.977 0.247 N41 Y1F 39 Y1F N42 N6 N 0 1 Y N N N N N -6.130 14.071 53.928 -9.389 -1.827 0.311 N42 Y1F 40 Y1F H54 H1 H 0 1 N N N N N N -13.327 14.138 51.034 -4.365 1.208 0.782 H54 Y1F 41 Y1F H53 H2 H 0 1 N N N N N N -13.701 12.743 52.103 -3.749 1.623 -0.842 H53 Y1F 42 Y1F H55 H3 H 0 1 N N N N N N -12.846 10.452 45.589 4.321 4.084 0.214 H55 Y1F 43 Y1F H56 H4 H 0 1 N N N N N N -13.439 6.205 46.453 2.048 0.462 -0.189 H56 Y1F 44 Y1F H57 H5 H 0 1 N N N N N N -11.665 11.124 43.519 7.422 2.497 0.948 H57 Y1F 45 Y1F H58 H6 H 0 1 N N N N N N -9.465 10.657 42.326 8.464 3.402 -1.180 H58 Y1F 46 Y1F H59 H7 H 0 1 N N N N N N -9.618 8.894 42.630 6.820 3.334 -2.014 H59 Y1F 47 Y1F H61 H8 H 0 1 N N N N N N -11.902 8.865 41.313 5.877 4.932 -0.285 H61 Y1F 48 Y1F H60 H9 H 0 1 N N N N N N -11.749 10.629 41.010 7.520 5.001 0.549 H60 Y1F 49 Y1F H63 H10 H 0 1 N N N N N N -11.924 5.633 42.226 5.983 -1.509 0.635 H63 Y1F 50 Y1F H62 H11 H 0 1 N N N N N N -10.402 5.612 43.180 6.031 -1.351 -1.137 H62 Y1F 51 Y1F H64 H12 H 0 1 N N N N N N -12.399 3.248 43.118 4.623 -3.427 -1.310 H64 Y1F 52 Y1F H66 H13 H 0 1 N N N N N N -11.418 3.755 40.844 7.074 -3.584 -1.503 H66 Y1F 53 Y1F H65 H14 H 0 1 N N N N N N -9.773 3.773 41.564 7.225 -3.677 0.269 H65 Y1F 54 Y1F H67 H15 H 0 1 N N N N N N -11.695 1.329 41.692 5.779 -5.682 -1.522 H67 Y1F 55 Y1F H68 H16 H 0 1 N N N N N N -10.357 1.493 40.505 7.343 -5.937 -0.710 H68 Y1F 56 Y1F H43 H17 H 0 1 N N N N N N -14.928 9.078 49.956 -0.412 4.346 0.067 H43 Y1F 57 Y1F H44 H18 H 0 1 N N N N N N -15.403 10.523 49.000 -0.902 3.630 1.618 H44 Y1F 58 Y1F H45 H19 H 0 1 N N N N N N -14.704 11.173 51.288 -2.454 3.269 -0.381 H45 Y1F 59 Y1F H46 H20 H 0 1 N N N N N N -13.119 10.361 51.056 -1.208 2.198 -1.026 H46 Y1F 60 Y1F H47 H21 H 0 1 N N N N N N -11.883 9.503 49.622 1.811 1.152 1.502 H47 Y1F 61 Y1F H48 H22 H 0 1 N N N N N N -11.607 8.955 47.934 0.287 1.500 2.332 H48 Y1F 62 Y1F H49 H23 H 0 1 N N N N N N -10.518 11.095 48.024 0.378 0.341 -0.431 H49 Y1F 63 Y1F H50 H24 H 0 1 N N N N N N -12.098 11.447 47.245 0.507 -0.669 1.008 H50 Y1F 64 Y1F H11 H25 H 0 1 N N N N N N -14.070 12.704 49.372 -2.365 1.790 1.713 H11 Y1F 65 Y1F H12 H26 H 0 1 N N N N N N -11.756 13.219 48.836 -1.624 -0.315 1.638 H12 Y1F 66 Y1F H51 H27 H 0 1 N N N N N N -10.877 10.984 50.751 -1.649 -0.364 -1.391 H51 Y1F 67 Y1F H52 H28 H 0 1 N N N N N N -9.939 12.414 50.204 -1.803 -1.732 -0.238 H52 Y1F 68 Y1F H70 H29 H 0 1 N N N N N N -11.071 1.022 44.078 3.776 -5.529 -0.155 H70 Y1F 69 Y1F H69 H30 H 0 1 N N N N N N -9.348 1.269 44.523 3.942 -5.677 1.612 H69 Y1F 70 Y1F H72 H31 H 0 1 N N N N N N -9.489 3.657 44.078 5.128 -3.516 1.702 H72 Y1F 71 Y1F H71 H32 H 0 1 N N N N N N -10.908 3.226 45.092 3.547 -3.314 0.905 H71 Y1F 72 Y1F H73 H33 H 0 1 N N N N N N -10.355 11.016 53.231 -5.365 1.239 -0.860 H73 Y1F 73 Y1F H74 H34 H 0 1 N N N N N N -8.187 10.132 53.985 -7.664 2.046 -0.764 H74 Y1F 74 Y1F H75 H35 H 0 1 N N N N N N -8.745 15.058 52.890 -6.666 -2.712 0.181 H75 Y1F 75 Y1F H76 H36 H 0 1 N N N N N N -5.483 11.042 54.620 -10.351 1.099 -0.223 H76 Y1F 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y1F C1 C2 SING N N 1 Y1F C1 N3 SING N N 2 Y1F C2 C6 SING N N 3 Y1F N3 C4 SING N N 4 Y1F N3 C13 SING N N 5 Y1F C4 C5 SING N N 6 Y1F C5 C7 SING N N 7 Y1F C6 C7 SING N N 8 Y1F C6 C10 SING N N 9 Y1F C7 C8 SING N N 10 Y1F C8 N9 SING N N 11 Y1F N9 C10 SING N N 12 Y1F N9 C32 SING N N 13 Y1F C13 C14 SING N N 14 Y1F C13 O15 DOUB N N 15 Y1F C14 C16 DOUB Y N 16 Y1F C14 C20 SING Y N 17 Y1F C16 C17 SING Y N 18 Y1F C17 N18 DOUB Y N 19 Y1F C17 C21 SING N N 20 Y1F N18 C19 SING Y N 21 Y1F C19 C20 DOUB Y N 22 Y1F C19 O24 SING N N 23 Y1F C21 C22 SING N N 24 Y1F C21 C23 SING N N 25 Y1F C22 C23 SING N N 26 Y1F O24 C25 SING N N 27 Y1F C25 C26 SING N N 28 Y1F C26 C27 SING N N 29 Y1F C26 C31 SING N N 30 Y1F C27 C28 SING N N 31 Y1F C28 O29 SING N N 32 Y1F O29 C30 SING N N 33 Y1F C30 C31 SING N N 34 Y1F C32 C33 SING N N 35 Y1F C32 O34 DOUB N N 36 Y1F C33 C35 DOUB Y N 37 Y1F C33 C37 SING Y N 38 Y1F C35 C36 SING Y N 39 Y1F C36 C39 DOUB Y N 40 Y1F C37 C38 DOUB Y N 41 Y1F C38 C39 SING Y N 42 Y1F C38 N42 SING Y N 43 Y1F C39 N40 SING Y N 44 Y1F N40 N41 SING Y N 45 Y1F N41 N42 DOUB Y N 46 Y1F C10 H54 SING N N 47 Y1F C10 H53 SING N N 48 Y1F C16 H55 SING N N 49 Y1F C20 H56 SING N N 50 Y1F C21 H57 SING N N 51 Y1F C22 H58 SING N N 52 Y1F C22 H59 SING N N 53 Y1F C23 H61 SING N N 54 Y1F C23 H60 SING N N 55 Y1F C25 H63 SING N N 56 Y1F C25 H62 SING N N 57 Y1F C26 H64 SING N N 58 Y1F C27 H66 SING N N 59 Y1F C27 H65 SING N N 60 Y1F C28 H67 SING N N 61 Y1F C28 H68 SING N N 62 Y1F C1 H43 SING N N 63 Y1F C1 H44 SING N N 64 Y1F C2 H45 SING N N 65 Y1F C2 H46 SING N N 66 Y1F C4 H47 SING N N 67 Y1F C4 H48 SING N N 68 Y1F C5 H49 SING N N 69 Y1F C5 H50 SING N N 70 Y1F C6 H11 SING N N 71 Y1F C7 H12 SING N N 72 Y1F C8 H51 SING N N 73 Y1F C8 H52 SING N N 74 Y1F C30 H70 SING N N 75 Y1F C30 H69 SING N N 76 Y1F C31 H72 SING N N 77 Y1F C31 H71 SING N N 78 Y1F C35 H73 SING N N 79 Y1F C36 H74 SING N N 80 Y1F C37 H75 SING N N 81 Y1F N40 H76 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y1F SMILES ACDLabs 12.01 "O=C(c1ccc2[NH]nnc2c1)N1CC2CCN(CCC2C1)C(=O)c1cc(OCC2CCOCC2)nc(c1)C1CC1" Y1F InChI InChI 1.06 "InChI=1S/C30H36N6O4/c37-29(21-3-4-25-27(13-21)33-34-32-25)36-16-22-5-9-35(10-6-23(22)17-36)30(38)24-14-26(20-1-2-20)31-28(15-24)40-18-19-7-11-39-12-8-19/h3-4,13-15,19-20,22-23H,1-2,5-12,16-18H2,(H,32,33,34)" Y1F InChIKey InChI 1.06 OTCUUGJFNKLLBB-UHFFFAOYSA-N Y1F SMILES_CANONICAL CACTVS 3.385 "O=C(N1CC[C@H]2CN(C[C@H]2CC1)C(=O)c3ccc4[nH]nnc4c3)c5cc(OCC6CCOCC6)nc(c5)C7CC7" Y1F SMILES CACTVS 3.385 "O=C(N1CC[CH]2CN(C[CH]2CC1)C(=O)c3ccc4[nH]nnc4c3)c5cc(OCC6CCOCC6)nc(c5)C7CC7" Y1F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@H]4CCN(CC[C@H]4C3)C(=O)c5cc(nc(c5)OCC6CCOCC6)C7CC7)nn[nH]2" Y1F SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4CCN(CCC4C3)C(=O)c5cc(nc(c5)OCC6CCOCC6)C7CC7)nn[nH]2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y1F "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridin-4-yl}methanone" Y1F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},8~{a}~{R})-6-[2-cyclopropyl-6-(oxan-4-ylmethoxy)pyridin-4-yl]carbonyl-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-2-yl]-(1~{H}-benzotriazol-5-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y1F "Create component" 2023-06-09 RCSB Y1F "Initial release" 2024-12-18 RCSB #