data_Y1M # _chem_comp.id Y1M _chem_comp.name "N-[(3,4-dihydro-2H-1lambda~4~-thiophen-5-yl)methyl]-4-(furan-2-carbonyl)piperazine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-26 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.411 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y1M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S8Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y1M N1 N1 N 0 1 N N N -17.593 15.622 26.301 -0.070 -0.689 -0.456 N1 Y1M 1 Y1M C4 C1 C 0 1 N N N -16.870 21.916 25.168 6.970 0.486 0.479 C4 Y1M 2 Y1M C5 C2 C 0 1 N N N -18.088 21.425 25.501 6.273 1.478 -0.493 C5 Y1M 3 Y1M C6 C3 C 0 1 N N N -18.605 15.052 27.208 -1.329 -1.422 -0.651 C6 Y1M 4 Y1M C7 C4 C 0 1 N N N -18.687 13.541 27.035 -2.352 -0.921 0.375 C7 Y1M 5 Y1M C8 C5 C 0 1 N N N -19.991 12.638 25.060 -3.529 1.211 0.129 C8 Y1M 6 Y1M C10 C6 C 0 1 Y N N -22.399 11.865 25.459 -6.013 0.998 -0.264 C10 Y1M 7 Y1M C13 C7 C 0 1 N N N -17.796 13.680 24.827 -1.116 1.281 0.534 C13 Y1M 8 Y1M N N2 N 0 1 N N N -16.136 17.343 25.791 2.248 -0.674 -0.179 N Y1M 9 Y1M C C8 C 0 1 N N N -16.864 16.693 26.717 1.085 -1.352 -0.251 C Y1M 10 Y1M O O1 O 0 1 N N N -16.890 17.058 27.889 1.079 -2.562 -0.131 O Y1M 11 Y1M C1 C9 C 0 1 N N N -15.481 18.595 26.106 3.488 -1.380 0.155 C1 Y1M 12 Y1M C11 C10 C 0 1 Y N N -23.370 12.203 26.416 -6.941 -0.052 -0.176 C11 Y1M 13 Y1M C12 C11 C 0 1 Y N N -22.813 13.054 27.249 -6.261 -1.152 0.218 C12 Y1M 14 Y1M C14 C12 C 0 1 N N N -17.716 15.185 24.905 -0.092 0.780 -0.493 C14 Y1M 15 Y1M C2 C13 C 0 1 N N N -16.327 19.770 25.852 4.634 -0.402 0.170 C2 Y1M 16 Y1M C3 C14 C 0 1 N N N -15.801 21.006 25.348 6.063 -0.754 0.472 C3 Y1M 17 Y1M C9 C15 C 0 1 Y N N -21.278 12.543 25.785 -4.798 0.477 0.079 C9 Y1M 18 Y1M N2 N3 N 0 1 N N N -18.929 13.221 25.625 -2.375 0.548 0.338 N2 Y1M 19 Y1M O1 O2 O 0 1 N N N -19.926 12.213 23.917 -3.519 2.419 -0.020 O1 Y1M 20 Y1M O2 O3 O 0 1 Y N N -21.504 13.289 26.905 -4.971 -0.828 0.374 O2 Y1M 21 Y1M S S1 S 0 1 N N N -18.066 19.826 26.076 4.511 1.128 -0.128 S Y1M 22 Y1M H4 H1 H 0 1 N N N -16.675 22.802 25.790 7.966 0.232 0.116 H4 Y1M 23 Y1M H17 H2 H 0 1 N N N -16.896 22.210 24.108 7.029 0.912 1.481 H17 Y1M 24 Y1M H5 H3 H 0 1 N N N -18.515 22.067 26.285 6.528 2.510 -0.252 H5 Y1M 25 Y1M H18 H4 H 0 1 N N N -18.729 21.461 24.608 6.514 1.247 -1.530 H18 Y1M 26 Y1M H6 H5 H 0 1 N N N -18.330 15.283 28.248 -1.704 -1.242 -1.659 H6 Y1M 27 Y1M H7 H6 H 0 1 N N N -19.585 15.496 26.981 -1.157 -2.488 -0.507 H7 Y1M 28 Y1M H9 H7 H 0 1 N N N -17.740 13.084 27.357 -3.340 -1.309 0.126 H9 Y1M 29 Y1M H8 H8 H 0 1 N N N -19.512 13.146 27.647 -2.065 -1.258 1.372 H8 Y1M 30 Y1M H10 H9 H 0 1 N N N -22.525 11.192 24.623 -6.219 2.018 -0.551 H10 Y1M 31 Y1M H13 H10 H 0 1 N N N -16.867 13.241 25.219 -0.741 1.101 1.542 H13 Y1M 32 Y1M H14 H11 H 0 1 N N N -17.934 13.372 23.780 -1.288 2.348 0.393 H14 Y1M 33 Y1M H H12 H 0 1 N N N -16.046 16.956 24.873 2.264 0.280 -0.349 H Y1M 34 Y1M H1 H13 H 0 1 N N N -15.204 18.587 27.171 3.390 -1.840 1.138 H1 Y1M 35 Y1M H2 H14 H 0 1 N N N -14.572 18.679 25.492 3.679 -2.152 -0.590 H2 Y1M 36 Y1M H11 H15 H 0 1 N N N -24.384 11.833 26.459 -7.999 0.008 -0.383 H11 Y1M 37 Y1M H12 H16 H 0 1 N N N -23.317 13.507 28.090 -6.688 -2.130 0.380 H12 Y1M 38 Y1M H16 H17 H 0 1 N N N -16.838 15.531 24.339 0.895 1.168 -0.243 H16 Y1M 39 Y1M H15 H18 H 0 1 N N N -18.628 15.619 24.469 -0.379 1.117 -1.489 H15 Y1M 40 Y1M H3 H19 H 0 1 N N N -15.079 21.421 26.067 6.424 -1.453 -0.283 H3 Y1M 41 Y1M H19 H20 H 0 1 N N N -15.300 20.829 24.385 6.111 -1.235 1.449 H19 Y1M 42 Y1M H20 H21 H 0 1 N N N -18.446 19.701 27.313 4.343 1.662 1.095 H20 Y1M 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y1M O C DOUB N N 1 Y1M N C SING N N 2 Y1M C1 N SING N N 3 Y1M C2 C1 SING N N 4 Y1M C2 C3 SING N N 5 Y1M C3 C4 SING N N 6 Y1M C4 C5 SING N N 7 Y1M C5 S SING N N 8 Y1M S C2 DOUB N N 9 Y1M C N1 SING N N 10 Y1M N1 C6 SING N N 11 Y1M C6 C7 SING N N 12 Y1M C7 N2 SING N N 13 Y1M N2 C8 SING N N 14 Y1M C8 O1 DOUB N N 15 Y1M C9 C8 SING N N 16 Y1M C9 C10 DOUB Y N 17 Y1M C10 C11 SING Y N 18 Y1M C11 C12 DOUB Y N 19 Y1M C12 O2 SING Y N 20 Y1M O2 C9 SING Y N 21 Y1M C13 N2 SING N N 22 Y1M C14 C13 SING N N 23 Y1M N1 C14 SING N N 24 Y1M C4 H4 SING N N 25 Y1M C4 H17 SING N N 26 Y1M C5 H5 SING N N 27 Y1M C5 H18 SING N N 28 Y1M C6 H6 SING N N 29 Y1M C6 H7 SING N N 30 Y1M C7 H9 SING N N 31 Y1M C7 H8 SING N N 32 Y1M C10 H10 SING N N 33 Y1M C13 H13 SING N N 34 Y1M C13 H14 SING N N 35 Y1M N H SING N N 36 Y1M C1 H1 SING N N 37 Y1M C1 H2 SING N N 38 Y1M C11 H11 SING N N 39 Y1M C12 H12 SING N N 40 Y1M C14 H16 SING N N 41 Y1M C14 H15 SING N N 42 Y1M C3 H3 SING N N 43 Y1M C3 H19 SING N N 44 Y1M S H20 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y1M SMILES ACDLabs 12.01 "N2(CCN(C(=O)c1ccco1)CC2)C(NCC=3CCCS=3)=O" Y1M InChI InChI 1.03 "InChI=1S/C15H21N3O3S/c19-14(13-4-1-9-21-13)17-5-7-18(8-6-17)15(20)16-11-12-3-2-10-22-12/h1,4,9,22H,2-3,5-8,10-11H2,(H,16,20)" Y1M InChIKey InChI 1.03 NPFSQHMDDIVZSU-UHFFFAOYSA-N Y1M SMILES_CANONICAL CACTVS 3.385 "O=C(NCC1=[SH]CCC1)N2CCN(CC2)C(=O)c3occc3" Y1M SMILES CACTVS 3.385 "O=C(NCC1=[SH]CCC1)N2CCN(CC2)C(=O)c3occc3" Y1M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(oc1)C(=O)N2CCN(CC2)C(=O)NCC3=SCCC3" Y1M SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(oc1)C(=O)N2CCN(CC2)C(=O)NCC3=SCCC3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y1M "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(3,4-dihydro-2H-1lambda~4~-thiophen-5-yl)methyl]-4-(furan-2-carbonyl)piperazine-1-carboxamide" Y1M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(3,4-dihydro-2~{H}-thiophen-5-ylmethyl)-4-(furan-2-ylcarbonyl)piperazine-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y1M "Create component" 2021-01-26 RCSB Y1M "Initial release" 2021-02-17 RCSB ##