data_Y1V # _chem_comp.id Y1V _chem_comp.name "(4R)-5-amino-L-leucine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N2 O2" _chem_comp.mon_nstd_parent_comp_id LEU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-27 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.188 _chem_comp.one_letter_code L _chem_comp.three_letter_code Y1V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LIB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y1V C C C 0 1 N N N Y N Y 5.971 17.082 -4.981 -2.200 -0.252 0.033 C Y1V 1 Y1V O O O 0 1 N N N Y N Y 6.993 17.690 -5.323 -3.028 0.628 0.058 O Y1V 2 Y1V CB CB C 0 1 N N N Y N N 5.398 14.766 -5.669 0.119 0.235 0.764 CB Y1V 3 Y1V CG CG C 0 1 N N R Y N N 4.288 13.823 -6.213 1.558 0.430 0.283 CG Y1V 4 Y1V CD CD C 0 1 N N N Y N N 2.998 13.875 -5.393 2.054 -0.858 -0.377 CD Y1V 5 Y1V N NE N 0 1 N N N Y Y N 3.138 13.355 -4.020 3.390 -0.634 -0.945 NE Y1V 6 Y1V CM CM C 0 1 N N N N N N 4.806 12.369 -6.262 2.453 0.770 1.476 CM Y1V 7 Y1V CA CQ C 0 1 N N S Y N N 5.067 16.206 -5.946 -0.801 0.043 -0.443 CQ Y1V 8 Y1V NA NA N 0 1 N N N N N N 5.466 16.606 -7.333 -0.808 1.268 -1.254 NA Y1V 9 Y1V OXT O1 O 0 1 N Y N Y N Y 5.486 17.117 -3.727 -2.525 -1.490 0.436 O1 Y1V 10 Y1V HB3 HB3 H 0 1 N N N Y N N 5.492 14.621 -4.583 0.066 -0.645 1.405 HB3 Y1V 11 Y1V HB2 HB2 H 0 1 N N N Y N N 6.352 14.516 -6.156 -0.198 1.113 1.327 HB2 Y1V 12 Y1V HG2 HG2 H 0 1 N N N Y N N 4.054 14.135 -7.241 1.592 1.245 -0.441 HG2 Y1V 13 Y1V HD2 HD2 H 0 1 N N N Y N N 2.668 14.923 -5.334 2.105 -1.652 0.369 HD2 Y1V 14 Y1V HD3 HD3 H 0 1 N N N Y N N 2.234 13.278 -5.912 1.366 -1.148 -1.170 HD3 Y1V 15 Y1V H H H 0 1 N N N Y Y N 2.259 13.421 -3.547 4.032 -0.302 -0.240 H Y1V 16 Y1V H2 H1 H 0 1 N Y N Y Y N 3.428 12.398 -4.054 3.740 -1.471 -1.386 H1 Y1V 17 Y1V HM11 HM11 H 0 0 N N N N N N 4.014 11.710 -6.648 2.042 1.629 2.006 HM11 Y1V 18 Y1V HM1 HM1 H 0 1 N N N N N N 5.683 12.314 -6.924 2.500 -0.085 2.151 HM1 Y1V 19 Y1V HM2 HM2 H 0 1 N N N N N N 5.090 12.047 -5.249 3.456 1.008 1.122 HM2 Y1V 20 Y1V HA HA H 0 1 N N N Y N N 4.003 16.414 -5.760 -0.440 -0.790 -1.046 HA Y1V 21 Y1V HN1 HN1 H 0 1 N N N N N N 5.232 17.567 -7.484 -1.357 1.145 -2.091 HN1 Y1V 22 Y1V HN3 HN3 H 0 1 N N N N N N 6.452 16.481 -7.445 -1.139 2.056 -0.716 HN3 Y1V 23 Y1V HXT H3 H 0 1 N Y N Y N Y 6.044 17.664 -3.186 -3.434 -1.630 0.737 H3 Y1V 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y1V NA CA SING N N 1 Y1V CM CG SING N N 2 Y1V CG CB SING N N 3 Y1V CG CD SING N N 4 Y1V CA CB SING N N 5 Y1V CA C SING N N 6 Y1V CD N SING N N 7 Y1V O C DOUB N N 8 Y1V C OXT SING N N 9 Y1V CB HB3 SING N N 10 Y1V CB HB2 SING N N 11 Y1V CG HG2 SING N N 12 Y1V CD HD2 SING N N 13 Y1V CD HD3 SING N N 14 Y1V N H SING N N 15 Y1V N H2 SING N N 16 Y1V CM HM11 SING N N 17 Y1V CM HM1 SING N N 18 Y1V CM HM2 SING N N 19 Y1V CA HA SING N N 20 Y1V NA HN1 SING N N 21 Y1V NA HN3 SING N N 22 Y1V OXT HXT SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y1V SMILES ACDLabs 12.01 "C(O)(=O)C(CC(CN)C)N" Y1V InChI InChI 1.03 "InChI=1S/C6H14N2O2/c1-4(3-7)2-5(8)6(9)10/h4-5H,2-3,7-8H2,1H3,(H,9,10)/t4-,5+/m1/s1" Y1V InChIKey InChI 1.03 SKMVYVWGMUZLIX-UHNVWZDZSA-N Y1V SMILES_CANONICAL CACTVS 3.385 "C[C@@H](CN)C[C@H](N)C(O)=O" Y1V SMILES CACTVS 3.385 "C[CH](CN)C[CH](N)C(O)=O" Y1V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C[C@@H](C(=O)O)N)CN" Y1V SMILES "OpenEye OEToolkits" 2.0.7 "CC(CC(C(=O)O)N)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y1V "SYSTEMATIC NAME" ACDLabs 12.01 "(4R)-5-amino-L-leucine" Y1V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},4~{R})-2,5-bis(azanyl)-4-methyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y1V "Create component" 2021-01-27 RCSB Y1V "Initial release" 2021-08-11 RCSB Y1V "Modify backbone" 2023-11-03 PDBE #