data_Y1W # _chem_comp.id Y1W _chem_comp.name "(1S)-2-[(2r,5S)-5-{[(2,3-dihydro-1,4-benzodioxin-6-yl)methyl]amino}-1,3-dioxan-2-yl]-1-(3-fluoro-6-methoxyquinolin-4-yl)ethan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 F N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-26 _chem_comp.pdbx_modified_date 2021-10-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 470.490 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y1W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MVS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y1W C02 C1 C 0 1 Y N N -7.135 -50.968 -29.670 5.537 2.103 0.191 C02 Y1W 1 Y1W C03 C2 C 0 1 Y N N -6.800 -50.465 -28.439 4.806 0.960 0.361 C03 Y1W 2 Y1W C04 C3 C 0 1 N N S -6.476 -48.969 -28.277 3.366 1.020 0.801 C04 Y1W 3 Y1W C06 C4 C 0 1 N N N -7.589 -48.232 -27.522 2.493 1.473 -0.372 C06 Y1W 4 Y1W C07 C5 C 0 1 N N N -7.184 -46.884 -27.098 1.020 1.415 0.036 C07 Y1W 5 Y1W C09 C6 C 0 1 N N N -5.627 -45.355 -28.113 -0.727 -0.107 0.646 C09 Y1W 6 Y1W C10 C7 C 0 1 N N N -5.431 -44.770 -26.766 -1.609 0.462 -0.471 C10 Y1W 7 Y1W C12 C8 C 0 1 N N N -6.055 -42.848 -25.355 -3.910 0.382 -1.219 C12 Y1W 8 Y1W C13 C9 C 0 1 Y N N -6.133 -41.318 -25.478 -5.343 0.345 -0.753 C13 Y1W 9 Y1W C14 C10 C 0 1 Y N N -5.503 -40.660 -26.531 -5.960 -0.869 -0.518 C14 Y1W 10 Y1W C15 C11 C 0 1 Y N N -5.578 -39.234 -26.630 -7.279 -0.907 -0.090 C15 Y1W 11 Y1W C17 C12 C 0 1 N N N -4.658 -37.227 -27.565 -9.074 -2.100 0.913 C17 Y1W 12 Y1W C18 C13 C 0 1 N N N -5.743 -36.447 -26.814 -9.977 -0.970 0.398 C18 Y1W 13 Y1W C20 C14 C 0 1 Y N N -6.259 -38.514 -25.704 -7.976 0.280 0.105 C20 Y1W 14 Y1W C21 C15 C 0 1 Y N N -6.902 -39.194 -24.621 -7.350 1.495 -0.133 C21 Y1W 15 Y1W C22 C16 C 0 1 Y N N -6.830 -40.580 -24.519 -6.035 1.525 -0.556 C22 Y1W 16 Y1W C23 C17 C 0 1 N N N -5.719 -45.719 -25.676 -1.191 1.912 -0.741 C23 Y1W 17 Y1W C25 C18 C 0 1 Y N N -6.747 -51.342 -27.337 5.436 -0.274 0.115 C25 Y1W 18 Y1W C26 C19 C 0 1 Y N N -6.397 -50.873 -26.033 4.747 -1.488 0.268 C26 Y1W 19 Y1W C27 C20 C 0 1 Y N N -6.356 -51.751 -24.952 5.393 -2.665 0.019 C27 Y1W 20 Y1W C29 C21 C 0 1 N N N -6.185 -49.938 -23.401 5.457 -5.039 -0.108 C29 Y1W 21 Y1W C30 C22 C 0 1 Y N N -6.652 -53.102 -25.142 6.731 -2.675 -0.387 C30 Y1W 22 Y1W C31 C23 C 0 1 Y N N -6.992 -53.566 -26.406 7.424 -1.516 -0.544 C31 Y1W 23 Y1W C32 C24 C 0 1 Y N N -7.036 -52.663 -27.514 6.792 -0.284 -0.297 C32 Y1W 24 Y1W C34 C25 C 0 1 Y N N -7.426 -52.328 -29.824 6.869 2.022 -0.217 C34 Y1W 25 Y1W F01 F1 F 0 1 N N N -7.195 -50.157 -30.764 4.970 3.309 0.411 F01 Y1W 26 Y1W N11 N1 N 0 1 N N N -6.315 -43.516 -26.628 -3.017 0.425 -0.054 N11 Y1W 27 Y1W N33 N2 N 0 1 Y N N -7.377 -53.163 -28.761 7.451 0.869 -0.446 N33 Y1W 28 Y1W O05 O1 O 0 1 N N N -6.340 -48.377 -29.536 3.235 1.950 1.878 O05 Y1W 29 Y1W O08 O2 O 0 1 N N N -6.816 -46.078 -28.277 0.647 0.057 0.283 O08 Y1W 30 Y1W O16 O3 O 0 1 N N N -4.918 -38.612 -27.736 -7.876 -2.110 0.129 O16 Y1W 31 Y1W O19 O4 O 0 1 N N N -6.365 -37.109 -25.756 -9.268 0.266 0.533 O19 Y1W 32 Y1W O24 O5 O 0 1 N N N -6.067 -46.988 -26.164 0.212 1.947 -1.017 O24 Y1W 33 Y1W O28 O6 O 0 1 N N N -6.008 -51.303 -23.669 4.728 -3.841 0.168 O28 Y1W 34 Y1W H041 H1 H 0 0 N N N -5.542 -48.874 -27.704 3.045 0.032 1.132 H041 Y1W 35 Y1W H062 H2 H 0 0 N N N -8.465 -48.146 -28.181 2.754 2.495 -0.646 H062 Y1W 36 Y1W H061 H3 H 0 0 N N N -7.857 -48.817 -26.630 2.661 0.815 -1.224 H061 Y1W 37 Y1W H071 H4 H 0 0 N N N -8.032 -46.402 -26.590 0.870 2.003 0.942 H071 Y1W 38 Y1W H091 H5 H 0 0 N N N -4.785 -46.033 -28.317 -0.925 0.428 1.575 H091 Y1W 39 Y1W H092 H6 H 0 0 N N N -5.623 -44.534 -28.845 -0.947 -1.166 0.781 H092 Y1W 40 Y1W H101 H7 H 0 0 N N N -4.383 -44.449 -26.678 -1.480 -0.132 -1.376 H101 Y1W 41 Y1W H121 H8 H 0 0 N N N -6.801 -43.183 -24.620 -3.696 -0.510 -1.809 H121 Y1W 42 Y1W H122 H9 H 0 0 N N N -5.049 -43.125 -25.008 -3.750 1.269 -1.832 H122 Y1W 43 Y1W H141 H10 H 0 0 N N N -4.958 -41.225 -27.273 -5.416 -1.790 -0.669 H141 Y1W 44 Y1W H171 H11 H 0 0 N N N -3.716 -37.124 -27.006 -8.827 -1.924 1.960 H171 Y1W 45 Y1W H172 H12 H 0 0 N N N -4.544 -36.777 -28.562 -9.588 -3.056 0.813 H172 Y1W 46 Y1W H182 H13 H 0 0 N N N -5.280 -35.534 -26.411 -10.220 -1.143 -0.650 H182 Y1W 47 Y1W H181 H14 H 0 0 N N N -6.522 -36.173 -27.541 -10.893 -0.935 0.988 H181 Y1W 48 Y1W H211 H15 H 0 0 N N N -7.446 -38.628 -23.879 -7.890 2.418 0.017 H211 Y1W 49 Y1W H221 H16 H 0 0 N N N -7.314 -41.086 -23.697 -5.548 2.472 -0.737 H221 Y1W 50 Y1W H231 H17 H 0 0 N N N -4.825 -45.815 -25.043 -1.742 2.296 -1.600 H231 Y1W 51 Y1W H232 H18 H 0 0 N N N -6.554 -45.328 -25.076 -1.408 2.523 0.134 H232 Y1W 52 Y1W H261 H19 H 0 0 N N N -6.162 -49.829 -25.884 3.714 -1.491 0.582 H261 Y1W 53 Y1W H291 H20 H 0 0 N N N -5.876 -49.724 -22.367 4.810 -5.902 0.049 H291 Y1W 54 Y1W H292 H21 H 0 0 N N N -5.573 -49.345 -24.097 5.800 -5.025 -1.142 H292 Y1W 55 Y1W H293 H22 H 0 0 N N N -7.245 -49.674 -23.529 6.317 -5.102 0.559 H293 Y1W 56 Y1W H301 H23 H 0 0 N N N -6.617 -53.786 -24.307 7.222 -3.618 -0.578 H301 Y1W 57 Y1W H311 H24 H 0 0 N N N -7.224 -54.611 -26.552 8.458 -1.541 -0.858 H311 Y1W 58 Y1W H341 H25 H 0 0 N N N -7.691 -52.713 -30.797 7.436 2.932 -0.348 H341 Y1W 59 Y1W H111 H26 H 0 0 N N N -6.113 -42.886 -27.378 -3.191 -0.354 0.564 H111 Y1W 60 Y1W H051 H28 H 0 0 N N N -6.140 -47.454 -29.433 3.503 2.851 1.655 H051 Y1W 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y1W F01 C02 SING N N 1 Y1W C34 C02 DOUB Y N 2 Y1W C34 N33 SING Y N 3 Y1W C02 C03 SING Y N 4 Y1W O05 C04 SING N N 5 Y1W N33 C32 DOUB Y N 6 Y1W C03 C04 SING N N 7 Y1W C03 C25 DOUB Y N 8 Y1W C04 C06 SING N N 9 Y1W O08 C09 SING N N 10 Y1W O08 C07 SING N N 11 Y1W C09 C10 SING N N 12 Y1W O16 C17 SING N N 13 Y1W O16 C15 SING N N 14 Y1W C17 C18 SING N N 15 Y1W C06 C07 SING N N 16 Y1W C32 C25 SING Y N 17 Y1W C32 C31 SING Y N 18 Y1W C25 C26 SING Y N 19 Y1W C07 O24 SING N N 20 Y1W C18 O19 SING N N 21 Y1W C10 N11 SING N N 22 Y1W C10 C23 SING N N 23 Y1W C15 C14 DOUB Y N 24 Y1W C15 C20 SING Y N 25 Y1W N11 C12 SING N N 26 Y1W C14 C13 SING Y N 27 Y1W C31 C30 DOUB Y N 28 Y1W O24 C23 SING N N 29 Y1W C26 C27 DOUB Y N 30 Y1W O19 C20 SING N N 31 Y1W C20 C21 DOUB Y N 32 Y1W C13 C12 SING N N 33 Y1W C13 C22 DOUB Y N 34 Y1W C30 C27 SING Y N 35 Y1W C27 O28 SING N N 36 Y1W C21 C22 SING Y N 37 Y1W O28 C29 SING N N 38 Y1W C04 H041 SING N N 39 Y1W C06 H062 SING N N 40 Y1W C06 H061 SING N N 41 Y1W C07 H071 SING N N 42 Y1W C09 H091 SING N N 43 Y1W C09 H092 SING N N 44 Y1W C10 H101 SING N N 45 Y1W C12 H121 SING N N 46 Y1W C12 H122 SING N N 47 Y1W C14 H141 SING N N 48 Y1W C17 H171 SING N N 49 Y1W C17 H172 SING N N 50 Y1W C18 H182 SING N N 51 Y1W C18 H181 SING N N 52 Y1W C21 H211 SING N N 53 Y1W C22 H221 SING N N 54 Y1W C23 H231 SING N N 55 Y1W C23 H232 SING N N 56 Y1W C26 H261 SING N N 57 Y1W C29 H291 SING N N 58 Y1W C29 H292 SING N N 59 Y1W C29 H293 SING N N 60 Y1W C30 H301 SING N N 61 Y1W C31 H311 SING N N 62 Y1W C34 H341 SING N N 63 Y1W N11 H111 SING N N 64 Y1W O05 H051 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y1W SMILES ACDLabs 12.01 "OC(CC1OCC(CO1)NCc1ccc2OCCOc2c1)c1c2cc(OC)ccc2ncc1F" Y1W InChI InChI 1.03 "InChI=1S/C25H27FN2O6/c1-30-17-3-4-20-18(9-17)25(19(26)12-28-20)21(29)10-24-33-13-16(14-34-24)27-11-15-2-5-22-23(8-15)32-7-6-31-22/h2-5,8-9,12,16,21,24,27,29H,6-7,10-11,13-14H2,1H3/t16-,21-,24-/m0/s1" Y1W InChIKey InChI 1.03 OWUGLCKBNARAPP-SWDVRCMSSA-N Y1W SMILES_CANONICAL CACTVS 3.385 "COc1ccc2ncc(F)c([C@@H](O)C[C@@H]3OC[C@H](CO3)NCc4ccc5OCCOc5c4)c2c1" Y1W SMILES CACTVS 3.385 "COc1ccc2ncc(F)c([CH](O)C[CH]3OC[CH](CO3)NCc4ccc5OCCOc5c4)c2c1" Y1W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1)c(c(cn2)F)[C@H](CC3OCC(CO3)NCc4ccc5c(c4)OCCO5)O" Y1W SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1)c(c(cn2)F)C(CC3OCC(CO3)NCc4ccc5c(c4)OCCO5)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y1W "SYSTEMATIC NAME" ACDLabs 12.01 "(1S)-2-[(2r,5S)-5-{[(2,3-dihydro-1,4-benzodioxin-6-yl)methyl]amino}-1,3-dioxan-2-yl]-1-(3-fluoro-6-methoxyquinolin-4-yl)ethan-1-ol" Y1W "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S})-2-[5-(2,3-dihydro-1,4-benzodioxin-6-ylmethylamino)-1,3-dioxan-2-yl]-1-(3-fluoranyl-6-methoxy-quinolin-4-yl)ethanol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y1W "Create component" 2021-05-26 RCSB Y1W "Initial release" 2021-10-20 RCSB ##