data_Y1X # _chem_comp.id Y1X _chem_comp.name "ethyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 Cl F N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-27 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 519.956 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y1X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FM2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y1X C13 C1 C 0 1 N N R -27.661 -1.557 -76.380 -2.255 -1.509 -0.358 C13 Y1X 1 Y1X C17 C2 C 0 1 N N N -25.142 2.105 -75.559 2.425 -0.205 0.154 C17 Y1X 2 Y1X C20 C3 C 0 1 Y N N -23.063 4.642 -77.275 4.790 1.099 -0.754 C20 Y1X 3 Y1X C21 C4 C 0 1 Y N N -22.813 5.996 -77.350 6.002 1.438 -1.324 C21 Y1X 4 Y1X C22 C5 C 0 1 Y N N -23.285 6.797 -76.337 7.179 0.926 -0.805 C22 Y1X 5 Y1X C24 C6 C 0 1 Y N N -23.985 6.229 -75.315 7.145 0.074 0.287 C24 Y1X 6 Y1X C26 C7 C 0 1 Y N N -24.246 4.881 -75.217 5.933 -0.267 0.861 C26 Y1X 7 Y1X C02 C8 C 0 1 N N N -30.102 -1.746 -76.296 -4.446 -0.797 -1.318 C02 Y1X 8 Y1X C04 C9 C 0 1 Y N N -28.633 -2.154 -74.252 -3.182 0.554 0.268 C04 Y1X 9 Y1X C05 C10 C 0 1 Y N N -27.254 -1.987 -74.023 -1.993 0.485 0.975 C05 Y1X 10 Y1X C06 C11 C 0 1 Y N N -26.679 -2.241 -72.792 -1.616 1.515 1.815 C06 Y1X 11 Y1X C07 C12 C 0 1 Y N N -27.489 -2.706 -71.757 -2.426 2.626 1.957 C07 Y1X 12 Y1X C08 C13 C 0 1 Y N N -28.871 -2.909 -71.949 -3.615 2.705 1.255 C08 Y1X 13 Y1X C09 C14 C 0 1 N N N -29.630 -3.436 -70.738 -4.499 3.916 1.408 C09 Y1X 14 Y1X C11 C15 C 0 1 N N N -31.983 -2.831 -70.521 -4.968 6.122 0.527 C11 Y1X 15 Y1X C12 C16 C 0 1 Y N N -29.458 -2.625 -73.210 -3.995 1.680 0.416 C12 Y1X 16 Y1X C14 C17 C 0 1 N N S -26.594 -1.426 -75.336 -1.309 -0.822 0.640 C14 Y1X 17 Y1X C16 C18 C 0 1 N N N -25.353 0.612 -75.743 1.096 -0.460 0.787 C16 Y1X 18 Y1X C19 C19 C 0 1 Y N N -23.738 4.083 -76.196 4.752 0.245 0.341 C19 Y1X 19 Y1X C29 C20 C 0 1 N N N -27.317 -2.704 -77.353 -2.745 -2.844 0.209 C29 Y1X 20 Y1X C31 C21 C 0 1 N N N -25.081 -2.847 -78.542 -1.853 -5.097 0.632 C31 Y1X 21 Y1X C35 C22 C 0 1 N N N -31.249 -1.005 -78.174 -6.497 -0.133 -2.342 C35 Y1X 22 Y1X C36 C23 C 0 1 N N N -31.523 -1.789 -79.463 -7.439 1.071 -2.392 C36 Y1X 23 Y1X F25 F1 F 0 1 N N N -24.443 7.054 -74.351 8.295 -0.424 0.791 F25 Y1X 24 Y1X N03 N1 N 0 1 N N N -28.826 -1.788 -75.626 -3.379 -0.584 -0.522 N03 Y1X 25 Y1X N10 N2 N 0 1 N N N -31.005 -3.775 -71.075 -4.125 4.925 0.407 N10 Y1X 26 Y1X N15 N3 N 0 1 N N N -26.465 -0.048 -75.126 -0.006 -0.572 0.019 N15 Y1X 27 Y1X N18 N4 N 0 1 N N N -23.994 2.666 -76.227 3.527 -0.093 0.922 N18 Y1X 28 Y1X N30 N5 N 0 1 N N N -26.373 -2.207 -78.340 -1.631 -3.794 0.251 N30 Y1X 29 Y1X N32 N6 N 0 1 N N N -24.726 -4.018 -77.755 -0.808 -5.989 0.672 N32 Y1X 30 Y1X N33 N7 N 0 1 N N N -24.253 -2.396 -79.382 -3.055 -5.486 0.954 N33 Y1X 31 Y1X O01 O1 O 0 1 N N N -31.135 -1.837 -75.716 -4.570 -1.858 -1.896 O01 Y1X 32 Y1X O27 O2 O 0 1 N N N -25.888 2.746 -74.883 2.512 -0.098 -1.052 O27 Y1X 33 Y1X O28 O3 O 0 1 N N N -24.614 -0.025 -76.397 1.009 -0.567 1.993 O28 Y1X 34 Y1X O34 O4 O 0 1 N N N -30.080 -1.591 -77.671 -5.375 0.166 -1.471 O34 Y1X 35 Y1X CL23 CL1 CL 0 0 N N N -23.051 8.556 -76.306 8.700 1.353 -1.524 CL23 Y1X 36 Y1X H1 H1 H 0 1 N N N -27.740 -0.618 -76.947 -1.751 -1.665 -1.311 H1 Y1X 37 Y1X H2 H2 H 0 1 N N N -22.726 3.999 -78.075 3.873 1.503 -1.157 H2 Y1X 38 Y1X H3 H3 H 0 1 N N N -22.263 6.415 -78.180 6.031 2.102 -2.175 H3 Y1X 39 Y1X H4 H4 H 0 1 N N N -24.827 4.475 -74.402 5.906 -0.932 1.712 H4 Y1X 40 Y1X H5 H5 H 0 1 N N N -25.622 -2.082 -72.635 -0.687 1.452 2.362 H5 Y1X 41 Y1X H6 H6 H 0 1 N N N -27.051 -2.914 -70.792 -2.131 3.431 2.614 H6 Y1X 42 Y1X H7 H7 H 0 1 N N N -29.122 -4.336 -70.362 -5.540 3.627 1.262 H7 Y1X 43 Y1X H8 H8 H 0 1 N N N -29.634 -2.663 -69.955 -4.374 4.333 2.408 H8 Y1X 44 Y1X H9 H9 H 0 1 N N N -32.998 -3.142 -70.810 -4.846 6.554 1.520 H9 Y1X 45 Y1X H10 H10 H 0 1 N N N -31.902 -2.820 -69.424 -4.670 6.852 -0.226 H10 Y1X 46 Y1X H11 H11 H 0 1 N N N -31.782 -1.823 -70.913 -6.012 5.849 0.375 H11 Y1X 47 Y1X H12 H12 H 0 1 N N N -30.517 -2.767 -73.368 -4.924 1.747 -0.130 H12 Y1X 48 Y1X H13 H13 H 0 1 N N N -25.662 -1.951 -75.593 -1.192 -1.432 1.535 H13 Y1X 49 Y1X H14 H14 H 0 1 N N N -28.232 -3.050 -77.856 -3.131 -2.691 1.216 H14 Y1X 50 Y1X H15 H15 H 0 1 N N N -26.866 -3.539 -76.797 -3.536 -3.240 -0.428 H15 Y1X 51 Y1X H16 H16 H 0 1 N N N -31.091 0.062 -78.390 -7.034 -1.000 -1.958 H16 Y1X 52 Y1X H17 H17 H 0 1 N N N -32.081 -1.116 -77.463 -6.130 -0.349 -3.346 H17 Y1X 53 Y1X H18 H18 H 0 1 N N N -32.434 -1.401 -79.942 -8.282 0.846 -3.046 H18 Y1X 54 Y1X H19 H19 H 0 1 N N N -30.671 -1.675 -80.149 -7.806 1.286 -1.388 H19 Y1X 55 Y1X H20 H20 H 0 1 N N N -31.660 -2.854 -79.222 -6.902 1.937 -2.776 H20 Y1X 56 Y1X H21 H21 H 0 1 N N N -31.097 -3.780 -72.071 -3.147 5.162 0.480 H21 Y1X 57 Y1X H23 H23 H 0 1 N N N -27.123 0.456 -74.567 0.064 -0.486 -0.945 H23 Y1X 58 Y1X H24 H24 H 0 1 N N N -23.366 2.063 -76.719 3.469 -0.248 1.878 H24 Y1X 59 Y1X H25 H25 H 0 1 N N N -26.616 -1.409 -78.892 -0.737 -3.505 0.011 H25 Y1X 60 Y1X H26 H26 H 0 1 N N N -25.368 -4.380 -77.079 0.086 -5.700 0.432 H26 Y1X 61 Y1X H27 H27 H 0 1 N N N -23.840 -4.461 -77.890 -0.965 -6.908 0.940 H27 Y1X 62 Y1X H28 H28 H 0 1 N N N -23.409 -2.932 -79.401 -3.212 -6.405 1.222 H28 Y1X 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y1X C36 C35 SING N N 1 Y1X N33 C31 DOUB N N 2 Y1X C31 N30 SING N N 3 Y1X C31 N32 SING N N 4 Y1X N30 C29 SING N N 5 Y1X C35 O34 SING N N 6 Y1X O34 C02 SING N N 7 Y1X C29 C13 SING N N 8 Y1X C21 C20 DOUB Y N 9 Y1X C21 C22 SING Y N 10 Y1X C20 C19 SING Y N 11 Y1X O28 C16 DOUB N N 12 Y1X C13 N03 SING N N 13 Y1X C13 C14 SING N N 14 Y1X C22 CL23 SING N N 15 Y1X C22 C24 DOUB Y N 16 Y1X C02 O01 DOUB N N 17 Y1X C02 N03 SING N N 18 Y1X N18 C19 SING N N 19 Y1X N18 C17 SING N N 20 Y1X C19 C26 DOUB Y N 21 Y1X C16 C17 SING N N 22 Y1X C16 N15 SING N N 23 Y1X N03 C04 SING N N 24 Y1X C17 O27 DOUB N N 25 Y1X C14 N15 SING N N 26 Y1X C14 C05 SING N N 27 Y1X C24 C26 SING Y N 28 Y1X C24 F25 SING N N 29 Y1X C04 C05 DOUB Y N 30 Y1X C04 C12 SING Y N 31 Y1X C05 C06 SING Y N 32 Y1X C12 C08 DOUB Y N 33 Y1X C06 C07 DOUB Y N 34 Y1X C08 C07 SING Y N 35 Y1X C08 C09 SING N N 36 Y1X N10 C09 SING N N 37 Y1X N10 C11 SING N N 38 Y1X C13 H1 SING N N 39 Y1X C20 H2 SING N N 40 Y1X C21 H3 SING N N 41 Y1X C26 H4 SING N N 42 Y1X C06 H5 SING N N 43 Y1X C07 H6 SING N N 44 Y1X C09 H7 SING N N 45 Y1X C09 H8 SING N N 46 Y1X C11 H9 SING N N 47 Y1X C11 H10 SING N N 48 Y1X C11 H11 SING N N 49 Y1X C12 H12 SING N N 50 Y1X C14 H13 SING N N 51 Y1X C29 H14 SING N N 52 Y1X C29 H15 SING N N 53 Y1X C35 H16 SING N N 54 Y1X C35 H17 SING N N 55 Y1X C36 H18 SING N N 56 Y1X C36 H19 SING N N 57 Y1X C36 H20 SING N N 58 Y1X N10 H21 SING N N 59 Y1X N15 H23 SING N N 60 Y1X N18 H24 SING N N 61 Y1X N30 H25 SING N N 62 Y1X N32 H26 SING N N 63 Y1X N32 H27 SING N N 64 Y1X N33 H28 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y1X SMILES ACDLabs 12.01 "Clc1ccc(cc1F)NC(=O)C(=O)NC1c2ccc(cc2N(C1CNC(=N)N)C(=O)OCC)CNC" Y1X InChI InChI 1.06 "InChI=1S/C23H27ClFN7O4/c1-3-36-23(35)32-17-8-12(10-28-2)4-6-14(17)19(18(32)11-29-22(26)27)31-21(34)20(33)30-13-5-7-15(24)16(25)9-13/h4-9,18-19,28H,3,10-11H2,1-2H3,(H,30,33)(H,31,34)(H4,26,27,29)/t18-,19+/m1/s1" Y1X InChIKey InChI 1.06 XKEOWEYHUQNCGZ-MOPGFXCFSA-N Y1X SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)N1[C@H](CNC(N)=N)[C@@H](NC(=O)C(=O)Nc2ccc(Cl)c(F)c2)c3ccc(CNC)cc13" Y1X SMILES CACTVS 3.385 "CCOC(=O)N1[CH](CNC(N)=N)[CH](NC(=O)C(=O)Nc2ccc(Cl)c(F)c2)c3ccc(CNC)cc13" Y1X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@@H]1[C@H](c2ccc(cc2N1C(=O)OCC)CNC)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl" Y1X SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)N1c2cc(ccc2C(C1CNC(=N)N)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CNC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y1X "SYSTEMATIC NAME" ACDLabs 12.01 "ethyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate" Y1X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "ethyl (2~{R},3~{S})-2-(carbamimidamidomethyl)-3-[[2-[(4-chloranyl-3-fluoranyl-phenyl)amino]-2-oxidanylidene-ethanoyl]amino]-6-(methylaminomethyl)-2,3-dihydroindole-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y1X "Create component" 2022-12-27 RCSB Y1X "Initial release" 2023-04-05 RCSB #