data_Y24 # _chem_comp.id Y24 _chem_comp.name "1,1',1'',1''',1''''-[(3R,5S,7S,9R)-decane-1,3,5,7,9-pentayl]penta(pyrrolidin-2-one)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H47 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-27 _chem_comp.pdbx_modified_date 2021-02-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 557.725 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y24 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6V9E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y24 C11 C1 C 0 1 N N N 31.665 48.617 -11.386 6.082 -0.417 -2.155 C11 Y24 1 Y24 C01 C2 C 0 1 N N R 31.079 48.200 -10.033 4.988 -0.372 -1.087 C01 Y24 2 Y24 C02 C3 C 0 1 N N N 30.551 46.752 -10.063 3.622 -0.226 -1.762 C02 Y24 3 Y24 C03 C4 C 0 1 N N S 30.190 46.275 -11.477 2.519 -0.306 -0.704 C03 Y24 4 Y24 C04 C5 C 0 1 N N N 30.221 44.734 -11.545 1.163 -0.036 -1.360 C04 Y24 5 Y24 C05 C6 C 0 1 N N S 31.340 44.068 -12.399 0.077 0.007 -0.284 C05 Y24 6 Y24 C06 C7 C 0 1 N N N 32.399 43.348 -11.534 -1.294 0.153 -0.949 C06 Y24 7 Y24 C07 C8 C 0 1 N N R 32.555 41.847 -11.875 -2.389 0.071 0.116 C07 Y24 8 Y24 C08 C9 C 0 1 N N N 32.196 41.600 -13.352 -3.750 0.341 -0.529 C08 Y24 9 Y24 C09 C10 C 0 1 N N N 33.092 40.566 -14.035 -4.829 0.382 0.555 C09 Y24 10 Y24 C22 C11 C 0 1 N N N 29.329 50.059 -10.541 5.441 0.661 1.248 C22 Y24 11 Y24 C23 C12 C 0 1 N N N 29.554 49.351 -8.286 5.253 2.051 -0.604 C23 Y24 12 Y24 C24 C13 C 0 1 N N N 28.482 50.433 -8.314 5.503 2.963 0.577 C24 Y24 13 Y24 C25 C14 C 0 1 N N N 28.674 51.113 -9.653 5.199 2.080 1.809 C25 Y24 14 Y24 C26 C15 C 0 1 N N N 27.599 46.501 -11.046 2.727 -1.915 1.321 C26 Y24 15 Y24 C27 C16 C 0 1 N N N 26.482 46.924 -12.012 3.068 -3.419 1.410 C27 Y24 16 Y24 C28 C17 C 0 1 N N N 27.057 48.049 -12.797 2.384 -3.973 0.138 C28 Y24 17 Y24 C29 C18 C 0 1 N N N 28.530 47.755 -12.844 2.313 -2.783 -0.793 C29 Y24 18 Y24 C30 C19 C 0 1 N N N 33.141 45.877 -13.086 0.352 2.429 0.198 C30 Y24 19 Y24 C31 C20 C 0 1 N N N 33.485 46.585 -14.385 0.626 3.340 1.375 C31 Y24 20 Y24 C32 C21 C 0 1 N N N 32.254 46.417 -15.233 1.163 2.391 2.471 C32 Y24 21 Y24 C33 C22 C 0 1 N N N 31.665 45.084 -14.770 0.546 1.039 2.049 C33 Y24 22 Y24 C34 C23 C 0 1 N N N 34.046 40.134 -10.616 -2.166 -1.539 2.139 C34 Y24 23 Y24 C35 C24 C 0 1 N N N 35.472 39.627 -10.856 -1.823 -3.043 2.225 C35 Y24 24 Y24 C36 C25 C 0 1 N N N 36.237 40.898 -11.204 -2.515 -3.596 0.958 C36 Y24 25 Y24 C37 C26 C 0 1 N N N 35.185 41.792 -11.845 -2.594 -2.406 0.028 C37 Y24 26 Y24 C38 C27 C 0 1 N N N 32.654 38.343 -15.256 -7.043 -0.405 -0.542 C38 Y24 27 Y24 C39 C28 C 0 1 N N N 31.758 38.499 -13.055 -6.646 1.866 -0.265 C39 Y24 28 Y24 C40 C29 C 0 1 N N N 31.415 37.120 -13.625 -7.999 1.759 -0.932 C40 Y24 29 Y24 C41 C30 C 0 1 N N N 32.445 36.931 -14.725 -8.040 0.313 -1.478 C41 Y24 30 Y24 N03 N1 N 0 1 N N N 30.044 49.147 -9.645 5.218 0.769 -0.199 N03 Y24 31 Y24 N04 N2 N 0 1 N N N 28.863 46.804 -11.776 2.514 -1.643 -0.105 N04 Y24 32 Y24 N05 N3 N 0 1 N N N 32.007 44.969 -13.344 0.313 1.148 0.604 N05 Y24 33 Y24 N06 N4 N 0 1 N N N 33.865 41.298 -11.484 -2.389 -1.266 0.715 N06 Y24 34 Y24 N07 N5 N 0 1 N N N 32.522 39.221 -14.092 -6.132 0.640 -0.063 N07 Y24 35 Y24 O02 O1 O 0 1 N N N 29.926 48.773 -7.324 5.106 2.421 -1.749 O02 Y24 36 Y24 O03 O2 O 0 1 N N N 29.303 48.221 -13.617 2.106 -2.846 -1.986 O03 Y24 37 Y24 O04 O3 O 0 1 N N N 33.694 46.056 -12.050 0.186 2.802 -0.945 O04 Y24 38 Y24 O06 O4 O 0 1 N N N 35.413 42.723 -12.545 -2.809 -2.469 -1.164 O06 Y24 39 Y24 O07 O5 O 0 1 N N N 31.445 38.872 -11.971 -6.103 2.906 0.043 O07 Y24 40 Y24 H1 H1 H 0 1 N N N 32.030 49.653 -11.325 7.055 -0.521 -1.675 H1 Y24 41 Y24 H2 H2 H 0 1 N N N 32.500 47.949 -11.645 5.910 -1.266 -2.816 H2 Y24 42 Y24 H3 H3 H 0 1 N N N 30.886 48.548 -12.160 6.061 0.505 -2.736 H3 Y24 43 Y24 H4 H4 H 0 1 N N N 31.890 48.242 -9.291 5.009 -1.295 -0.507 H4 Y24 44 Y24 H5 H5 H 0 1 N N N 29.651 46.694 -9.433 3.569 0.737 -2.269 H5 Y24 45 Y24 H6 H6 H 0 1 N N N 31.327 46.087 -9.656 3.488 -1.027 -2.489 H6 Y24 46 Y24 H7 H7 H 0 1 N N N 30.925 46.678 -12.189 2.704 0.438 0.070 H7 Y24 47 Y24 H8 H8 H 0 1 N N N 29.255 44.404 -11.955 1.196 0.921 -1.881 H8 Y24 48 Y24 H9 H9 H 0 1 N N N 30.329 44.362 -10.515 0.939 -0.830 -2.072 H9 Y24 49 Y24 H10 H10 H 0 1 N N N 30.845 43.285 -12.993 0.103 -0.915 0.296 H10 Y24 50 Y24 H11 H11 H 0 1 N N N 33.369 43.843 -11.687 -1.351 1.117 -1.455 H11 Y24 51 Y24 H12 H12 H 0 1 N N N 32.105 43.437 -10.478 -1.432 -0.648 -1.675 H12 Y24 52 Y24 H13 H13 H 0 1 N N N 31.795 41.318 -11.281 -2.200 0.815 0.890 H13 Y24 53 Y24 H14 H14 H 0 1 N N N 32.286 42.552 -13.896 -3.721 1.298 -1.050 H14 Y24 54 Y24 H15 H15 H 0 1 N N N 31.156 41.246 -13.403 -3.978 -0.453 -1.240 H15 Y24 55 Y24 H16 H16 H 0 1 N N N 34.042 40.515 -13.483 -4.857 -0.575 1.076 H16 Y24 56 Y24 H17 H17 H 0 1 N N N 33.284 40.903 -15.064 -4.600 1.176 1.265 H17 Y24 57 Y24 H18 H18 H 0 1 N N N 28.563 49.511 -11.109 6.465 0.345 1.449 H18 Y24 58 Y24 H19 H19 H 0 1 N N N 30.033 50.535 -11.240 4.735 -0.044 1.687 H19 Y24 59 Y24 H20 H20 H 0 1 N N N 28.627 51.147 -7.490 6.542 3.293 0.591 H20 Y24 60 Y24 H21 H21 H 0 1 N N N 27.478 49.989 -8.242 4.832 3.821 0.545 H21 Y24 61 Y24 H22 H22 H 0 1 N N N 29.327 51.992 -9.550 4.165 2.201 2.130 H22 Y24 62 Y24 H23 H23 H 0 1 N N N 27.705 51.423 -10.072 5.888 2.299 2.625 H23 Y24 63 Y24 H24 H24 H 0 1 N N N 27.543 47.078 -10.111 1.819 -1.700 1.885 H24 Y24 64 Y24 H25 H25 H 0 1 N N N 27.530 45.427 -10.819 3.556 -1.317 1.700 H25 Y24 65 Y24 H26 H26 H 0 1 N N N 25.594 47.256 -11.454 4.146 -3.577 1.374 H26 Y24 66 Y24 H27 H27 H 0 1 N N N 26.208 46.090 -12.675 2.640 -3.864 2.309 H27 Y24 67 Y24 H28 H28 H 0 1 N N N 26.867 49.010 -12.297 2.986 -4.767 -0.303 H28 Y24 68 Y24 H29 H29 H 0 1 N N N 26.632 48.073 -13.811 1.384 -4.338 0.371 H29 Y24 69 Y24 H30 H30 H 0 1 N N N 34.357 46.117 -14.866 1.377 4.085 1.113 H30 Y24 70 Y24 H31 H31 H 0 1 N N N 33.693 47.650 -14.206 -0.294 3.824 1.704 H31 Y24 71 Y24 H32 H32 H 0 1 N N N 32.517 46.379 -16.300 2.252 2.348 2.445 H32 Y24 72 Y24 H33 H33 H 0 1 N N N 31.544 47.239 -15.059 0.810 2.690 3.458 H33 Y24 73 Y24 H34 H34 H 0 1 N N N 30.573 45.081 -14.904 1.239 0.226 2.261 H34 Y24 74 Y24 H35 H35 H 0 1 N N N 32.107 44.252 -15.338 -0.398 0.877 2.568 H35 Y24 75 Y24 H36 H36 H 0 1 N N N 33.918 40.423 -9.562 -3.070 -1.326 2.710 H36 Y24 76 Y24 H37 H37 H 0 1 N N N 33.317 39.352 -10.873 -1.335 -0.941 2.513 H37 Y24 77 Y24 H38 H38 H 0 1 N N N 35.501 38.908 -11.688 -0.745 -3.200 2.181 H38 Y24 78 Y24 H39 H39 H 0 1 N N N 35.881 39.155 -9.950 -2.243 -3.489 3.126 H39 Y24 79 Y24 H40 H40 H 0 1 N N N 37.052 40.683 -11.911 -1.916 -4.390 0.512 H40 Y24 80 Y24 H41 H41 H 0 1 N N N 36.650 41.367 -10.299 -3.513 -3.963 1.197 H41 Y24 81 Y24 H42 H42 H 0 1 N N N 33.655 38.442 -15.701 -7.573 -0.857 0.297 H42 Y24 82 Y24 H43 H43 H 0 1 N N N 31.891 38.587 -16.010 -6.489 -1.166 -1.093 H43 Y24 83 Y24 H44 H44 H 0 1 N N N 30.394 37.106 -14.034 -8.797 1.914 -0.205 H44 Y24 84 Y24 H45 H45 H 0 1 N N N 31.513 36.340 -12.855 -8.082 2.479 -1.746 H45 Y24 85 Y24 H46 H46 H 0 1 N N N 32.062 36.266 -15.513 -7.698 0.278 -2.513 H46 Y24 86 Y24 H47 H47 H 0 1 N N N 33.382 36.519 -14.321 -9.039 -0.112 -1.385 H47 Y24 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y24 C38 C41 SING N N 1 Y24 C38 N07 SING N N 2 Y24 C32 C33 SING N N 3 Y24 C32 C31 SING N N 4 Y24 C33 N05 SING N N 5 Y24 C41 C40 SING N N 6 Y24 C31 C30 SING N N 7 Y24 N07 C09 SING N N 8 Y24 N07 C39 SING N N 9 Y24 C09 C08 SING N N 10 Y24 C40 C39 SING N N 11 Y24 O03 C29 DOUB N N 12 Y24 C08 C07 SING N N 13 Y24 N05 C30 SING N N 14 Y24 N05 C05 SING N N 15 Y24 C30 O04 DOUB N N 16 Y24 C39 O07 DOUB N N 17 Y24 C29 C28 SING N N 18 Y24 C29 N04 SING N N 19 Y24 C28 C27 SING N N 20 Y24 O06 C37 DOUB N N 21 Y24 C05 C04 SING N N 22 Y24 C05 C06 SING N N 23 Y24 C27 C26 SING N N 24 Y24 C07 C06 SING N N 25 Y24 C07 N06 SING N N 26 Y24 C37 N06 SING N N 27 Y24 C37 C36 SING N N 28 Y24 N04 C03 SING N N 29 Y24 N04 C26 SING N N 30 Y24 C04 C03 SING N N 31 Y24 N06 C34 SING N N 32 Y24 C03 C02 SING N N 33 Y24 C11 C01 SING N N 34 Y24 C36 C35 SING N N 35 Y24 C35 C34 SING N N 36 Y24 C22 C25 SING N N 37 Y24 C22 N03 SING N N 38 Y24 C02 C01 SING N N 39 Y24 C01 N03 SING N N 40 Y24 C25 C24 SING N N 41 Y24 N03 C23 SING N N 42 Y24 C24 C23 SING N N 43 Y24 C23 O02 DOUB N N 44 Y24 C11 H1 SING N N 45 Y24 C11 H2 SING N N 46 Y24 C11 H3 SING N N 47 Y24 C01 H4 SING N N 48 Y24 C02 H5 SING N N 49 Y24 C02 H6 SING N N 50 Y24 C03 H7 SING N N 51 Y24 C04 H8 SING N N 52 Y24 C04 H9 SING N N 53 Y24 C05 H10 SING N N 54 Y24 C06 H11 SING N N 55 Y24 C06 H12 SING N N 56 Y24 C07 H13 SING N N 57 Y24 C08 H14 SING N N 58 Y24 C08 H15 SING N N 59 Y24 C09 H16 SING N N 60 Y24 C09 H17 SING N N 61 Y24 C22 H18 SING N N 62 Y24 C22 H19 SING N N 63 Y24 C24 H20 SING N N 64 Y24 C24 H21 SING N N 65 Y24 C25 H22 SING N N 66 Y24 C25 H23 SING N N 67 Y24 C26 H24 SING N N 68 Y24 C26 H25 SING N N 69 Y24 C27 H26 SING N N 70 Y24 C27 H27 SING N N 71 Y24 C28 H28 SING N N 72 Y24 C28 H29 SING N N 73 Y24 C31 H30 SING N N 74 Y24 C31 H31 SING N N 75 Y24 C32 H32 SING N N 76 Y24 C32 H33 SING N N 77 Y24 C33 H34 SING N N 78 Y24 C33 H35 SING N N 79 Y24 C34 H36 SING N N 80 Y24 C34 H37 SING N N 81 Y24 C35 H38 SING N N 82 Y24 C35 H39 SING N N 83 Y24 C36 H40 SING N N 84 Y24 C36 H41 SING N N 85 Y24 C38 H42 SING N N 86 Y24 C38 H43 SING N N 87 Y24 C40 H44 SING N N 88 Y24 C40 H45 SING N N 89 Y24 C41 H46 SING N N 90 Y24 C41 H47 SING N N 91 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y24 SMILES ACDLabs 12.01 "CC(N1CCCC1=O)CC(CC(CC(N2CCCC2=O)CCN3CCCC3=O)N4C(=O)CCC4)N5CCCC5=O" Y24 InChI InChI 1.03 "InChI=1S/C30H47N5O5/c1-22(32-14-3-8-27(32)37)19-24(34-16-5-10-29(34)39)21-25(35-17-6-11-30(35)40)20-23(33-15-4-9-28(33)38)12-18-31-13-2-7-26(31)36/h22-25H,2-21H2,1H3/t22-,23-,24+,25+/m1/s1" Y24 InChIKey InChI 1.03 NCEAZVHIMHJKAN-NGSHPTGOSA-N Y24 SMILES_CANONICAL CACTVS 3.385 "C[C@H](C[C@@H](C[C@H](C[C@@H](CCN1CCCC1=O)N2CCCC2=O)N3CCCC3=O)N4CCCC4=O)N5CCCC5=O" Y24 SMILES CACTVS 3.385 "C[CH](C[CH](C[CH](C[CH](CCN1CCCC1=O)N2CCCC2=O)N3CCCC3=O)N4CCCC4=O)N5CCCC5=O" Y24 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C[C@@H](C[C@H](C[C@@H](CCN1CCCC1=O)N2CCCC2=O)N3CCCC3=O)N4CCCC4=O)N5CCCC5=O" Y24 SMILES "OpenEye OEToolkits" 2.0.7 "CC(CC(CC(CC(CCN1CCCC1=O)N2CCCC2=O)N3CCCC3=O)N4CCCC4=O)N5CCCC5=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y24 "SYSTEMATIC NAME" ACDLabs 12.01 "1,1',1'',1''',1''''-[(3R,5S,7S,9R)-decane-1,3,5,7,9-pentayl]penta(pyrrolidin-2-one)" Y24 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{R},5~{S},7~{S},9~{R})-3,5,7,9-tetrakis(2-oxidanylidenepyrrolidin-1-yl)decyl]pyrrolidin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y24 "Create component" 2021-01-27 RCSB Y24 "Initial release" 2021-02-10 RCSB ##