data_Y28 # _chem_comp.id Y28 _chem_comp.name "O-benzyl-N-(carboxycarbonyl)-D-tyrosine" _chem_comp.type "D-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C18 H17 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2R)-2-(carboxycarbonylamino)-3-(4-phenylmethoxyphenyl)propanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-10-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 343.331 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y28 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2WWJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y28 CAD CAD C 0 1 Y N N -48.998 -57.562 7.024 -5.966 -0.601 0.752 CAD Y28 1 Y28 CAF CAF C 0 1 Y N N -48.999 -58.910 7.400 -7.292 -0.425 0.402 CAF Y28 2 Y28 CAH CAH C 0 1 Y N N -48.357 -59.326 8.571 -7.650 0.602 -0.452 CAH Y28 3 Y28 CAG CAG C 0 1 Y N N -47.707 -58.376 9.360 -6.683 1.452 -0.955 CAG Y28 4 Y28 CAE CAE C 0 1 Y N N -47.706 -57.024 8.980 -5.358 1.276 -0.604 CAE Y28 5 Y28 CAB CAB C 0 1 Y N N -48.347 -56.611 7.808 -4.999 0.249 0.249 CAB Y28 6 Y28 CAC CAC C 0 1 N N N -48.347 -55.258 7.411 -3.554 0.057 0.631 CAC Y28 7 Y28 OH OH O 0 1 N N N -47.086 -54.515 7.296 -2.927 -0.823 -0.305 OH Y28 8 Y28 CZ CZ C 0 1 Y N N -46.258 -54.948 6.255 -1.612 -1.103 -0.102 CZ Y28 9 Y28 CE2 CE2 C 0 1 Y N N -46.821 -55.361 5.045 -0.941 -1.949 -0.972 CE2 Y28 10 Y28 CD2 CD2 C 0 1 Y N N -46.005 -55.772 3.980 0.396 -2.232 -0.765 CD2 Y28 11 Y28 CE1 CE1 C 0 1 Y N N -44.846 -54.976 6.350 -0.939 -0.538 0.971 CE1 Y28 12 Y28 CD1 CD1 C 0 1 Y N N -44.021 -55.391 5.280 0.398 -0.823 1.174 CD1 Y28 13 Y28 CG CG C 0 1 Y N N -44.609 -55.795 4.071 1.063 -1.672 0.309 CG Y28 14 Y28 CB CB C 0 1 N N N -43.784 -56.275 2.845 2.521 -1.983 0.533 CB Y28 15 Y28 CA CA C 0 1 N N R -43.423 -55.098 1.872 3.381 -0.958 -0.209 CA Y28 16 Y28 C C C 0 1 N N N -44.484 -54.863 0.786 4.834 -1.339 -0.086 C Y28 17 Y28 OXT OXT O 0 1 N Y N -45.633 -54.575 1.149 5.260 -2.521 -0.558 OXT Y28 18 Y28 O O O 0 1 N N N -44.141 -54.943 -0.390 5.615 -0.580 0.436 O Y28 19 Y28 N N N 0 1 N N N -42.109 -55.372 1.270 3.173 0.369 0.377 N Y28 20 Y28 CAR CAR C 0 1 N N N -41.039 -55.211 2.039 3.391 1.474 -0.364 CAR Y28 21 Y28 OAW OAW O 0 1 N N N -41.154 -54.764 3.189 3.760 1.370 -1.515 OAW Y28 22 Y28 CAS CAS C 0 1 N N N -39.608 -55.513 1.467 3.179 2.828 0.233 CAS Y28 23 Y28 OAY OAY O 0 1 N N N -39.488 -55.954 0.274 3.397 3.930 -0.506 OAY Y28 24 Y28 OAX OAX O 0 1 N N N -38.640 -55.280 2.243 2.811 2.932 1.384 OAX Y28 25 Y28 HAD HAD H 0 1 N N N -49.505 -57.257 6.121 -5.686 -1.401 1.422 HAD Y28 26 Y28 HAF HAF H 0 1 N N N -49.501 -59.637 6.779 -8.047 -1.089 0.794 HAF Y28 27 Y28 HAH HAH H 0 1 N N N -48.364 -60.367 8.860 -8.686 0.739 -0.726 HAH Y28 28 Y28 HAG HAG H 0 1 N N N -47.203 -58.681 10.265 -6.964 2.254 -1.622 HAG Y28 29 Y28 HAE HAE H 0 1 N N N -47.205 -56.295 9.600 -4.603 1.940 -0.997 HAE Y28 30 Y28 HAC1 HAC1 H 0 0 N N N -48.803 -55.237 6.410 -3.045 1.020 0.621 HAC1 Y28 31 Y28 HAC2 HAC2 H 0 0 N N N -48.867 -54.751 8.237 -3.497 -0.375 1.630 HAC2 Y28 32 Y28 HE2 HE2 H 0 1 N N N -47.895 -55.364 4.928 -1.462 -2.388 -1.810 HE2 Y28 33 Y28 HE1 HE1 H 0 1 N N N -44.381 -54.669 7.275 -1.458 0.125 1.647 HE1 Y28 34 Y28 HD2 HD2 H 0 1 N N N -46.471 -56.082 3.057 0.919 -2.891 -1.442 HD2 Y28 35 Y28 HD1 HD1 H 0 1 N N N -42.947 -55.397 5.392 0.922 -0.384 2.009 HD1 Y28 36 Y28 HB1C HB1C H 0 0 N N N -42.850 -56.728 3.208 2.742 -1.939 1.599 HB1C Y28 37 Y28 HB2C HB2C H 0 0 N N N -44.397 -56.998 2.287 2.741 -2.982 0.157 HB2C Y28 38 Y28 HA HA H 0 1 N N N -43.390 -54.169 2.460 3.098 -0.939 -1.261 HA Y28 39 Y28 H H H 0 1 N N N -42.025 -55.668 0.319 2.878 0.452 1.297 H Y28 40 Y28 HXT HXT H 0 1 N N N -46.180 -54.433 0.386 6.200 -2.721 -0.457 HXT Y28 41 Y28 HAY HAY H 0 1 N N N -38.568 -56.075 0.072 3.247 4.784 -0.076 HAY Y28 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y28 CAD CAF SING Y N 1 Y28 CAD CAB DOUB Y N 2 Y28 CAF CAH DOUB Y N 3 Y28 CAH CAG SING Y N 4 Y28 CAG CAE DOUB Y N 5 Y28 CAE CAB SING Y N 6 Y28 CAB CAC SING N N 7 Y28 CAC OH SING N N 8 Y28 OH CZ SING N N 9 Y28 CZ CE2 SING Y N 10 Y28 CZ CE1 DOUB Y N 11 Y28 CE2 CD2 DOUB Y N 12 Y28 CD2 CG SING Y N 13 Y28 CE1 CD1 SING Y N 14 Y28 CD1 CG DOUB Y N 15 Y28 CG CB SING N N 16 Y28 CB CA SING N N 17 Y28 CA C SING N N 18 Y28 CA N SING N N 19 Y28 C OXT SING N N 20 Y28 C O DOUB N N 21 Y28 N CAR SING N N 22 Y28 CAR OAW DOUB N N 23 Y28 CAR CAS SING N N 24 Y28 CAS OAY SING N N 25 Y28 CAS OAX DOUB N N 26 Y28 CAD HAD SING N N 27 Y28 CAF HAF SING N N 28 Y28 CAH HAH SING N N 29 Y28 CAG HAG SING N N 30 Y28 CAE HAE SING N N 31 Y28 CAC HAC1 SING N N 32 Y28 CAC HAC2 SING N N 33 Y28 CE2 HE2 SING N N 34 Y28 CE1 HE1 SING N N 35 Y28 CD2 HD2 SING N N 36 Y28 CD1 HD1 SING N N 37 Y28 CB HB1C SING N N 38 Y28 CB HB2C SING N N 39 Y28 CA HA SING N N 40 Y28 N H SING N N 41 Y28 OXT HXT SING N N 42 Y28 OAY HAY SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y28 SMILES ACDLabs 10.04 "O=C(O)C(=O)NC(C(=O)O)Cc2ccc(OCc1ccccc1)cc2" Y28 SMILES_CANONICAL CACTVS 3.352 "OC(=O)[C@@H](Cc1ccc(OCc2ccccc2)cc1)NC(=O)C(O)=O" Y28 SMILES CACTVS 3.352 "OC(=O)[CH](Cc1ccc(OCc2ccccc2)cc1)NC(=O)C(O)=O" Y28 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "c1ccc(cc1)COc2ccc(cc2)C[C@H](C(=O)O)NC(=O)C(=O)O" Y28 SMILES "OpenEye OEToolkits" 1.6.1 "c1ccc(cc1)COc2ccc(cc2)CC(C(=O)O)NC(=O)C(=O)O" Y28 InChI InChI 1.03 "InChI=1S/C18H17NO6/c20-16(18(23)24)19-15(17(21)22)10-12-6-8-14(9-7-12)25-11-13-4-2-1-3-5-13/h1-9,15H,10-11H2,(H,19,20)(H,21,22)(H,23,24)/t15-/m1/s1" Y28 InChIKey InChI 1.03 XBNMVIZFMMWMFD-OAHLLOKOSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y28 "SYSTEMATIC NAME" ACDLabs 10.04 "O-benzyl-N-(carboxycarbonyl)-D-tyrosine" Y28 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R)-2-(carboxycarbonylamino)-3-(4-phenylmethoxyphenyl)propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y28 "Create component" 2009-10-23 EBI Y28 "Modify aromatic_flag" 2011-06-04 RCSB Y28 "Modify descriptor" 2011-06-04 RCSB Y28 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id Y28 _pdbx_chem_comp_synonyms.name "(2R)-2-(carboxycarbonylamino)-3-(4-phenylmethoxyphenyl)propanoic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##