data_Y2E # _chem_comp.id Y2E _chem_comp.name "3,3,3-trifluoropropyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 Cl F4 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-27 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 587.954 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y2E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FM5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y2E C17 C1 C 0 1 N N S -26.416 -1.391 -75.719 0.124 -0.874 -1.101 C17 Y2E 1 Y2E C20 C2 C 0 1 N N N -25.021 2.184 -75.824 -3.494 -0.125 -0.150 C20 Y2E 2 Y2E C22 C3 C 0 1 Y N N -23.690 4.231 -76.376 -5.839 0.247 -0.034 C22 Y2E 3 Y2E C24 C4 C 0 1 Y N N -23.998 6.393 -75.470 -8.003 1.243 0.262 C24 Y2E 4 Y2E C26 C5 C 0 1 Y N N -23.260 6.931 -76.488 -8.170 0.526 1.436 C26 Y2E 5 Y2E C28 C6 C 0 1 Y N N -22.761 6.143 -77.501 -7.174 -0.329 1.875 C28 Y2E 6 Y2E C02 C7 C 0 1 N N N -29.983 -1.617 -76.581 3.474 -0.977 0.460 C02 Y2E 7 Y2E C04 C8 C 0 1 N N N -31.374 -0.859 -78.311 5.650 -0.389 1.246 C04 Y2E 8 Y2E C05 C9 C 0 1 N N N -32.071 -1.985 -79.064 6.622 0.792 1.214 C05 Y2E 9 Y2E C06 C10 C 0 1 N N N -31.126 -2.811 -79.940 7.898 0.423 1.972 C06 Y2E 10 Y2E C11 C11 C 0 1 N N R -27.486 -1.553 -76.769 1.166 -1.612 -0.246 C11 Y2E 11 Y2E C12 C12 C 0 1 N N N -27.218 -2.704 -77.799 1.551 -2.939 -0.905 C12 Y2E 12 Y2E C14 C13 C 0 1 N N N -24.931 -2.948 -78.780 0.559 -5.159 -1.278 C14 Y2E 13 Y2E C19 C14 C 0 1 N N N -25.166 0.691 -76.051 -2.259 -0.389 -0.947 C19 Y2E 14 Y2E C23 C15 C 0 1 Y N N -24.246 5.038 -75.404 -6.839 1.105 -0.474 C23 Y2E 15 Y2E C29 C16 C 0 1 Y N N -22.993 4.768 -77.443 -6.011 -0.470 1.144 C29 Y2E 16 Y2E C32 C17 C 0 1 Y N N -28.447 -2.125 -74.638 2.062 0.449 -0.921 C32 Y2E 17 Y2E C33 C18 C 0 1 Y N N -27.076 -1.910 -74.381 0.795 0.427 -1.480 C33 Y2E 18 Y2E C34 C19 C 0 1 Y N N -26.558 -2.126 -73.108 0.345 1.491 -2.239 C34 Y2E 19 Y2E C35 C20 C 0 1 Y N N -27.401 -2.591 -72.091 1.160 2.588 -2.447 C35 Y2E 20 Y2E C36 C21 C 0 1 Y N N -28.772 -2.824 -72.321 2.427 2.620 -1.894 C36 Y2E 21 Y2E C37 C22 C 0 1 N N N -29.673 -3.328 -71.169 3.315 3.816 -2.120 C37 Y2E 22 Y2E C39 C23 C 0 1 N N N -31.263 -1.626 -70.665 3.943 5.983 -1.241 C39 Y2E 23 Y2E C40 C24 C 0 1 Y N N -29.281 -2.589 -73.597 2.879 1.561 -1.136 C40 Y2E 24 Y2E F07 F1 F 0 1 N N N -31.789 -3.930 -80.312 7.580 0.117 3.300 F07 Y2E 25 Y2E F08 F2 F 0 1 N N N -29.996 -3.128 -79.257 8.495 -0.688 1.368 F08 Y2E 26 Y2E F09 F3 F 0 1 N N N -30.834 -2.159 -81.103 8.787 1.503 1.943 F09 Y2E 27 Y2E F25 F4 F 0 1 N N N -24.487 7.217 -74.517 -8.977 2.076 -0.165 F25 Y2E 28 Y2E N10 N1 N 0 1 N N N -28.656 -1.798 -76.012 2.325 -0.716 -0.194 N10 Y2E 29 Y2E N13 N2 N 0 1 N N N -26.189 -2.238 -78.727 0.417 -3.864 -0.838 N13 Y2E 30 Y2E N15 N3 N 0 1 N N N -23.899 -2.457 -79.647 1.702 -5.562 -1.756 N15 Y2E 31 Y2E N16 N4 N 0 1 N N N -24.737 -3.989 -78.093 -0.505 -6.027 -1.215 N16 Y2E 32 Y2E N18 N5 N 0 1 N N N -26.280 -0.026 -75.494 -1.088 -0.615 -0.319 N18 Y2E 33 Y2E N21 N6 N 0 1 N N N -23.906 2.816 -76.464 -4.665 0.101 -0.777 N21 Y2E 34 Y2E N38 N7 N 0 1 N N N -29.993 -2.221 -70.285 3.091 4.800 -1.053 N38 Y2E 35 Y2E O01 O1 O 0 1 N N N -30.972 -1.722 -75.936 3.641 -2.058 0.989 O01 Y2E 36 Y2E O03 O2 O 0 1 N N N -30.111 -1.318 -77.920 4.439 -0.040 0.526 O03 Y2E 37 Y2E O30 O3 O 0 1 N N N -25.783 2.772 -75.131 -3.443 -0.115 1.063 O30 Y2E 38 Y2E O31 O4 O 0 1 N N N -24.352 0.131 -76.697 -2.310 -0.399 -2.159 O31 Y2E 39 Y2E CL27 CL1 CL 0 0 N N N -23.012 8.689 -76.522 -9.630 0.701 2.358 CL27 Y2E 40 Y2E H1 H1 H 0 1 N N N -25.485 -1.926 -75.959 -0.116 -1.452 -1.994 H1 Y2E 41 Y2E H2 H2 H 0 1 N N N -22.205 6.577 -78.319 -7.306 -0.886 2.791 H2 Y2E 42 Y2E H3 H3 H 0 1 N N N -31.266 0.018 -78.966 6.115 -1.255 0.775 H3 Y2E 43 Y2E H4 H4 H 0 1 N N N -31.962 -0.583 -77.423 5.402 -0.628 2.280 H4 Y2E 44 Y2E H5 H5 H 0 1 N N N -32.847 -1.545 -79.708 6.870 1.030 0.179 H5 Y2E 45 Y2E H6 H6 H 0 1 N N N -32.541 -2.656 -78.330 6.156 1.658 1.685 H6 Y2E 46 Y2E H7 H7 H 0 1 N N N -27.584 -0.610 -77.326 0.778 -1.787 0.757 H7 Y2E 47 Y2E H8 H8 H 0 1 N N N -28.141 -2.937 -78.349 1.815 -2.763 -1.948 H8 Y2E 48 Y2E H9 H9 H 0 1 N N N -26.868 -3.604 -77.272 2.404 -3.371 -0.382 H9 Y2E 49 Y2E H10 H10 H 0 1 N N N -24.856 4.621 -74.616 -6.709 1.663 -1.389 H10 Y2E 50 Y2E H11 H11 H 0 1 N N N -22.629 4.124 -78.230 -5.235 -1.137 1.488 H11 Y2E 51 Y2E H12 H12 H 0 1 N N N -25.514 -1.937 -72.906 -0.645 1.465 -2.670 H12 Y2E 52 Y2E H13 H13 H 0 1 N N N -26.992 -2.775 -71.109 0.807 3.419 -3.041 H13 Y2E 53 Y2E H14 H14 H 0 1 N N N -30.602 -3.745 -71.585 4.359 3.500 -2.110 H14 Y2E 54 Y2E H15 H15 H 0 1 N N N -29.143 -4.108 -70.603 3.081 4.265 -3.085 H15 Y2E 55 Y2E H16 H16 H 0 1 N N N -31.494 -0.790 -69.989 4.990 5.682 -1.225 H16 Y2E 56 Y2E H17 H17 H 0 1 N N N -31.199 -1.255 -71.698 3.713 6.447 -2.200 H17 Y2E 57 Y2E H18 H18 H 0 1 N N N -32.058 -2.383 -70.596 3.757 6.696 -0.438 H18 Y2E 58 Y2E H19 H19 H 0 1 N N N -30.329 -2.764 -73.793 3.869 1.592 -0.706 H19 Y2E 59 Y2E H20 H20 H 0 1 N N N -26.352 -1.444 -79.313 -0.434 -3.563 -0.482 H20 Y2E 60 Y2E H21 H21 H 0 1 N N N -23.079 -3.029 -79.615 1.803 -6.476 -2.067 H21 Y2E 61 Y2E H22 H22 H 0 1 N N N -25.461 -4.337 -77.498 -1.356 -5.726 -0.860 H22 Y2E 62 Y2E H23 H23 H 0 1 N N N -23.859 -4.465 -78.144 -0.405 -6.940 -1.526 H23 Y2E 63 Y2E H24 H24 H 0 1 N N N -26.959 0.459 -74.943 -1.047 -0.607 0.650 H24 Y2E 64 Y2E H25 H25 H 0 1 N N N -23.262 2.256 -76.985 -4.693 0.163 -1.745 H25 Y2E 65 Y2E H26 H26 H 0 1 N N N -30.053 -2.556 -69.345 2.118 5.061 -1.000 H26 Y2E 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y2E F09 C06 SING N N 1 Y2E F07 C06 SING N N 2 Y2E C06 F08 SING N N 3 Y2E C06 C05 SING N N 4 Y2E N15 C14 DOUB N N 5 Y2E C05 C04 SING N N 6 Y2E C14 N13 SING N N 7 Y2E C14 N16 SING N N 8 Y2E N13 C12 SING N N 9 Y2E C04 O03 SING N N 10 Y2E O03 C02 SING N N 11 Y2E C12 C11 SING N N 12 Y2E C28 C29 DOUB Y N 13 Y2E C28 C26 SING Y N 14 Y2E C29 C22 SING Y N 15 Y2E C11 N10 SING N N 16 Y2E C11 C17 SING N N 17 Y2E O31 C19 DOUB N N 18 Y2E C02 N10 SING N N 19 Y2E C02 O01 DOUB N N 20 Y2E CL27 C26 SING N N 21 Y2E C26 C24 DOUB Y N 22 Y2E N21 C22 SING N N 23 Y2E N21 C20 SING N N 24 Y2E C22 C23 DOUB Y N 25 Y2E C19 C20 SING N N 26 Y2E C19 N18 SING N N 27 Y2E N10 C32 SING N N 28 Y2E C20 O30 DOUB N N 29 Y2E C17 N18 SING N N 30 Y2E C17 C33 SING N N 31 Y2E C24 C23 SING Y N 32 Y2E C24 F25 SING N N 33 Y2E C32 C33 DOUB Y N 34 Y2E C32 C40 SING Y N 35 Y2E C33 C34 SING Y N 36 Y2E C40 C36 DOUB Y N 37 Y2E C34 C35 DOUB Y N 38 Y2E C36 C35 SING Y N 39 Y2E C36 C37 SING N N 40 Y2E C37 N38 SING N N 41 Y2E C39 N38 SING N N 42 Y2E C17 H1 SING N N 43 Y2E C28 H2 SING N N 44 Y2E C04 H3 SING N N 45 Y2E C04 H4 SING N N 46 Y2E C05 H5 SING N N 47 Y2E C05 H6 SING N N 48 Y2E C11 H7 SING N N 49 Y2E C12 H8 SING N N 50 Y2E C12 H9 SING N N 51 Y2E C23 H10 SING N N 52 Y2E C29 H11 SING N N 53 Y2E C34 H12 SING N N 54 Y2E C35 H13 SING N N 55 Y2E C37 H14 SING N N 56 Y2E C37 H15 SING N N 57 Y2E C39 H16 SING N N 58 Y2E C39 H17 SING N N 59 Y2E C39 H18 SING N N 60 Y2E C40 H19 SING N N 61 Y2E N13 H20 SING N N 62 Y2E N15 H21 SING N N 63 Y2E N16 H22 SING N N 64 Y2E N16 H23 SING N N 65 Y2E N18 H24 SING N N 66 Y2E N21 H25 SING N N 67 Y2E N38 H26 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y2E SMILES ACDLabs 12.01 "Clc1ccc(cc1F)NC(=O)C(=O)NC1c2ccc(cc2N(C1CNC(=N)N)C(=O)OCCC(F)(F)F)CNC" Y2E InChI InChI 1.06 "InChI=1S/C24H26ClF4N7O4/c1-32-10-12-2-4-14-17(8-12)36(23(39)40-7-6-24(27,28)29)18(11-33-22(30)31)19(14)35-21(38)20(37)34-13-3-5-15(25)16(26)9-13/h2-5,8-9,18-19,32H,6-7,10-11H2,1H3,(H,34,37)(H,35,38)(H4,30,31,33)/t18-,19+/m1/s1" Y2E InChIKey InChI 1.06 PUALTKTUZNGQRL-MOPGFXCFSA-N Y2E SMILES_CANONICAL CACTVS 3.385 "CNCc1ccc2[C@H](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[C@@H](CNC(N)=N)N(C(=O)OCCC(F)(F)F)c2c1" Y2E SMILES CACTVS 3.385 "CNCc1ccc2[CH](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[CH](CNC(N)=N)N(C(=O)OCCC(F)(F)F)c2c1" Y2E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@@H]1[C@H](c2ccc(cc2N1C(=O)OCCC(F)(F)F)CNC)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl" Y2E SMILES "OpenEye OEToolkits" 2.0.7 "CNCc1ccc2c(c1)N(C(C2NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CNC(=N)N)C(=O)OCCC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y2E "SYSTEMATIC NAME" ACDLabs 12.01 "3,3,3-trifluoropropyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate" Y2E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3,3,3-tris(fluoranyl)propyl (2~{R},3~{S})-2-(carbamimidamidomethyl)-3-[[2-[(4-chloranyl-3-fluoranyl-phenyl)amino]-2-oxidanylidene-ethanoyl]amino]-6-(methylaminomethyl)-2,3-dihydroindole-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y2E "Create component" 2022-12-27 RCSB Y2E "Initial release" 2023-04-05 RCSB #