data_Y2F # _chem_comp.id Y2F _chem_comp.name "6-{[(3R,4R)-4-(2-{[(2S)-1-(3-fluorophenyl)propan-2-yl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H31 F N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-04-29 _chem_comp.pdbx_modified_date 2012-04-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y2F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RQN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y2F N01 N01 N 0 1 Y N N 17.081 8.437 55.349 -5.029 -0.118 -1.005 N01 Y2F 1 Y2F C02 C02 C 0 1 Y N N 16.886 9.665 54.808 -6.314 0.194 -0.939 C02 Y2F 2 Y2F N02 N02 N 0 1 N N N 15.679 10.283 54.877 -7.203 -0.348 -1.860 N02 Y2F 3 Y2F C03 C03 C 0 1 Y N N 17.956 10.308 54.180 -6.784 1.060 0.044 C03 Y2F 4 Y2F C04 C04 C 0 1 Y N N 19.203 9.680 54.119 -5.889 1.592 0.954 C04 Y2F 5 Y2F C05 C05 C 0 1 Y N N 19.369 8.408 54.690 -4.549 1.240 0.851 C05 Y2F 6 Y2F C06 C06 C 0 1 Y N N 18.277 7.793 55.303 -4.153 0.375 -0.149 C06 Y2F 7 Y2F C07 C07 C 0 1 N N N 20.358 10.372 53.434 -6.356 2.534 2.034 C07 Y2F 8 Y2F C08 C08 C 0 1 N N N 18.408 6.405 55.923 -2.701 -0.011 -0.267 C08 Y2F 9 Y2F O09 O09 O 0 1 N N N 17.988 3.602 56.274 -0.287 -0.804 -0.666 O09 Y2F 10 Y2F "N1'" "N1'" N 0 1 N N N 17.648 3.718 53.407 -1.974 -3.203 1.375 "N1'" Y2F 11 Y2F C10 C10 C 0 1 N N N 18.143 2.300 56.834 0.873 -1.040 -1.466 C10 Y2F 12 Y2F C11 C11 C 0 1 N N N 17.069 2.123 57.908 1.676 0.255 -1.594 C11 Y2F 13 Y2F N12 N12 N 0 1 N N N 15.717 2.017 57.392 2.188 0.646 -0.273 N12 Y2F 14 Y2F C13 C13 C 0 1 N N S 14.737 1.122 58.003 2.967 1.889 -0.357 C13 Y2F 15 Y2F C14 C14 C 0 1 N N N 15.221 0.530 59.322 2.022 3.089 -0.274 C14 Y2F 16 Y2F C15 C15 C 0 1 N N N 13.392 1.828 58.207 3.965 1.944 0.800 C15 Y2F 17 Y2F "C2'" "C2'" C 0 1 N N N 18.778 3.091 54.065 -0.695 -2.718 0.794 "C2'" Y2F 18 Y2F C21 C21 C 0 1 Y N N 12.315 0.892 58.752 4.972 0.833 0.650 C21 Y2F 19 Y2F C22 C22 C 0 1 Y N N 11.942 -0.306 58.131 4.726 -0.403 1.217 C22 Y2F 20 Y2F C23 C23 C 0 1 Y N N 10.932 -1.120 58.662 5.648 -1.424 1.080 C23 Y2F 21 Y2F C24 C24 C 0 1 Y N N 10.294 -0.734 59.844 6.817 -1.210 0.374 C24 Y2F 22 Y2F C25 C25 C 0 1 Y N N 10.669 0.456 60.455 7.064 0.028 -0.196 C25 Y2F 23 Y2F F25 F25 F 0 1 N N N 10.091 0.905 61.587 8.206 0.239 -0.886 F25 Y2F 24 Y2F C26 C26 C 0 1 Y N N 11.669 1.253 59.919 6.137 1.048 -0.062 C26 Y2F 25 Y2F "C3'" "C3'" C 0 1 N N R 18.977 3.962 55.310 -1.112 -1.957 -0.483 "C3'" Y2F 26 Y2F "C4'" "C4'" C 0 1 N N R 18.624 5.357 54.819 -2.576 -1.536 -0.239 "C4'" Y2F 27 Y2F "C5'" "C5'" C 0 1 N N N 17.409 5.079 53.908 -2.920 -2.077 1.165 "C5'" Y2F 28 Y2F HN02 HN02 H 0 0 N N N 15.031 9.697 55.363 -6.880 -0.952 -2.547 HN02 Y2F 29 Y2F HN0A HN0A H 0 0 N N N 15.776 11.150 55.366 -8.145 -0.122 -1.816 HN0A Y2F 30 Y2F H03 H03 H 0 1 N N N 17.820 11.286 53.743 -7.832 1.314 0.095 H03 Y2F 31 Y2F H05 H05 H 0 1 N N N 20.328 7.913 54.655 -3.825 1.638 1.546 H05 Y2F 32 Y2F H07 H07 H 0 1 N N N 20.908 10.981 54.167 -6.631 1.963 2.920 H07 Y2F 33 Y2F H07A H07A H 0 0 N N N 21.034 9.618 53.004 -5.554 3.228 2.283 H07A Y2F 34 Y2F H07B H07B H 0 0 N N N 19.974 11.020 52.633 -7.222 3.093 1.678 H07B Y2F 35 Y2F H08 H08 H 0 1 N N N 19.267 6.393 56.610 -2.299 0.370 -1.205 H08 Y2F 36 Y2F H08A H08A H 0 0 N N N 17.489 6.166 56.477 -2.144 0.414 0.568 H08A Y2F 37 Y2F "HN1'" "HN1'" H 0 0 N N N 16.832 3.166 53.577 -1.869 -3.409 2.357 "HN1'" Y2F 38 Y2F H10 H10 H 0 1 N N N 18.023 1.536 56.051 1.490 -1.806 -0.995 H10 Y2F 39 Y2F H10A H10A H 0 0 N N N 19.143 2.198 57.281 0.568 -1.378 -2.457 H10A Y2F 40 Y2F H11 H11 H 0 1 N N N 17.293 1.198 58.460 2.512 0.099 -2.276 H11 Y2F 41 Y2F H11A H11A H 0 0 N N N 17.109 2.999 58.572 1.033 1.045 -1.982 H11A Y2F 42 Y2F HN12 HN12 H 0 0 N N N 15.327 2.935 57.465 1.437 0.735 0.394 HN12 Y2F 43 Y2F H13 H13 H 0 1 N N N 14.602 0.289 57.297 3.506 1.917 -1.304 H13 Y2F 44 Y2F H14 H14 H 0 1 N N N 14.445 -0.132 59.734 1.310 3.050 -1.098 H14 Y2F 45 Y2F H14A H14A H 0 0 N N N 16.142 -0.047 59.149 1.482 3.062 0.673 H14A Y2F 46 Y2F H14B H14B H 0 0 N N N 15.426 1.342 60.035 2.599 4.012 -0.336 H14B Y2F 47 Y2F H15 H15 H 0 1 N N N 13.535 2.649 58.925 4.481 2.905 0.790 H15 Y2F 48 Y2F H15A H15A H 0 0 N N N 13.054 2.220 57.236 3.434 1.828 1.745 H15A Y2F 49 Y2F "H2'" "H2'" H 0 1 N N N 18.565 2.045 54.330 -0.192 -2.046 1.490 "H2'" Y2F 50 Y2F "H2'A" "H2'A" H 0 0 N N N 19.672 3.088 53.424 -0.049 -3.558 0.542 "H2'A" Y2F 51 Y2F H22 H22 H 0 1 N N N 12.443 -0.609 57.224 3.813 -0.571 1.770 H22 Y2F 52 Y2F H23 H23 H 0 1 N N N 10.650 -2.035 58.163 5.456 -2.389 1.525 H23 Y2F 53 Y2F H24 H24 H 0 1 N N N 9.521 -1.352 60.276 7.537 -2.007 0.267 H24 Y2F 54 Y2F H26 H26 H 0 1 N N N 11.947 2.168 60.420 6.327 2.012 -0.510 H26 Y2F 55 Y2F "H3'" "H3'" H 0 1 N N N 19.982 3.870 55.748 -1.044 -2.612 -1.352 "H3'" Y2F 56 Y2F "H4'" "H4'" H 0 1 N N N 19.449 5.850 54.284 -3.228 -1.982 -0.989 "H4'" Y2F 57 Y2F "H5'" "H5'" H 0 1 N N N 17.351 5.805 53.084 -3.949 -2.436 1.192 "H5'" Y2F 58 Y2F "H5'A" "H5'A" H 0 0 N N N 16.465 5.140 54.469 -2.766 -1.305 1.918 "H5'A" Y2F 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y2F C02 N01 DOUB Y N 1 Y2F C06 N01 SING Y N 2 Y2F C03 C02 SING Y N 3 Y2F C02 N02 SING N N 4 Y2F N02 HN02 SING N N 5 Y2F N02 HN0A SING N N 6 Y2F C04 C03 DOUB Y N 7 Y2F C03 H03 SING N N 8 Y2F C07 C04 SING N N 9 Y2F C04 C05 SING Y N 10 Y2F C05 C06 DOUB Y N 11 Y2F C05 H05 SING N N 12 Y2F C06 C08 SING N N 13 Y2F C07 H07 SING N N 14 Y2F C07 H07A SING N N 15 Y2F C07 H07B SING N N 16 Y2F "C4'" C08 SING N N 17 Y2F C08 H08 SING N N 18 Y2F C08 H08A SING N N 19 Y2F "C3'" O09 SING N N 20 Y2F O09 C10 SING N N 21 Y2F "N1'" "C5'" SING N N 22 Y2F "N1'" "C2'" SING N N 23 Y2F "N1'" "HN1'" SING N N 24 Y2F C10 C11 SING N N 25 Y2F C10 H10 SING N N 26 Y2F C10 H10A SING N N 27 Y2F N12 C11 SING N N 28 Y2F C11 H11 SING N N 29 Y2F C11 H11A SING N N 30 Y2F N12 C13 SING N N 31 Y2F N12 HN12 SING N N 32 Y2F C13 C15 SING N N 33 Y2F C13 C14 SING N N 34 Y2F C13 H13 SING N N 35 Y2F C14 H14 SING N N 36 Y2F C14 H14A SING N N 37 Y2F C14 H14B SING N N 38 Y2F C15 C21 SING N N 39 Y2F C15 H15 SING N N 40 Y2F C15 H15A SING N N 41 Y2F "C2'" "C3'" SING N N 42 Y2F "C2'" "H2'" SING N N 43 Y2F "C2'" "H2'A" SING N N 44 Y2F C22 C21 DOUB Y N 45 Y2F C21 C26 SING Y N 46 Y2F C22 C23 SING Y N 47 Y2F C22 H22 SING N N 48 Y2F C23 C24 DOUB Y N 49 Y2F C23 H23 SING N N 50 Y2F C24 C25 SING Y N 51 Y2F C24 H24 SING N N 52 Y2F C26 C25 DOUB Y N 53 Y2F C25 F25 SING N N 54 Y2F C26 H26 SING N N 55 Y2F "C4'" "C3'" SING N N 56 Y2F "C3'" "H3'" SING N N 57 Y2F "C5'" "C4'" SING N N 58 Y2F "C4'" "H4'" SING N N 59 Y2F "C5'" "H5'" SING N N 60 Y2F "C5'" "H5'A" SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y2F SMILES ACDLabs 12.01 "Fc1cccc(c1)CC(NCCOC2C(CNC2)Cc3nc(N)cc(c3)C)C" Y2F SMILES_CANONICAL CACTVS 3.370 "C[C@@H](Cc1cccc(F)c1)NCCO[C@H]2CNC[C@H]2Cc3cc(C)cc(N)n3" Y2F SMILES CACTVS 3.370 "C[CH](Cc1cccc(F)c1)NCCO[CH]2CNC[CH]2Cc3cc(C)cc(N)n3" Y2F SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1cc(nc(c1)N)C[C@@H]2CNC[C@@H]2OCCN[C@@H](C)Cc3cccc(c3)F" Y2F SMILES "OpenEye OEToolkits" 1.7.2 "Cc1cc(nc(c1)N)CC2CNCC2OCCNC(C)Cc3cccc(c3)F" Y2F InChI InChI 1.03 "InChI=1S/C22H31FN4O/c1-15-8-20(27-22(24)9-15)12-18-13-25-14-21(18)28-7-6-26-16(2)10-17-4-3-5-19(23)11-17/h3-5,8-9,11,16,18,21,25-26H,6-7,10,12-14H2,1-2H3,(H2,24,27)/t16-,18+,21-/m0/s1" Y2F InChIKey InChI 1.03 AUSIEXNWJKDTQY-CDXJDZJCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y2F "SYSTEMATIC NAME" ACDLabs 12.01 "6-{[(3R,4R)-4-(2-{[(2S)-1-(3-fluorophenyl)propan-2-yl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine" Y2F "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "6-[[(3R,4R)-4-[2-[[(2S)-1-(3-fluorophenyl)propan-2-yl]amino]ethoxy]pyrrolidin-3-yl]methyl]-4-methyl-pyridin-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y2F "Create component" 2011-04-29 RCSB Y2F "Modify aromatic_flag" 2011-06-04 RCSB Y2F "Modify descriptor" 2011-06-04 RCSB #