data_Y2H # _chem_comp.id Y2H _chem_comp.name "4-[(7-benzyl-9-methyl-8-oxo-8,9-dihydro-7H-purin-2-yl)amino]-N-(1-methylpiperidin-4-yl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H29 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-09 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y2H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G6E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y2H C10 C1 C 0 1 Y N N N N N -13.715 7.560 45.639 2.725 0.054 0.727 C10 Y2H 1 Y2H O14 O1 O 0 1 N N N N N N -10.653 8.508 42.136 7.257 -1.313 0.499 O14 Y2H 2 Y2H C16 C2 C 0 1 Y N N N N N -11.357 12.474 50.972 -3.165 -0.531 0.160 C16 Y2H 3 Y2H C18 C3 C 0 1 N N N N N N -10.060 10.605 44.234 5.778 -3.434 -0.831 C18 Y2H 4 Y2H C19 C4 C 0 1 N N N N N N -10.012 13.971 54.342 -6.769 0.649 -0.045 C19 Y2H 5 Y2H C20 C5 C 0 1 Y N N N N N -12.774 12.365 51.124 -2.997 -1.178 -1.068 C20 Y2H 6 Y2H C21 C6 C 0 1 Y N N N N N -10.745 11.702 50.009 -2.103 -0.470 1.066 C21 Y2H 7 Y2H C22 C7 C 0 1 N N N N N N -10.979 14.134 55.519 -7.517 1.003 -1.334 C22 Y2H 8 Y2H C23 C8 C 0 1 N N N N N N -8.804 13.113 54.724 -7.613 -0.334 0.772 C23 Y2H 9 Y2H C24 C9 C 0 1 N N N N N N -8.186 13.580 56.045 -8.977 0.294 1.065 C24 Y2H 10 Y2H C25 C10 C 0 1 N N N N N N -10.233 14.533 56.801 -8.884 1.592 -0.979 C25 Y2H 11 Y2H C26 C11 C 0 1 Y N N N N N -12.877 10.794 49.237 -0.730 -1.690 -0.476 C26 Y2H 12 Y2H C27 C12 C 0 1 Y N N N N N -12.263 5.339 43.199 6.021 2.020 0.553 C27 Y2H 13 Y2H C28 C13 C 0 1 Y N N N N N -13.545 11.495 50.280 -1.786 -1.752 -1.381 C28 Y2H 14 Y2H N1 N1 N 0 1 N N N N N N -11.059 9.526 44.214 5.286 -2.201 -0.213 N1 Y2H 15 Y2H C2 C14 C 0 1 Y N N N N N -11.947 9.204 45.225 3.963 -1.804 -0.147 C2 Y2H 16 Y2H C3 C15 C 0 1 N N N N N N -11.247 8.566 43.160 6.046 -1.265 0.386 C3 Y2H 17 Y2H N4 N2 N 0 1 N N N N N N -12.303 7.700 43.548 5.263 -0.267 0.842 N4 Y2H 18 Y2H C5 C16 C 0 1 Y N N N N N -12.718 8.061 44.800 3.943 -0.574 0.523 C5 Y2H 19 Y2H N6 N3 N 0 1 Y N N N N N -12.129 9.830 46.430 2.819 -2.327 -0.565 N6 Y2H 20 Y2H C7 C17 C 0 1 Y N N N N N -13.130 9.254 47.181 1.674 -1.698 -0.345 C7 Y2H 21 Y2H C8 C18 C 0 1 N N N N N N -10.412 13.326 51.845 -4.460 0.091 0.496 C8 Y2H 22 Y2H N9 N4 N 0 1 Y N N N N N -13.917 8.158 46.848 1.622 -0.534 0.285 N9 Y2H 23 Y2H N11 N5 N 0 1 N N N N N N -10.709 13.327 53.228 -5.484 0.031 -0.379 N11 Y2H 24 Y2H C12 C19 C 0 1 N N N N N N -12.883 6.643 42.781 5.722 0.931 1.550 C12 Y2H 25 Y2H N13 N6 N 0 1 N N N N N N -9.177 13.574 57.116 -9.653 0.613 -0.199 N13 Y2H 26 Y2H N15 N7 N 0 1 N N N N N N -13.466 9.822 48.420 0.494 -2.273 -0.795 N15 Y2H 27 Y2H O17 O2 O 0 1 N N N N N N -9.425 13.924 51.389 -4.604 0.658 1.562 O17 Y2H 28 Y2H C29 C20 C 0 1 Y N N N N N -11.471 10.867 49.157 -0.894 -1.047 0.748 C29 Y2H 29 Y2H C30 C21 C 0 1 N N N N N N -8.544 13.890 58.421 -11.021 1.090 0.041 C30 Y2H 30 Y2H C31 C22 C 0 1 Y N N N N N -12.892 4.457 44.082 5.027 2.905 0.177 C31 Y2H 31 Y2H C32 C23 C 0 1 Y N N N N N -10.996 4.997 42.633 7.290 2.139 0.019 C32 Y2H 32 Y2H C33 C24 C 0 1 Y N N N N N -10.403 3.810 42.982 7.566 3.142 -0.891 C33 Y2H 33 Y2H C34 C25 C 0 1 Y N N N N N -12.283 3.277 44.457 5.303 3.907 -0.734 C34 Y2H 34 Y2H C35 C26 C 0 1 Y N N N N N -11.013 2.931 43.912 6.572 4.026 -1.268 C35 Y2H 35 Y2H H36 H1 H 0 1 N N N N N N -14.315 6.715 45.336 2.675 1.003 1.240 H36 Y2H 36 Y2H H43 H2 H 0 1 N N N N N N -9.505 10.609 43.284 6.002 -3.250 -1.881 H43 Y2H 37 Y2H H41 H3 H 0 1 N N N N N N -10.567 11.572 44.366 6.682 -3.762 -0.318 H41 Y2H 38 Y2H H42 H4 H 0 1 N N N N N N -9.360 10.441 45.067 5.015 -4.209 -0.753 H42 Y2H 39 Y2H H44 H5 H 0 1 N N N N N N -9.658 14.966 54.033 -6.599 1.555 0.538 H44 Y2H 40 Y2H H45 H6 H 0 1 N N N N N N -13.273 12.946 51.885 -3.816 -1.227 -1.770 H45 Y2H 41 Y2H H46 H7 H 0 1 N N N N N N -9.670 11.744 49.910 -2.230 0.029 2.016 H46 Y2H 42 Y2H H47 H8 H 0 1 N N N N N N -11.714 14.915 55.274 -6.941 1.735 -1.899 H47 Y2H 43 Y2H H48 H9 H 0 1 N N N N N N -11.500 13.181 55.689 -7.653 0.103 -1.934 H48 Y2H 44 Y2H H49 H10 H 0 1 N N N N N N -9.126 12.067 54.829 -7.750 -1.254 0.205 H49 Y2H 45 Y2H H50 H11 H 0 1 N N N N N N -8.047 13.185 53.929 -7.105 -0.556 1.711 H50 Y2H 46 Y2H H51 H12 H 0 1 N N N N N N -7.798 14.602 55.919 -9.585 -0.409 1.635 H51 Y2H 47 Y2H H52 H13 H 0 1 N N N N N N -7.361 12.905 56.315 -8.840 1.207 1.644 H52 Y2H 48 Y2H H53 H14 H 0 1 N N N N N N -10.948 14.567 57.636 -8.748 2.499 -0.390 H53 Y2H 49 Y2H H54 H15 H 0 1 N N N N N N -9.785 15.528 56.661 -9.425 1.831 -1.895 H54 Y2H 50 Y2H H55 H16 H 0 1 N N N N N N -14.607 11.376 50.433 -1.655 -2.252 -2.329 H55 Y2H 51 Y2H H37 H17 H 0 1 N N N N N N -11.523 12.806 53.485 -5.369 -0.421 -1.229 H37 Y2H 52 Y2H H38 H18 H 0 1 N N N N N N -13.968 6.610 42.960 6.625 0.696 2.114 H38 Y2H 53 Y2H H39 H19 H 0 1 N N N N N N -12.693 6.816 41.711 4.943 1.268 2.235 H39 Y2H 54 Y2H H40 H21 H 0 1 N N N N N N -14.312 9.451 48.803 0.521 -3.080 -1.333 H40 Y2H 55 Y2H H56 H22 H 0 1 N N N N N N -10.948 10.268 48.426 -0.073 -1.000 1.447 H56 Y2H 56 Y2H H58 H23 H 0 1 N N N N N N -9.308 13.880 59.212 -10.991 1.988 0.658 H58 Y2H 57 Y2H H57 H24 H 0 1 N N N N N N -7.773 13.138 58.646 -11.499 1.319 -0.912 H57 Y2H 58 Y2H H59 H25 H 0 1 N N N N N N -8.081 14.886 58.372 -11.591 0.315 0.556 H59 Y2H 59 Y2H H60 H26 H 0 1 N N N N N N -13.867 4.702 44.476 4.035 2.812 0.594 H60 Y2H 60 Y2H H61 H27 H 0 1 N N N N N N -10.510 5.666 41.938 8.066 1.448 0.313 H61 Y2H 61 Y2H H62 H28 H 0 1 N N N N N N -9.455 3.541 42.540 8.558 3.235 -1.308 H62 Y2H 62 Y2H H63 H29 H 0 1 N N N N N N -12.768 2.618 45.162 4.527 4.598 -1.028 H63 Y2H 63 Y2H H64 H30 H 0 1 N N N N N N -10.523 2.014 44.203 6.788 4.810 -1.979 H64 Y2H 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y2H N1 C2 SING N N 1 Y2H N1 C3 SING N N 2 Y2H N1 C18 SING N N 3 Y2H C2 C5 DOUB Y N 4 Y2H C2 N6 SING Y N 5 Y2H C3 N4 SING N N 6 Y2H C3 O14 DOUB N N 7 Y2H N4 C12 SING N N 8 Y2H N4 C5 SING N N 9 Y2H C5 C10 SING Y N 10 Y2H N6 C7 DOUB Y N 11 Y2H C7 N15 SING N N 12 Y2H C7 N9 SING Y N 13 Y2H C8 C16 SING N N 14 Y2H C8 N11 SING N N 15 Y2H C8 O17 DOUB N N 16 Y2H N9 C10 DOUB Y N 17 Y2H N11 C19 SING N N 18 Y2H C12 C27 SING N N 19 Y2H N13 C24 SING N N 20 Y2H N13 C30 SING N N 21 Y2H N13 C25 SING N N 22 Y2H N15 C26 SING N N 23 Y2H C16 C21 DOUB Y N 24 Y2H C16 C20 SING Y N 25 Y2H C19 C22 SING N N 26 Y2H C19 C23 SING N N 27 Y2H C20 C28 DOUB Y N 28 Y2H C21 C29 SING Y N 29 Y2H C22 C25 SING N N 30 Y2H C23 C24 SING N N 31 Y2H C26 C28 SING Y N 32 Y2H C26 C29 DOUB Y N 33 Y2H C27 C31 DOUB Y N 34 Y2H C27 C32 SING Y N 35 Y2H C31 C34 SING Y N 36 Y2H C32 C33 DOUB Y N 37 Y2H C33 C35 SING Y N 38 Y2H C34 C35 DOUB Y N 39 Y2H C10 H36 SING N N 40 Y2H C18 H43 SING N N 41 Y2H C18 H41 SING N N 42 Y2H C18 H42 SING N N 43 Y2H C19 H44 SING N N 44 Y2H C20 H45 SING N N 45 Y2H C21 H46 SING N N 46 Y2H C22 H47 SING N N 47 Y2H C22 H48 SING N N 48 Y2H C23 H49 SING N N 49 Y2H C23 H50 SING N N 50 Y2H C24 H51 SING N N 51 Y2H C24 H52 SING N N 52 Y2H C25 H53 SING N N 53 Y2H C25 H54 SING N N 54 Y2H C28 H55 SING N N 55 Y2H N11 H37 SING N N 56 Y2H C12 H38 SING N N 57 Y2H C12 H39 SING N N 58 Y2H N15 H40 SING N N 59 Y2H C29 H56 SING N N 60 Y2H C30 H58 SING N N 61 Y2H C30 H57 SING N N 62 Y2H C30 H59 SING N N 63 Y2H C31 H60 SING N N 64 Y2H C32 H61 SING N N 65 Y2H C33 H62 SING N N 66 Y2H C34 H63 SING N N 67 Y2H C35 H64 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y2H SMILES ACDLabs 12.01 "CN1CCC(NC(=O)c2ccc(Nc3nc4N(C)C(=O)N(Cc5ccccc5)c4cn3)cc2)CC1" Y2H InChI InChI 1.06 "InChI=1S/C26H29N7O2/c1-31-14-12-21(13-15-31)28-24(34)19-8-10-20(11-9-19)29-25-27-16-22-23(30-25)32(2)26(35)33(22)17-18-6-4-3-5-7-18/h3-11,16,21H,12-15,17H2,1-2H3,(H,28,34)(H,27,29,30)" Y2H InChIKey InChI 1.06 UGLOBKNDLOPVQW-UHFFFAOYSA-N Y2H SMILES_CANONICAL CACTVS 3.385 "CN1CCC(CC1)NC(=O)c2ccc(Nc3ncc4N(Cc5ccccc5)C(=O)N(C)c4n3)cc2" Y2H SMILES CACTVS 3.385 "CN1CCC(CC1)NC(=O)c2ccc(Nc3ncc4N(Cc5ccccc5)C(=O)N(C)c4n3)cc2" Y2H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)c2ccc(cc2)Nc3ncc4c(n3)N(C(=O)N4Cc5ccccc5)C" Y2H SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)c2ccc(cc2)Nc3ncc4c(n3)N(C(=O)N4Cc5ccccc5)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y2H "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(7-benzyl-9-methyl-8-oxo-8,9-dihydro-7H-purin-2-yl)amino]-N-(1-methylpiperidin-4-yl)benzamide" Y2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[9-methyl-8-oxidanylidene-7-(phenylmethyl)purin-2-yl]amino]-~{N}-(1-methylpiperidin-4-yl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y2H "Create component" 2023-06-09 RCSB Y2H "Initial release" 2024-12-18 RCSB #