data_Y2K # _chem_comp.id Y2K _chem_comp.name "2,2,2-trifluoroethyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H24 Cl F4 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-27 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 573.928 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y2K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FM4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y2K C13 C1 C 0 1 N N R -27.681 -1.665 -76.413 -1.454 -1.711 -0.122 C13 Y2K 1 Y2K C17 C2 C 0 1 N N N -25.236 2.010 -75.499 3.183 -0.199 0.158 C17 Y2K 2 Y2K C20 C3 C 0 1 Y N N -23.167 4.598 -77.262 5.418 1.268 -0.828 C20 Y2K 3 Y2K C21 C4 C 0 1 Y N N -22.938 5.984 -77.331 6.572 1.695 -1.455 C21 Y2K 4 Y2K C22 C5 C 0 1 Y N N -23.404 6.748 -76.290 7.803 1.219 -1.041 C22 Y2K 5 Y2K C24 C6 C 0 1 Y N N -24.113 6.190 -75.243 7.882 0.310 0.003 C24 Y2K 6 Y2K C26 C7 C 0 1 Y N N -24.366 4.832 -75.139 6.730 -0.120 0.634 C26 Y2K 7 Y2K C02 C8 C 0 1 N N N -30.140 -1.749 -76.233 -3.735 -1.063 -0.899 C02 Y2K 8 Y2K C04 C9 C 0 1 Y N N -28.592 -2.297 -74.281 -2.434 0.268 0.673 C04 Y2K 9 Y2K C05 C10 C 0 1 Y N N -27.243 -2.045 -74.047 -1.198 0.223 1.297 C05 Y2K 10 Y2K C06 C11 C 0 1 Y N N -26.663 -2.229 -72.799 -0.815 1.227 2.166 C06 Y2K 11 Y2K C07 C12 C 0 1 Y N N -27.481 -2.704 -71.771 -1.665 2.287 2.420 C07 Y2K 12 Y2K C08 C13 C 0 1 Y N N -28.860 -2.974 -71.994 -2.901 2.341 1.801 C08 Y2K 13 Y2K C09 C14 C 0 1 N N N -29.675 -3.509 -70.780 -3.828 3.496 2.076 C09 Y2K 14 Y2K C11 C15 C 0 1 N N N -31.010 -1.498 -70.419 -4.459 5.718 1.348 C11 Y2K 15 Y2K C12 C16 C 0 1 Y N N -29.437 -2.771 -73.262 -3.287 1.342 0.933 C12 Y2K 16 Y2K C14 C17 C 0 1 N N S -26.582 -1.537 -75.371 -0.477 -1.028 0.849 C14 Y2K 17 Y2K C16 C18 C 0 1 N N N -25.352 0.550 -75.736 1.913 -0.553 0.860 C16 Y2K 18 Y2K C19 C19 C 0 1 Y N N -23.824 4.045 -76.138 5.493 0.358 0.220 C19 Y2K 19 Y2K C29 C20 C 0 1 N N N -27.431 -2.753 -77.526 -1.842 -3.096 0.401 C29 Y2K 20 Y2K C31 C21 C 0 1 N N N -25.063 -3.003 -78.495 -0.819 -5.320 0.643 C31 Y2K 21 Y2K C35 C22 C 0 1 N N N -31.467 -1.099 -77.971 -5.879 -0.452 -1.753 C35 Y2K 22 Y2K C36 C23 C 0 1 N N N -31.592 -2.168 -79.112 -6.879 0.703 -1.676 C36 Y2K 23 Y2K F25 F1 F 0 1 N N N -24.553 7.012 -74.326 9.086 -0.154 0.404 F25 Y2K 24 Y2K F37 F2 F 0 1 N N N -31.497 -3.372 -78.528 -6.277 1.873 -2.152 F37 Y2K 25 Y2K F38 F3 F 0 1 N N N -30.601 -2.082 -80.050 -7.999 0.404 -2.459 F38 Y2K 26 Y2K F39 F4 F 0 1 N N N -32.815 -1.986 -79.729 -7.275 0.890 -0.347 F39 Y2K 27 Y2K N03 N1 N 0 1 N N N -28.816 -1.979 -75.658 -2.629 -0.836 -0.164 N03 Y2K 28 Y2K N10 N2 N 0 1 N N N -31.014 -2.938 -70.838 -3.570 4.572 1.110 N10 Y2K 29 Y2K N15 N3 N 0 1 N N N -26.462 -0.156 -75.163 0.769 -0.681 0.160 N15 Y2K 30 Y2K N18 N4 N 0 1 N N N -24.066 2.610 -76.172 4.327 -0.072 0.859 N18 Y2K 31 Y2K N30 N5 N 0 1 N N N -26.366 -2.313 -78.413 -0.684 -3.990 0.321 N30 Y2K 32 Y2K N32 N6 N 0 1 N N N -24.048 -2.445 -79.394 -1.976 -5.785 1.020 N32 Y2K 33 Y2K N33 N7 N 0 1 N N N -24.782 -4.072 -77.817 0.268 -6.159 0.567 N33 Y2K 34 Y2K O01 O1 O 0 1 N N N -31.187 -1.990 -75.696 -3.847 -2.098 -1.526 O01 Y2K 35 Y2K O27 O2 O 0 1 N N N -26.012 2.593 -74.816 3.184 -0.027 -1.043 O27 Y2K 36 Y2K O28 O3 O 0 1 N N N -24.537 0.017 -76.356 1.911 -0.726 2.062 O28 Y2K 37 Y2K O34 O4 O 0 1 N N N -30.138 -1.229 -77.507 -4.717 -0.142 -0.940 O34 Y2K 38 Y2K CL23 CL1 CL 0 0 N N N -23.198 8.529 -76.212 9.251 1.758 -1.832 CL23 Y2K 39 Y2K H1 H1 H 0 1 N N N -27.809 -0.693 -76.911 -1.008 -1.792 -1.113 H1 Y2K 40 Y2K H2 H2 H 0 1 N N N -22.841 3.956 -78.067 4.458 1.644 -1.149 H2 Y2K 41 Y2K H3 H3 H 0 1 N N N -22.418 6.428 -78.167 6.513 2.402 -2.269 H3 Y2K 42 Y2K H4 H4 H 0 1 N N N -24.948 4.415 -74.331 6.791 -0.828 1.447 H4 Y2K 43 Y2K H5 H5 H 0 1 N N N -25.619 -2.013 -72.629 0.150 1.183 2.648 H5 Y2K 44 Y2K H6 H6 H 0 1 N N N -27.060 -2.869 -70.790 -1.365 3.071 3.099 H6 Y2K 45 Y2K H7 H7 H 0 1 N N N -29.737 -4.606 -70.828 -4.862 3.163 1.982 H7 Y2K 46 Y2K H8 H8 H 0 1 N N N -29.184 -3.210 -69.842 -3.657 3.867 3.087 H8 Y2K 47 Y2K H9 H9 H 0 1 N N N -32.033 -1.097 -70.473 -5.496 5.400 1.248 H9 Y2K 48 Y2K H10 H10 H 0 1 N N N -30.639 -1.418 -69.386 -4.292 6.104 2.353 H10 Y2K 49 Y2K H11 H11 H 0 1 N N N -30.355 -0.923 -71.090 -4.247 6.500 0.618 H11 Y2K 50 Y2K H12 H12 H 0 1 N N N -30.483 -2.971 -73.444 -4.253 1.390 0.453 H12 Y2K 51 Y2K H13 H13 H 0 1 N N N -25.656 -2.072 -75.628 -0.272 -1.677 1.700 H13 Y2K 52 Y2K H14 H14 H 0 1 N N N -28.353 -2.900 -78.107 -2.166 -3.014 1.439 H14 Y2K 53 Y2K H15 H15 H 0 1 N N N -27.142 -3.702 -77.051 -2.654 -3.498 -0.203 H15 Y2K 54 Y2K H16 H16 H 0 1 N N N -31.644 -0.087 -78.365 -6.348 -1.364 -1.382 H16 Y2K 55 Y2K H17 H17 H 0 1 N N N -32.183 -1.308 -77.163 -5.570 -0.598 -2.788 H17 Y2K 56 Y2K H18 H18 H 0 1 N N N -31.356 -3.004 -71.775 -2.602 4.854 1.133 H18 Y2K 57 Y2K H20 H20 H 0 1 N N N -27.144 0.333 -74.620 0.770 -0.544 -0.800 H20 Y2K 58 Y2K H21 H21 H 0 1 N N N -23.426 2.018 -76.662 4.341 -0.277 1.807 H21 Y2K 59 Y2K H22 H22 H 0 1 N N N -26.522 -1.512 -78.990 0.178 -3.644 0.040 H22 Y2K 60 Y2K H23 H23 H 0 1 N N N -23.204 -2.981 -79.384 -2.071 -6.723 1.248 H23 Y2K 61 Y2K H24 H24 H 0 1 N N N -25.464 -4.468 -77.202 1.129 -5.813 0.287 H24 Y2K 62 Y2K H25 H25 H 0 1 N N N -23.883 -4.501 -77.909 0.173 -7.097 0.795 H25 Y2K 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y2K F38 C36 SING N N 1 Y2K F39 C36 SING N N 2 Y2K N32 C31 DOUB N N 3 Y2K C36 F37 SING N N 4 Y2K C36 C35 SING N N 5 Y2K C31 N30 SING N N 6 Y2K C31 N33 SING N N 7 Y2K N30 C29 SING N N 8 Y2K C35 O34 SING N N 9 Y2K C29 C13 SING N N 10 Y2K O34 C02 SING N N 11 Y2K C21 C20 DOUB Y N 12 Y2K C21 C22 SING Y N 13 Y2K C20 C19 SING Y N 14 Y2K C13 N03 SING N N 15 Y2K C13 C14 SING N N 16 Y2K O28 C16 DOUB N N 17 Y2K C22 CL23 SING N N 18 Y2K C22 C24 DOUB Y N 19 Y2K C02 O01 DOUB N N 20 Y2K C02 N03 SING N N 21 Y2K N18 C19 SING N N 22 Y2K N18 C17 SING N N 23 Y2K C19 C26 DOUB Y N 24 Y2K C16 C17 SING N N 25 Y2K C16 N15 SING N N 26 Y2K N03 C04 SING N N 27 Y2K C17 O27 DOUB N N 28 Y2K C14 N15 SING N N 29 Y2K C14 C05 SING N N 30 Y2K C24 C26 SING Y N 31 Y2K C24 F25 SING N N 32 Y2K C04 C05 DOUB Y N 33 Y2K C04 C12 SING Y N 34 Y2K C05 C06 SING Y N 35 Y2K C12 C08 DOUB Y N 36 Y2K C06 C07 DOUB Y N 37 Y2K C08 C07 SING Y N 38 Y2K C08 C09 SING N N 39 Y2K N10 C09 SING N N 40 Y2K N10 C11 SING N N 41 Y2K C13 H1 SING N N 42 Y2K C20 H2 SING N N 43 Y2K C21 H3 SING N N 44 Y2K C26 H4 SING N N 45 Y2K C06 H5 SING N N 46 Y2K C07 H6 SING N N 47 Y2K C09 H7 SING N N 48 Y2K C09 H8 SING N N 49 Y2K C11 H9 SING N N 50 Y2K C11 H10 SING N N 51 Y2K C11 H11 SING N N 52 Y2K C12 H12 SING N N 53 Y2K C14 H13 SING N N 54 Y2K C29 H14 SING N N 55 Y2K C29 H15 SING N N 56 Y2K C35 H16 SING N N 57 Y2K C35 H17 SING N N 58 Y2K N10 H18 SING N N 59 Y2K N15 H20 SING N N 60 Y2K N18 H21 SING N N 61 Y2K N30 H22 SING N N 62 Y2K N32 H23 SING N N 63 Y2K N33 H24 SING N N 64 Y2K N33 H25 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y2K SMILES ACDLabs 12.01 "Clc1ccc(cc1F)NC(=O)C(=O)NC1c2ccc(cc2N(C1CNC(=N)N)C(=O)OCC(F)(F)F)CNC" Y2K InChI InChI 1.06 "InChI=1S/C23H24ClF4N7O4/c1-31-8-11-2-4-13-16(6-11)35(22(38)39-10-23(26,27)28)17(9-32-21(29)30)18(13)34-20(37)19(36)33-12-3-5-14(24)15(25)7-12/h2-7,17-18,31H,8-10H2,1H3,(H,33,36)(H,34,37)(H4,29,30,32)/t17-,18+/m1/s1" Y2K InChIKey InChI 1.06 ZQTHNGZNKSRWJH-MSOLQXFVSA-N Y2K SMILES_CANONICAL CACTVS 3.385 "CNCc1ccc2[C@H](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[C@@H](CNC(N)=N)N(C(=O)OCC(F)(F)F)c2c1" Y2K SMILES CACTVS 3.385 "CNCc1ccc2[CH](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[CH](CNC(N)=N)N(C(=O)OCC(F)(F)F)c2c1" Y2K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@@H]1[C@H](c2ccc(cc2N1C(=O)OCC(F)(F)F)CNC)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl" Y2K SMILES "OpenEye OEToolkits" 2.0.7 "CNCc1ccc2c(c1)N(C(C2NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CNC(=N)N)C(=O)OCC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y2K "SYSTEMATIC NAME" ACDLabs 12.01 "2,2,2-trifluoroethyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate" Y2K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2,2,2-tris(fluoranyl)ethyl (2~{R},3~{S})-2-(carbamimidamidomethyl)-3-[[2-[(4-chloranyl-3-fluoranyl-phenyl)amino]-2-oxidanylidene-ethanoyl]amino]-6-(methylaminomethyl)-2,3-dihydroindole-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y2K "Create component" 2022-12-27 RCSB Y2K "Initial release" 2023-04-05 RCSB #