data_Y2P # _chem_comp.id Y2P _chem_comp.name "2-[4-[(3'R,4S)-3'-fluoro-1-[2-[(4-fluorophenyl)methyl-[(1S)-2,2,2-trifluoro-1-methyl-ethyl]amino]-2-oxo-ethyl]-2,5-dioxo-spiro[imidazolidine-4,1'-indane]-5'-yl]pyrazol-1-yl]-N-methyl-acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H27 F5 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-29 _chem_comp.pdbx_modified_date 2021-03-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 618.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y2P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LJE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y2P N1 N1 N 0 1 N N N 19.557 17.035 19.230 2.135 2.228 0.307 N1 Y2P 1 Y2P N3 N2 N 0 1 Y N N 18.776 9.871 12.670 -6.829 -0.567 -0.965 N3 Y2P 2 Y2P C4 C1 C 0 1 Y N N 21.938 20.404 20.822 3.717 -2.896 -0.408 C4 Y2P 3 Y2P C5 C2 C 0 1 Y N N 21.734 20.732 19.490 4.512 -3.794 0.280 C5 Y2P 4 Y2P C6 C3 C 0 1 Y N N 20.968 21.823 19.132 3.931 -4.792 1.038 C6 Y2P 5 Y2P C7 C4 C 0 1 Y N N 20.451 22.599 20.124 2.552 -4.893 1.110 C7 Y2P 6 Y2P C8 C5 C 0 1 Y N N 20.621 22.321 21.447 1.757 -3.993 0.421 C8 Y2P 7 Y2P C10 C6 C 0 1 N N N 21.930 17.451 19.595 3.347 0.248 -0.398 C10 Y2P 8 Y2P C13 C7 C 0 1 N N S 18.210 15.421 18.197 0.019 2.978 0.659 C13 Y2P 9 Y2P C15 C8 C 0 1 N N R 16.258 13.886 18.085 -1.879 4.205 1.456 C15 Y2P 10 Y2P C17 C9 C 0 1 Y N N 18.510 14.260 17.270 -1.238 2.232 0.301 C17 Y2P 11 Y2P C20 C10 C 0 1 Y N N 18.467 12.126 15.481 -3.795 1.240 -0.116 C20 Y2P 12 Y2P C21 C11 C 0 1 Y N N 17.364 12.379 16.299 -3.612 2.442 0.561 C21 Y2P 13 Y2P C22 C12 C 0 1 Y N N 18.370 11.101 14.420 -5.164 0.709 -0.336 C22 Y2P 14 Y2P C24 C13 C 0 1 Y N N 19.301 10.828 13.450 -5.486 -0.450 -0.981 C24 Y2P 15 Y2P C26 C14 C 0 1 N N N 19.928 7.823 11.873 -8.491 -2.269 -0.484 C26 Y2P 16 Y2P C28 C15 C 0 1 N N N 18.954 17.642 18.135 1.854 3.142 -0.631 C28 Y2P 17 Y2P N N3 N 0 1 N N N 22.926 18.229 20.108 4.416 -0.572 -0.452 N Y2P 18 Y2P C C16 C 0 1 N N N 24.854 19.360 19.019 6.045 -1.396 1.175 C Y2P 19 Y2P O O1 O 0 1 N N N 22.147 16.561 18.785 2.333 -0.038 -0.999 O Y2P 20 Y2P C1 C17 C 0 1 N N S 24.290 18.051 19.540 5.641 -0.228 0.274 C1 Y2P 21 Y2P C11 C18 C 0 1 N N N 20.505 17.707 20.079 3.413 1.519 0.409 C11 Y2P 22 Y2P C12 C19 C 0 1 N N N 19.278 15.695 19.270 1.096 2.047 1.151 C12 Y2P 23 Y2P C14 C20 C 0 1 N N N 16.881 15.019 18.853 -0.376 3.991 1.741 C14 Y2P 24 Y2P C16 C21 C 0 1 Y N N 17.389 13.450 17.184 -2.338 2.936 0.767 C16 Y2P 25 Y2P C18 C22 C 0 1 Y N N 19.632 13.984 16.502 -1.420 1.036 -0.376 C18 Y2P 26 Y2P C19 C23 C 0 1 Y N N 19.609 12.923 15.611 -2.688 0.538 -0.587 C19 Y2P 27 Y2P C2 C24 C 0 1 N N N 25.259 17.357 20.477 6.763 0.057 -0.726 C2 Y2P 28 Y2P C23 C25 C 0 1 Y N N 17.298 10.250 14.142 -6.367 1.309 0.083 C23 Y2P 29 Y2P C25 C26 C 0 1 N N N 19.407 9.213 11.537 -7.602 -1.669 -1.543 C25 Y2P 30 Y2P C27 C27 C 0 1 N N N 21.589 6.108 11.385 -10.162 -3.887 0.241 C27 Y2P 31 Y2P C3 C28 C 0 1 N N N 22.726 19.174 21.211 4.352 -1.808 -1.236 C3 Y2P 32 Y2P C9 C29 C 0 1 Y N N 21.364 21.207 21.790 2.340 -2.999 -0.342 C9 Y2P 33 Y2P F F1 F 0 1 N N N 26.361 16.987 19.820 7.895 0.510 -0.041 F Y2P 34 Y2P F1 F2 F 0 1 N N N 24.744 16.251 21.032 7.076 -1.115 -1.422 F1 Y2P 35 Y2P F2 F3 F 0 1 N N N 25.657 18.131 21.484 6.343 1.038 -1.631 F2 Y2P 36 Y2P F3 F4 F 0 1 N N N 19.750 23.700 19.780 1.983 -5.868 1.851 F3 Y2P 37 Y2P F4 F5 F 0 1 N N N 15.177 14.388 17.356 -2.062 5.308 0.615 F4 Y2P 38 Y2P N2 N4 N 0 1 Y N N 17.533 9.508 13.072 -7.357 0.544 -0.295 N2 Y2P 39 Y2P N4 N5 N 0 1 N N N 20.995 7.417 11.192 -9.298 -3.304 -0.789 N4 Y2P 40 Y2P N5 N6 N 0 1 N N N 18.171 16.721 17.539 0.611 3.648 -0.499 N5 Y2P 41 Y2P O1 O2 O 0 1 N N N 19.845 14.862 19.955 1.042 1.295 2.100 O1 Y2P 42 Y2P O2 O3 O 0 1 N N N 19.377 7.115 12.711 -8.479 -1.820 0.643 O2 Y2P 43 Y2P O3 O4 O 0 1 N N N 19.208 18.765 17.735 2.631 3.477 -1.503 O3 Y2P 44 Y2P H1 H1 H 0 1 N N N 22.182 20.123 18.719 5.588 -3.715 0.223 H1 Y2P 45 Y2P H2 H2 H 0 1 N N N 20.784 22.055 18.093 4.552 -5.493 1.575 H2 Y2P 46 Y2P H3 H3 H 0 1 N N N 20.187 22.954 22.207 0.681 -4.071 0.475 H3 Y2P 47 Y2P H4 H4 H 0 1 N N N 15.965 13.070 18.762 -2.425 4.347 2.389 H4 Y2P 48 Y2P H5 H5 H 0 1 N N N 16.493 11.743 16.244 -4.467 2.989 0.928 H5 Y2P 49 Y2P H6 H6 H 0 1 N N N 20.269 11.293 13.336 -4.790 -1.148 -1.424 H6 Y2P 50 Y2P H7 H7 H 0 1 N N N 25.860 19.189 18.608 6.367 -2.236 0.559 H7 Y2P 51 Y2P H8 H8 H 0 1 N N N 24.198 19.753 18.229 6.865 -1.087 1.824 H8 Y2P 52 Y2P H9 H9 H 0 1 N N N 24.913 20.087 19.842 5.193 -1.698 1.784 H9 Y2P 53 Y2P H10 H10 H 0 1 N N N 24.182 17.393 18.665 5.464 0.658 0.884 H10 Y2P 54 Y2P H11 H11 H 0 1 N N N 20.305 18.788 20.060 4.212 2.152 0.024 H11 Y2P 55 Y2P H12 H12 H 0 1 N N N 20.399 17.332 21.108 3.612 1.277 1.453 H12 Y2P 56 Y2P H13 H13 H 0 1 N N N 16.197 15.881 18.852 -0.225 3.574 2.737 H13 Y2P 57 Y2P H14 H14 H 0 1 N N N 17.067 14.700 19.889 0.178 4.923 1.622 H14 Y2P 58 Y2P H15 H15 H 0 1 N N N 20.519 14.593 16.598 -0.562 0.492 -0.742 H15 Y2P 59 Y2P H16 H16 H 0 1 N N N 20.481 12.709 15.011 -2.823 -0.394 -1.115 H16 Y2P 60 Y2P H17 H17 H 0 1 N N N 16.391 10.203 14.727 -6.457 2.240 0.623 H17 Y2P 61 Y2P H18 H18 H 0 1 N N N 20.251 9.831 11.198 -8.215 -1.292 -2.362 H18 Y2P 62 Y2P H19 H19 H 0 1 N N N 18.668 9.124 10.727 -6.921 -2.432 -1.921 H19 Y2P 63 Y2P H20 H20 H 0 1 N N N 22.456 5.996 10.717 -9.549 -4.263 1.059 H20 Y2P 64 Y2P H21 H21 H 0 1 N N N 21.916 6.004 12.430 -10.843 -3.124 0.618 H21 Y2P 65 Y2P H22 H22 H 0 1 N N N 20.846 5.331 11.155 -10.738 -4.706 -0.189 H22 Y2P 66 Y2P H23 H23 H 0 1 N N N 22.186 18.657 22.018 5.359 -2.110 -1.521 H23 Y2P 67 Y2P H24 H24 H 0 1 N N N 23.713 19.495 21.577 3.756 -1.639 -2.132 H24 Y2P 68 Y2P H25 H25 H 0 1 N N N 21.498 20.960 22.833 1.720 -2.299 -0.882 H25 Y2P 69 Y2P H26 H26 H 0 1 N N N 21.403 8.037 10.522 -9.307 -3.662 -1.690 H26 Y2P 70 Y2P H27 H27 H 0 1 N N N 17.619 16.910 16.727 0.192 4.319 -1.061 H27 Y2P 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y2P N4 C27 SING N N 1 Y2P N4 C26 SING N N 2 Y2P C25 C26 SING N N 3 Y2P C25 N3 SING N N 4 Y2P C26 O2 DOUB N N 5 Y2P N3 N2 SING Y N 6 Y2P N3 C24 SING Y N 7 Y2P N2 C23 DOUB Y N 8 Y2P C24 C22 DOUB Y N 9 Y2P C23 C22 SING Y N 10 Y2P C22 C20 SING N N 11 Y2P C20 C19 DOUB Y N 12 Y2P C20 C21 SING Y N 13 Y2P C19 C18 SING Y N 14 Y2P C21 C16 DOUB Y N 15 Y2P C18 C17 DOUB Y N 16 Y2P C16 C17 SING Y N 17 Y2P C16 C15 SING N N 18 Y2P C17 C13 SING N N 19 Y2P F4 C15 SING N N 20 Y2P N5 C28 SING N N 21 Y2P N5 C13 SING N N 22 Y2P O3 C28 DOUB N N 23 Y2P C15 C14 SING N N 24 Y2P C28 N1 SING N N 25 Y2P C13 C14 SING N N 26 Y2P C13 C12 SING N N 27 Y2P O C10 DOUB N N 28 Y2P C C1 SING N N 29 Y2P C6 C5 DOUB Y N 30 Y2P C6 C7 SING Y N 31 Y2P N1 C12 SING N N 32 Y2P N1 C11 SING N N 33 Y2P C12 O1 DOUB N N 34 Y2P C5 C4 SING Y N 35 Y2P C1 N SING N N 36 Y2P C1 C2 SING N N 37 Y2P C10 C11 SING N N 38 Y2P C10 N SING N N 39 Y2P F3 C7 SING N N 40 Y2P F C2 SING N N 41 Y2P N C3 SING N N 42 Y2P C7 C8 DOUB Y N 43 Y2P C2 F1 SING N N 44 Y2P C2 F2 SING N N 45 Y2P C4 C3 SING N N 46 Y2P C4 C9 DOUB Y N 47 Y2P C8 C9 SING Y N 48 Y2P C5 H1 SING N N 49 Y2P C6 H2 SING N N 50 Y2P C8 H3 SING N N 51 Y2P C15 H4 SING N N 52 Y2P C21 H5 SING N N 53 Y2P C24 H6 SING N N 54 Y2P C H7 SING N N 55 Y2P C H8 SING N N 56 Y2P C H9 SING N N 57 Y2P C1 H10 SING N N 58 Y2P C11 H11 SING N N 59 Y2P C11 H12 SING N N 60 Y2P C14 H13 SING N N 61 Y2P C14 H14 SING N N 62 Y2P C18 H15 SING N N 63 Y2P C19 H16 SING N N 64 Y2P C23 H17 SING N N 65 Y2P C25 H18 SING N N 66 Y2P C25 H19 SING N N 67 Y2P C27 H20 SING N N 68 Y2P C27 H21 SING N N 69 Y2P C27 H22 SING N N 70 Y2P C3 H23 SING N N 71 Y2P C3 H24 SING N N 72 Y2P C9 H25 SING N N 73 Y2P N4 H26 SING N N 74 Y2P N5 H27 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y2P SMILES ACDLabs 12.01 "N4(C(C1(CC(c2c1ccc(c2)c3cn(nc3)CC(=O)NC)F)NC4=O)=O)CC(N(Cc5ccc(cc5)F)C(C)C(F)(F)F)=O" Y2P InChI InChI 1.03 "InChI=1S/C29H27F5N6O4/c1-16(29(32,33)34)39(12-17-3-6-20(30)7-4-17)25(42)15-40-26(43)28(37-27(40)44)10-23(31)21-9-18(5-8-22(21)28)19-11-36-38(13-19)14-24(41)35-2/h3-9,11,13,16,23H,10,12,14-15H2,1-2H3,(H,35,41)(H,37,44)/t16-,23+,28-/m0/s1" Y2P InChIKey InChI 1.03 SWXCHCQCWFXILM-DAXQEMQKSA-N Y2P SMILES_CANONICAL CACTVS 3.385 "CNC(=O)Cn1cc(cn1)c2ccc3c(c2)[C@H](F)C[C@]34NC(=O)N(CC(=O)N(Cc5ccc(F)cc5)[C@@H](C)C(F)(F)F)C4=O" Y2P SMILES CACTVS 3.385 "CNC(=O)Cn1cc(cn1)c2ccc3c(c2)[CH](F)C[C]34NC(=O)N(CC(=O)N(Cc5ccc(F)cc5)[CH](C)C(F)(F)F)C4=O" Y2P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(F)(F)F)N(Cc1ccc(cc1)F)C(=O)CN2C(=O)[C@@]3(C[C@H](c4c3ccc(c4)c5cnn(c5)CC(=O)NC)F)NC2=O" Y2P SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(F)(F)F)N(Cc1ccc(cc1)F)C(=O)CN2C(=O)C3(CC(c4c3ccc(c4)c5cnn(c5)CC(=O)NC)F)NC2=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y2P "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(3'R,4S)-3'-fluoro-5'-{1-[2-(methylamino)-2-oxoethyl]-1H-pyrazol-4-yl}-2,5-dioxo-2',3'-dihydro-1H-spiro[imidazolidine-4,1'-inden]-1-yl]-N-[(4-fluorophenyl)methyl]-N-[(2S)-1,1,1-trifluoropropan-2-yl]acetamide" Y2P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[4-[(1~{S},3~{R})-3-fluoranyl-1'-[2-[(4-fluorophenyl)methyl-[(2~{S})-1,1,1-tris(fluoranyl)propan-2-yl]amino]-2-oxidanylidene-ethyl]-2',5'-bis(oxidanylidene)spiro[2,3-dihydroindene-1,4'-imidazolidine]-5-yl]pyrazol-1-yl]-~{N}-methyl-ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y2P "Create component" 2021-01-29 RCSB Y2P "Modify name" 2021-02-05 RCSB Y2P "Initial release" 2021-03-17 RCSB ##