data_Y2Q
#
_chem_comp.id Y2Q
_chem_comp.name "(1H-benzotriazol-5-yl)[(3aR,5r,6aS)-5-[2-(3,5-dichlorophenyl)ethanesulfonyl]hexahydrocyclopenta[c]pyrrol-2(1H)-yl]methanone"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H22 Cl2 N4 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-06-09
_chem_comp.pdbx_modified_date 2024-12-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 493.406
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y2Q
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7G4I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y2Q C01 C1 C 0 1 Y N N N N N -8.981 12.390 54.380 5.621 0.915 0.073 C01 Y2Q 1
Y2Q C02 C2 C 0 1 Y N N N N N -8.600 11.073 54.485 5.707 -0.175 -0.804 C02 Y2Q 2
Y2Q C04 C3 C 0 1 Y N N N N N -8.063 13.445 54.602 6.773 1.565 0.498 C04 Y2Q 3
Y2Q C05 C4 C 0 1 Y N N N N N -6.768 13.167 54.931 8.020 1.124 0.046 C05 Y2Q 4
Y2Q C06 C5 C 0 1 Y N N N N N -6.375 11.870 55.050 8.087 0.028 -0.835 C06 Y2Q 5
Y2Q N09 N1 N 0 1 Y N N N N N -5.690 13.995 55.192 9.288 1.542 0.276 N09 Y2Q 6
Y2Q C10 C6 C 0 1 N N N N N N -10.392 12.790 54.056 4.300 1.379 0.543 C10 Y2Q 7
Y2Q O12 O1 O 0 1 N N N N N N -10.957 13.542 54.774 4.156 2.527 0.917 O12 Y2Q 8
Y2Q C13 C7 C 0 1 N N N N N N -12.568 12.617 52.411 3.277 -0.913 0.254 C13 Y2Q 9
Y2Q C15 C8 C 0 1 N N S N N N -11.297 11.528 50.462 1.374 -0.366 1.700 C15 Y2Q 10
Y2Q C16 C9 C 0 1 N N R N N N -12.644 12.232 50.861 2.089 -1.553 0.997 C16 Y2Q 11
Y2Q C17 C10 C 0 1 N N N N N N -13.844 11.461 50.019 1.097 -2.108 -0.041 C17 Y2Q 12
Y2Q C18 C11 C 0 1 N N N N N N -13.164 10.115 49.593 -0.147 -1.199 0.004 C18 Y2Q 13
Y2Q C19 C12 C 0 1 N N N N N N -11.591 10.558 49.234 -0.129 -0.602 1.432 C19 Y2Q 14
Y2Q C21 C13 C 0 1 N N N N N N -12.860 8.110 47.658 -2.945 -0.901 -0.161 C21 Y2Q 15
Y2Q C22 C14 C 0 1 N N N N N N -13.615 6.997 46.989 -4.316 -1.549 -0.362 C22 Y2Q 16
Y2Q C23 C15 C 0 1 Y N N N N N -12.703 6.519 45.880 -5.387 -0.492 -0.282 C23 Y2Q 17
Y2Q C24 C16 C 0 1 Y N N N N N -12.230 7.408 44.956 -5.790 0.172 -1.425 C24 Y2Q 18
Y2Q C25 C17 C 0 1 Y N N N N N -11.326 6.972 43.893 -6.773 1.142 -1.352 C25 Y2Q 19
Y2Q C26 C18 C 0 1 Y N N N N N -10.957 5.690 43.825 -7.354 1.447 -0.134 C26 Y2Q 20
Y2Q C27 C19 C 0 1 Y N N N N N -11.430 4.827 44.763 -6.951 0.782 1.010 C27 Y2Q 21
Y2Q C28 C20 C 0 1 Y N N N N N -12.334 5.226 45.832 -5.971 -0.191 0.935 C28 Y2Q 22
Y2Q C03 C21 C 0 1 Y N N N N N -7.301 10.799 54.811 6.920 -0.609 -1.249 C03 Y2Q 23
Y2Q N07 N2 N 0 1 Y N N N N N -5.057 11.881 55.369 9.420 -0.167 -1.098 N07 Y2Q 24
Y2Q N08 N3 N 0 1 Y N N N N N -4.637 13.202 55.461 10.120 0.809 -0.376 N08 Y2Q 25
Y2Q N11 N4 N 0 1 N N N N N N -11.092 12.249 52.853 3.253 0.530 0.556 N11 Y2Q 26
Y2Q C14 C22 C 0 1 N N N N N N -10.493 11.241 51.798 1.844 0.856 0.877 C14 Y2Q 27
Y2Q S20 S1 S 0 1 N N N N N N -13.952 9.261 48.304 -1.655 -2.173 -0.257 S20 Y2Q 28
Y2Q O29 O2 O 0 1 N N N N N N -15.157 8.548 48.791 -1.633 -2.696 -1.578 O29 Y2Q 29
Y2Q O30 O3 O 0 1 N N N N N N -14.243 10.281 47.285 -1.814 -3.064 0.839 O30 Y2Q 30
Y2Q CL33 CL1 CL 0 0 N N N N N N -10.726 8.118 42.724 -7.278 1.977 -2.788 CL33 Y2Q 31
Y2Q CL34 CL2 CL 0 0 N N N N N N -10.964 3.207 44.697 -7.680 1.165 2.539 CL34 Y2Q 32
Y2Q H35 H1 H 0 1 N N N N N N -9.308 10.276 54.314 4.806 -0.674 -1.129 H35 Y2Q 33
Y2Q H37 H2 H 0 1 N N N N N N -8.388 14.471 54.511 6.706 2.405 1.174 H37 Y2Q 34
Y2Q H39 H3 H 0 1 N N N N N N -13.301 12.036 52.990 4.212 -1.349 0.604 H39 Y2Q 35
Y2Q H40 H4 H 0 1 N N N N N N -12.757 13.691 52.552 3.172 -1.071 -0.819 H40 Y2Q 36
Y2Q H31 H5 H 0 1 N N N N N N -10.720 12.342 49.998 1.609 -0.293 2.761 H31 Y2Q 37
Y2Q H32 H6 H 0 1 N N N N N N -12.582 13.207 50.356 2.416 -2.311 1.709 H32 Y2Q 38
Y2Q H43 H7 H 0 1 N N N N N N -14.720 11.277 50.658 1.543 -2.080 -1.035 H43 Y2Q 39
Y2Q H44 H8 H 0 1 N N N N N N -14.149 12.046 49.139 0.822 -3.131 0.217 H44 Y2Q 40
Y2Q H45 H9 H 0 1 N N N N N N -13.133 9.438 50.459 -0.069 -0.408 -0.741 H45 Y2Q 41
Y2Q H47 H10 H 0 1 N N N N N N -11.524 11.085 48.271 -0.541 -1.311 2.150 H47 Y2Q 42
Y2Q H46 H11 H 0 1 N N N N N N -10.914 9.691 49.226 -0.677 0.340 1.462 H46 Y2Q 43
Y2Q H49 H12 H 0 1 N N N N N N -12.208 8.601 46.921 -2.778 -0.155 -0.937 H49 Y2Q 44
Y2Q H48 H13 H 0 1 N N N N N N -12.246 7.695 48.471 -2.909 -0.422 0.818 H48 Y2Q 45
Y2Q H50 H14 H 0 1 N N N N N N -13.817 6.184 47.701 -4.351 -2.028 -1.340 H50 Y2Q 46
Y2Q H51 H15 H 0 1 N N N N N N -14.565 7.367 46.576 -4.483 -2.295 0.415 H51 Y2Q 47
Y2Q H52 H16 H 0 1 N N N N N N -12.528 8.445 45.012 -5.336 -0.067 -2.376 H52 Y2Q 48
Y2Q H53 H17 H 0 1 N N N N N N -10.297 5.347 43.042 -8.122 2.205 -0.077 H53 Y2Q 49
Y2Q H54 H18 H 0 1 N N N N N N -12.694 4.512 46.558 -5.659 -0.714 1.827 H54 Y2Q 50
Y2Q H36 H19 H 0 1 N N N N N N -6.970 9.774 54.889 6.977 -1.450 -1.925 H36 Y2Q 51
Y2Q H38 H20 H 0 1 N N N N N N -4.484 11.074 55.514 9.803 -0.848 -1.673 H38 Y2Q 52
Y2Q H42 H21 H 0 1 N N N N N N -9.419 11.427 51.651 1.256 0.955 -0.035 H42 Y2Q 53
Y2Q H41 H22 H 0 1 N N N N N N -10.644 10.202 52.126 1.787 1.766 1.474 H41 Y2Q 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y2Q C01 C02 DOUB Y N 1
Y2Q C02 C03 SING Y N 2
Y2Q C01 C04 SING Y N 3
Y2Q C04 C05 DOUB Y N 4
Y2Q C03 C06 DOUB Y N 5
Y2Q C05 C06 SING Y N 6
Y2Q C06 N07 SING Y N 7
Y2Q N07 N08 SING Y N 8
Y2Q C05 N09 SING Y N 9
Y2Q N08 N09 DOUB Y N 10
Y2Q C01 C10 SING N N 11
Y2Q C10 N11 SING N N 12
Y2Q C10 O12 DOUB N N 13
Y2Q N11 C13 SING N N 14
Y2Q N11 C14 SING N N 15
Y2Q C14 C15 SING N N 16
Y2Q C13 C16 SING N N 17
Y2Q C15 C16 SING N N 18
Y2Q C16 C17 SING N N 19
Y2Q C17 C18 SING N N 20
Y2Q C15 C19 SING N N 21
Y2Q C18 C19 SING N N 22
Y2Q C18 S20 SING N N 23
Y2Q S20 C21 SING N N 24
Y2Q C21 C22 SING N N 25
Y2Q C22 C23 SING N N 26
Y2Q C23 C24 DOUB Y N 27
Y2Q C24 C25 SING Y N 28
Y2Q C25 C26 DOUB Y N 29
Y2Q C26 C27 SING Y N 30
Y2Q C23 C28 SING Y N 31
Y2Q C27 C28 DOUB Y N 32
Y2Q S20 O29 DOUB N N 33
Y2Q S20 O30 DOUB N N 34
Y2Q C25 CL33 SING N N 35
Y2Q C27 CL34 SING N N 36
Y2Q C02 H35 SING N N 37
Y2Q C04 H37 SING N N 38
Y2Q C13 H39 SING N N 39
Y2Q C13 H40 SING N N 40
Y2Q C15 H31 SING N N 41
Y2Q C16 H32 SING N N 42
Y2Q C17 H43 SING N N 43
Y2Q C17 H44 SING N N 44
Y2Q C18 H45 SING N N 45
Y2Q C19 H47 SING N N 46
Y2Q C19 H46 SING N N 47
Y2Q C21 H49 SING N N 48
Y2Q C21 H48 SING N N 49
Y2Q C22 H50 SING N N 50
Y2Q C22 H51 SING N N 51
Y2Q C24 H52 SING N N 52
Y2Q C26 H53 SING N N 53
Y2Q C28 H54 SING N N 54
Y2Q C03 H36 SING N N 55
Y2Q N07 H38 SING N N 56
Y2Q C14 H42 SING N N 57
Y2Q C14 H41 SING N N 58
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y2Q SMILES ACDLabs 12.01 "Clc1cc(cc(Cl)c1)CCS(=O)(=O)C1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1"
Y2Q InChI InChI 1.06 "InChI=1S/C22H22Cl2N4O3S/c23-17-5-13(6-18(24)10-17)3-4-32(30,31)19-7-15-11-28(12-16(15)8-19)22(29)14-1-2-20-21(9-14)26-27-25-20/h1-2,5-6,9-10,15-16,19H,3-4,7-8,11-12H2,(H,25,26,27)"
Y2Q InChIKey InChI 1.06 WHPLZWPELMTYQP-UHFFFAOYSA-N
Y2Q SMILES_CANONICAL CACTVS 3.385 "Clc1cc(Cl)cc(CC[S](=O)(=O)C2C[C@H]3CN(C[C@H]3C2)C(=O)c4ccc5[nH]nnc5c4)c1"
Y2Q SMILES CACTVS 3.385 "Clc1cc(Cl)cc(CC[S](=O)(=O)C2C[CH]3CN(C[CH]3C2)C(=O)c4ccc5[nH]nnc5c4)c1"
Y2Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@H]4CC(C[C@H]4C3)S(=O)(=O)CCc5cc(cc(c5)Cl)Cl)nn[nH]2"
Y2Q SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4CC(CC4C3)S(=O)(=O)CCc5cc(cc(c5)Cl)Cl)nn[nH]2"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y2Q "SYSTEMATIC NAME" ACDLabs 12.01 "(1H-benzotriazol-5-yl)[(3aR,5r,6aS)-5-[2-(3,5-dichlorophenyl)ethanesulfonyl]hexahydrocyclopenta[c]pyrrol-2(1H)-yl]methanone"
Y2Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},6~{a}~{R})-5-[2-[3,5-bis(chloranyl)phenyl]ethylsulfonyl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrol-2-yl]-(1~{H}-benzotriazol-5-yl)methanone"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y2Q "Create component" 2023-06-09 RCSB
Y2Q "Initial release" 2024-12-18 RCSB
#