data_Y2R # _chem_comp.id Y2R _chem_comp.name "N-{(1R)-1-[(3P,5P)-3-[5-(aminomethyl)thiophen-2-yl]-5-(thiophen-2-yl)phenyl]ethyl}-5-[2-(dimethylamino)ethoxy]-2-methylbenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H33 N3 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-14 _chem_comp.pdbx_modified_date 2024-03-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 519.721 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y2R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UUY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y2R C1 C1 C 0 1 N N N N N N 46.841 32.565 1.333 3.157 5.161 0.396 C1 Y2R 1 Y2R C2 C2 C 0 1 Y N N N N N 48.011 33.426 0.930 3.708 3.772 0.204 C2 Y2R 2 Y2R C3 C3 C 0 1 Y N N N N N 47.927 34.809 1.070 5.037 3.597 -0.123 C3 Y2R 3 Y2R C4 C4 C 0 1 Y N N N N N 48.971 35.645 0.720 5.548 2.324 -0.301 C4 Y2R 4 Y2R C5 C5 C 0 1 Y N N N N N 50.137 35.103 0.215 4.727 1.214 -0.150 C5 Y2R 5 Y2R C7 C6 C 0 1 N N N N N N 52.382 35.367 -0.604 6.620 -0.130 -0.663 C7 Y2R 6 Y2R C8 C7 C 0 1 N N N N N N 53.179 36.497 -1.189 7.006 -1.602 -0.819 C8 Y2R 7 Y2R C10 C8 C 0 1 N N N N N N 54.260 36.480 1.042 6.792 -1.775 -3.224 C10 Y2R 8 Y2R C11 C9 C 0 1 N N N N N N 53.276 38.550 0.183 6.210 -3.658 -1.819 C11 Y2R 9 Y2R C12 C10 C 0 1 Y N N N N N 50.259 33.731 0.061 3.392 1.379 0.177 C12 Y2R 10 Y2R C13 C11 C 0 1 Y N N N N N 49.201 32.886 0.414 2.877 2.662 0.363 C13 Y2R 11 Y2R C14 C12 C 0 1 N N N N N N 49.340 31.411 0.197 1.452 2.846 0.713 C14 Y2R 12 Y2R C17 C13 C 0 1 N N R N N N 50.302 29.289 0.961 -0.737 1.956 1.304 C17 Y2R 13 Y2R C18 C14 C 0 1 N N N N N N 50.696 28.734 2.325 -0.864 2.206 2.808 C18 Y2R 14 Y2R C19 C15 C 0 1 Y N N N N N 51.311 28.930 -0.115 -1.510 0.716 0.934 C19 Y2R 15 Y2R C20 C16 C 0 1 Y N N N N N 50.944 28.148 -1.204 -0.957 -0.530 1.155 C20 Y2R 16 Y2R C21 C17 C 0 1 Y N N N N N 51.868 27.801 -2.185 -1.668 -1.683 0.814 C21 Y2R 17 Y2R C22 C18 C 0 1 Y N N N N N 51.457 26.962 -3.320 -1.074 -3.016 1.050 C22 Y2R 18 Y2R C23 C19 C 0 1 Y N N N N N 52.227 26.518 -4.379 -1.664 -4.193 0.762 C23 Y2R 19 Y2R C24 C20 C 0 1 Y N N N N N 51.485 25.715 -5.293 -0.912 -5.307 1.074 C24 Y2R 20 Y2R C25 C21 C 0 1 Y N N N N N 50.199 25.568 -4.919 0.284 -5.050 1.613 C25 Y2R 21 Y2R C27 C22 C 0 1 Y N N N N N 53.182 28.246 -2.078 -2.937 -1.574 0.251 C27 Y2R 22 Y2R C28 C23 C 0 1 Y N N N N N 53.567 29.031 -0.994 -3.489 -0.314 0.031 C28 Y2R 23 Y2R C29 C24 C 0 1 Y N N N N N 54.948 29.525 -0.890 -4.836 -0.189 -0.566 C29 Y2R 24 Y2R C30 C25 C 0 1 Y N N N N N 55.535 30.235 0.138 -5.622 -1.219 -0.937 C30 Y2R 25 Y2R C31 C26 C 0 1 Y N N N N N 56.878 30.569 -0.110 -6.840 -0.853 -1.472 C31 Y2R 26 Y2R C32 C27 C 0 1 Y N N N N N 57.338 30.120 -1.329 -7.055 0.465 -1.539 C32 Y2R 27 Y2R C33 C28 C 0 1 N N N N N N 58.682 30.297 -1.905 -8.303 1.112 -2.080 C33 Y2R 28 Y2R C36 C29 C 0 1 Y N N N N N 52.628 29.366 -0.022 -2.770 0.831 0.382 C36 Y2R 29 Y2R N16 N1 N 0 1 N N N N N N 50.105 30.738 1.066 0.674 1.773 0.957 N16 Y2R 30 Y2R N34 N2 N 0 1 N N N N N N 58.968 29.271 -2.930 -9.271 1.296 -0.990 N34 Y2R 31 Y2R N9 N3 N 0 1 N N N N N N 53.958 37.277 -0.178 6.245 -2.194 -1.927 N9 Y2R 32 Y2R O15 O1 O 0 1 N N N N N N 48.771 30.856 -0.740 0.983 3.966 0.781 O15 Y2R 33 Y2R O6 O2 O 0 1 N N N N N N 51.160 35.948 -0.129 5.235 -0.034 -0.326 O6 Y2R 34 Y2R S26 S1 S 0 1 Y N N N N N 49.849 26.386 -3.469 0.515 -3.311 1.744 S26 Y2R 35 Y2R S35 S2 S 0 1 Y N N N N N 56.087 29.274 -2.173 -5.665 1.328 -0.894 S35 Y2R 36 Y2R H1B H1 H 0 1 N N N N N N 46.172 32.428 0.471 2.670 5.489 -0.523 H1B Y2R 37 Y2R H1C H2 H 0 1 N N N N N N 47.207 31.585 1.672 2.431 5.155 1.209 H1C Y2R 38 Y2R H1A H3 H 0 1 N N N N N N 46.291 33.054 2.150 3.970 5.845 0.640 H1A Y2R 39 Y2R H3 H4 H 0 1 N N N N N N 47.019 35.241 1.464 5.681 4.456 -0.242 H3 Y2R 40 Y2R H4 H5 H 0 1 N N N N N N 48.876 36.714 0.841 6.589 2.193 -0.557 H4 Y2R 41 Y2R H7A H6 H 0 1 N N N N N N 52.932 34.902 0.227 7.219 0.321 0.128 H7A Y2R 42 Y2R H7B H7 H 0 1 N N N N N N 52.171 34.610 -1.374 6.803 0.395 -1.601 H7B Y2R 43 Y2R H8A H8 H 0 1 N N N N N N 53.884 36.080 -1.923 8.073 -1.678 -1.030 H8A Y2R 44 Y2R H8B H9 H 0 1 N N N N N N 52.485 37.184 -1.696 6.780 -2.137 0.104 H8B Y2R 45 Y2R H10B H10 H 0 0 N N N N N N 54.832 37.097 1.751 7.830 -2.097 -3.302 H10B Y2R 46 Y2R H10A H11 H 0 0 N N N N N N 53.319 36.158 1.512 6.210 -2.227 -4.027 H10A Y2R 47 Y2R H10C H12 H 0 0 N N N N N N 54.852 35.596 0.765 6.742 -0.689 -3.306 H10C Y2R 48 Y2R H11B H13 H 0 0 N N N N N N 53.879 39.092 0.926 5.813 -3.941 -0.844 H11B Y2R 49 Y2R H11C H14 H 0 0 N N N N N N 53.159 39.171 -0.717 5.572 -4.065 -2.603 H11C Y2R 50 Y2R H11A H15 H 0 0 N N N N N N 52.285 38.328 0.607 7.219 -4.055 -1.929 H11A Y2R 51 Y2R H12 H16 H 0 1 N N N N N N 51.174 33.313 -0.333 2.753 0.517 0.294 H12 Y2R 52 Y2R H17 H17 H 0 1 N N N N N N 49.342 28.831 0.682 -1.138 2.810 0.759 H17 Y2R 53 Y2R H18C H18 H 0 0 N N N N N N 50.845 27.647 2.250 -0.463 1.352 3.354 H18C Y2R 54 Y2R H18B H19 H 0 0 N N N N N N 51.630 29.210 2.658 -0.305 3.103 3.076 H18B Y2R 55 Y2R H18A H20 H 0 0 N N N N N N 49.897 28.946 3.051 -1.914 2.342 3.067 H18A Y2R 56 Y2R H20 H21 H 0 1 N N N N N N 49.924 27.804 -1.290 0.027 -0.613 1.591 H20 Y2R 57 Y2R H23 H22 H 0 1 N N N N N N 53.274 26.753 -4.500 -2.648 -4.259 0.323 H23 Y2R 58 Y2R H24 H23 H 0 1 N N N N N N 51.906 25.274 -6.185 -1.264 -6.312 0.897 H24 Y2R 59 Y2R H25 H24 H 0 1 N N N N N N 49.473 24.996 -5.477 1.002 -5.797 1.917 H25 Y2R 60 Y2R H27 H25 H 0 1 N N N N N N 53.904 27.982 -2.836 -3.490 -2.463 -0.015 H27 Y2R 61 Y2R H30 H26 H 0 1 N N N N N N 55.014 30.507 1.044 -5.321 -2.250 -0.826 H30 Y2R 62 Y2R H31 H27 H 0 1 N N N N N N 57.489 31.123 0.587 -7.565 -1.577 -1.811 H31 Y2R 63 Y2R H33B H28 H 0 0 N N N N N N 58.745 31.293 -2.368 -8.052 2.082 -2.510 H33B Y2R 64 Y2R H33A H29 H 0 0 N N N N N N 59.429 30.218 -1.101 -8.739 0.475 -2.849 H33A Y2R 65 Y2R H36 H30 H 0 1 N N N N N N 52.928 29.975 0.818 -3.197 1.809 0.212 H36 Y2R 66 Y2R H16 H31 H 0 1 N N N N N N 50.554 31.237 1.807 1.049 0.880 0.902 H16 Y2R 67 Y2R H34B H32 H 0 0 N N N N N N 59.885 29.417 -3.302 -8.868 1.830 -0.234 H34B Y2R 68 Y2R H34C H33 H 0 0 N N N N N N 58.917 28.362 -2.515 -10.118 1.729 -1.327 H34C Y2R 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y2R C1 C2 SING N N 1 Y2R C2 C3 DOUB Y N 2 Y2R C3 C4 SING Y N 3 Y2R C4 C5 DOUB Y N 4 Y2R C5 O6 SING N N 5 Y2R O6 C7 SING N N 6 Y2R C7 C8 SING N N 7 Y2R C8 N9 SING N N 8 Y2R N9 C10 SING N N 9 Y2R N9 C11 SING N N 10 Y2R C5 C12 SING Y N 11 Y2R C12 C13 DOUB Y N 12 Y2R C13 C14 SING N N 13 Y2R C14 O15 DOUB N N 14 Y2R C14 N16 SING N N 15 Y2R N16 C17 SING N N 16 Y2R C17 C18 SING N N 17 Y2R C17 C19 SING N N 18 Y2R C19 C20 DOUB Y N 19 Y2R C20 C21 SING Y N 20 Y2R C21 C22 SING N N 21 Y2R C22 C23 DOUB Y N 22 Y2R C23 C24 SING Y N 23 Y2R C24 C25 DOUB Y N 24 Y2R C25 S26 SING Y N 25 Y2R C21 C27 DOUB Y N 26 Y2R C27 C28 SING Y N 27 Y2R C28 C29 SING N N 28 Y2R C29 C30 DOUB Y N 29 Y2R C30 C31 SING Y N 30 Y2R C31 C32 DOUB Y N 31 Y2R C32 C33 SING N N 32 Y2R C33 N34 SING N N 33 Y2R C32 S35 SING Y N 34 Y2R C28 C36 DOUB Y N 35 Y2R C13 C2 SING Y N 36 Y2R C36 C19 SING Y N 37 Y2R S26 C22 SING Y N 38 Y2R S35 C29 SING Y N 39 Y2R C1 H1B SING N N 40 Y2R C1 H1C SING N N 41 Y2R C1 H1A SING N N 42 Y2R C3 H3 SING N N 43 Y2R C4 H4 SING N N 44 Y2R C7 H7A SING N N 45 Y2R C7 H7B SING N N 46 Y2R C8 H8A SING N N 47 Y2R C8 H8B SING N N 48 Y2R C10 H10B SING N N 49 Y2R C10 H10A SING N N 50 Y2R C10 H10C SING N N 51 Y2R C11 H11B SING N N 52 Y2R C11 H11C SING N N 53 Y2R C11 H11A SING N N 54 Y2R C12 H12 SING N N 55 Y2R C17 H17 SING N N 56 Y2R C18 H18C SING N N 57 Y2R C18 H18B SING N N 58 Y2R C18 H18A SING N N 59 Y2R C20 H20 SING N N 60 Y2R C23 H23 SING N N 61 Y2R C24 H24 SING N N 62 Y2R C25 H25 SING N N 63 Y2R C27 H27 SING N N 64 Y2R C30 H30 SING N N 65 Y2R C31 H31 SING N N 66 Y2R C33 H33B SING N N 67 Y2R C33 H33A SING N N 68 Y2R C36 H36 SING N N 69 Y2R N16 H16 SING N N 70 Y2R N34 H34B SING N N 71 Y2R N34 H34C SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y2R SMILES ACDLabs 12.01 "NCc1ccc(s1)c1cc(cc(c1)c1cccs1)C(C)NC(=O)c1cc(OCCN(C)C)ccc1C" Y2R InChI InChI 1.06 "InChI=1S/C29H33N3O2S2/c1-19-7-8-24(34-12-11-32(3)4)17-26(19)29(33)31-20(2)21-14-22(27-6-5-13-35-27)16-23(15-21)28-10-9-25(18-30)36-28/h5-10,13-17,20H,11-12,18,30H2,1-4H3,(H,31,33)" Y2R InChIKey InChI 1.06 LNRHXFDDRMUVPS-UHFFFAOYSA-N Y2R SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)c1cc(OCCN(C)C)ccc1C)c2cc(cc(c2)c3sc(CN)cc3)c4sccc4" Y2R SMILES CACTVS 3.385 "C[CH](NC(=O)c1cc(OCCN(C)C)ccc1C)c2cc(cc(c2)c3sc(CN)cc3)c4sccc4" Y2R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)N[C@H](C)c2cc(cc(c2)c3ccc(s3)CN)c4cccs4)OCCN(C)C" Y2R SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC(C)c2cc(cc(c2)c3ccc(s3)CN)c4cccs4)OCCN(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y2R "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(1R)-1-[(3P,5P)-3-[5-(aminomethyl)thiophen-2-yl]-5-(thiophen-2-yl)phenyl]ethyl}-5-[2-(dimethylamino)ethoxy]-2-methylbenzamide" Y2R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{R})-1-[3-[5-(aminomethyl)thiophen-2-yl]-5-thiophen-2-yl-phenyl]ethyl]-5-[2-(dimethylamino)ethoxy]-2-methyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y2R "Create component" 2023-11-14 RCSB Y2R "Initial release" 2024-04-03 RCSB #