data_Y2S
#
_chem_comp.id Y2S
_chem_comp.name "5-methoxy-N-({3-[2-(methylamino)-2-oxoethyl]phenyl}methyl)-4-{(E)-2-[trans-4-(trifluoromethyl)cyclohexyl]ethenyl}pyridine-2-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H30 F3 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-01
_chem_comp.pdbx_modified_date 2023-08-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 489.530
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y2S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LJQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y2S C14 C1 C 0 1 N N N -32.163 7.431 22.161 -1.552 0.054 -0.712 C14 Y2S 1
Y2S C5 C2 C 0 1 N N N -31.393 0.636 23.078 -8.142 0.133 1.093 C5 Y2S 2
Y2S C6 C3 C 0 1 Y N N -31.924 2.010 22.737 -7.283 0.024 -0.140 C6 Y2S 3
Y2S C11 C4 C 0 1 Y N N -32.883 2.082 21.745 -7.798 -0.541 -1.293 C11 Y2S 4
Y2S C7 C5 C 0 1 Y N N -31.559 3.164 23.417 -5.983 0.493 -0.122 C7 Y2S 5
Y2S C8 C6 C 0 1 Y N N -32.140 4.377 23.061 -5.195 0.390 -1.253 C8 Y2S 6
Y2S C9 C7 C 0 1 Y N N -33.088 4.439 22.058 -5.707 -0.180 -2.403 C9 Y2S 7
Y2S C10 C8 C 0 1 Y N N -33.461 3.287 21.398 -7.010 -0.643 -2.424 C10 Y2S 8
Y2S C12 C9 C 0 1 N N N -31.756 5.652 23.762 -3.777 0.901 -1.232 C12 Y2S 9
Y2S N2 N1 N 0 1 N N N -29.320 0.429 24.437 -9.716 1.764 2.085 N2 Y2S 10
Y2S C3 C10 C 0 1 N N N -29.910 0.462 23.222 -8.882 1.446 1.075 C3 Y2S 11
Y2S C1 C11 C 0 1 N N N -30.093 0.602 25.667 -10.436 3.039 2.067 C1 Y2S 12
Y2S O4 O1 O 0 1 N N N -29.252 0.302 22.220 -8.728 2.216 0.151 O4 Y2S 13
Y2S N13 N2 N 0 1 N N N -32.556 6.789 23.278 -2.877 -0.174 -0.806 N13 Y2S 14
Y2S O15 O2 O 0 1 N N N -31.165 7.043 21.585 -1.104 1.151 -0.982 O15 Y2S 15
Y2S C16 C12 C 0 1 Y N N -32.908 8.598 21.635 -0.644 -1.030 -0.276 C16 Y2S 16
Y2S N17 N3 N 0 1 Y N N -34.146 8.857 22.040 -1.144 -2.225 0.021 N17 Y2S 17
Y2S C18 C13 C 0 1 Y N N -34.822 9.895 21.589 -0.382 -3.221 0.413 C18 Y2S 18
Y2S C19 C14 C 0 1 Y N N -34.263 10.775 20.666 0.994 -3.064 0.534 C19 Y2S 19
Y2S C20 C15 C 0 1 Y N N -32.949 10.546 20.222 1.568 -1.818 0.230 C20 Y2S 20
Y2S C21 C16 C 0 1 Y N N -32.274 9.430 20.717 0.723 -0.787 -0.189 C21 Y2S 21
Y2S C22 C17 C 0 1 N N N -32.292 11.428 19.232 3.026 -1.606 0.344 C22 Y2S 22
Y2S C23 C18 C 0 1 N N N -31.033 11.175 18.917 3.548 -0.423 0.052 C23 Y2S 23
Y2S C24 C19 C 0 1 N N N -30.256 11.981 17.910 5.035 -0.206 0.169 C24 Y2S 24
Y2S C26 C20 C 0 1 N N N -30.528 11.387 16.520 5.601 0.193 -1.196 C26 Y2S 25
Y2S C27 C21 C 0 1 N N N -29.619 12.073 15.510 7.110 0.413 -1.078 C27 Y2S 26
Y2S C28 C22 C 0 1 N N N -30.078 13.525 15.449 7.386 1.526 -0.065 C28 Y2S 27
Y2S C30 C23 C 0 1 N N N -29.745 14.130 16.814 6.820 1.127 1.299 C30 Y2S 28
Y2S C31 C24 C 0 1 N N N -30.635 13.455 17.866 5.311 0.907 1.181 C31 Y2S 29
Y2S C32 C25 C 0 1 N N N -29.380 14.257 14.310 8.896 1.746 0.053 C32 Y2S 30
Y2S O36 O3 O 0 1 N N N -34.961 11.850 20.208 1.772 -4.099 0.940 O36 Y2S 31
Y2S C37 C26 C 0 1 N N N -36.169 12.220 20.887 1.111 -5.332 1.230 C37 Y2S 32
Y2S F33 F1 F 0 1 N N N -28.052 14.525 14.628 9.413 2.112 -1.194 F33 Y2S 33
Y2S F34 F2 F 0 1 N N N -30.082 15.433 14.040 9.148 2.764 0.979 F34 Y2S 34
Y2S F35 F3 F 0 1 N N N -29.384 13.477 13.156 9.507 0.563 0.483 F35 Y2S 35
Y2S H1 H1 H 0 1 N N N -31.850 0.338 24.033 -8.858 -0.688 1.111 H1 Y2S 36
Y2S H2 H2 H 0 1 N N N -31.725 -0.048 22.283 -7.511 0.085 1.981 H2 Y2S 37
Y2S H3 H3 H 0 1 N N N -33.186 1.181 21.232 -8.815 -0.904 -1.309 H3 Y2S 38
Y2S H4 H4 H 0 1 N N N -30.832 3.121 24.214 -5.583 0.938 0.777 H4 Y2S 39
Y2S H5 H5 H 0 1 N N N -33.535 5.385 21.792 -5.091 -0.259 -3.286 H5 Y2S 40
Y2S H6 H6 H 0 1 N N N -34.202 3.327 20.613 -7.411 -1.084 -3.324 H6 Y2S 41
Y2S H7 H7 H 0 1 N N N -31.922 5.531 24.843 -3.497 1.235 -2.230 H7 Y2S 42
Y2S H8 H8 H 0 1 N N N -30.692 5.857 23.575 -3.702 1.735 -0.535 H8 Y2S 43
Y2S H9 H9 H 0 1 N N N -28.333 0.283 24.497 -9.839 1.147 2.824 H9 Y2S 44
Y2S H10 H10 H 0 1 N N N -29.420 0.541 26.535 -9.719 3.861 2.049 H10 Y2S 45
Y2S H11 H11 H 0 1 N N N -30.587 1.585 25.655 -11.066 3.088 1.179 H11 Y2S 46
Y2S H12 H12 H 0 1 N N N -30.854 -0.189 25.736 -11.057 3.119 2.959 H12 Y2S 47
Y2S H13 H13 H 0 1 N N N -33.377 7.080 23.770 -3.235 -1.050 -0.591 H13 Y2S 48
Y2S H14 H14 H 0 1 N N N -35.828 10.066 21.942 -0.831 -4.175 0.645 H14 Y2S 49
Y2S H15 H15 H 0 1 N N N -31.268 9.213 20.390 1.124 0.186 -0.433 H15 Y2S 50
Y2S H16 H16 H 0 1 N N N -32.824 12.252 18.781 3.666 -2.415 0.665 H16 Y2S 51
Y2S H17 H17 H 0 1 N N N -30.537 10.349 19.406 2.908 0.386 -0.269 H17 Y2S 52
Y2S H18 H18 H 0 1 N N N -29.181 11.894 18.129 5.511 -1.128 0.503 H18 Y2S 53
Y2S H19 H19 H 0 1 N N N -31.580 11.555 16.245 5.404 -0.600 -1.917 H19 Y2S 54
Y2S H20 H20 H 0 1 N N N -30.320 10.307 16.532 5.124 1.115 -1.530 H20 Y2S 55
Y2S H21 H21 H 0 1 N N N -29.719 11.599 14.522 7.587 -0.508 -0.743 H21 Y2S 56
Y2S H22 H22 H 0 1 N N N -28.571 12.017 15.839 7.513 0.698 -2.049 H22 Y2S 57
Y2S H23 H23 H 0 1 N N N -31.166 13.558 15.292 6.910 2.448 -0.400 H23 Y2S 58
Y2S H24 H24 H 0 1 N N N -28.686 13.952 17.052 7.297 0.205 1.634 H24 Y2S 59
Y2S H25 H25 H 0 1 N N N -29.941 15.212 16.800 7.017 1.920 2.020 H25 Y2S 60
Y2S H26 H26 H 0 1 N N N -30.467 13.915 18.851 4.835 1.829 0.846 H26 Y2S 61
Y2S H27 H27 H 0 1 N N N -31.694 13.562 17.587 4.908 0.622 2.153 H27 Y2S 62
Y2S H28 H28 H 0 1 N N N -36.610 13.101 20.398 0.388 -5.177 2.031 H28 Y2S 63
Y2S H29 H29 H 0 1 N N N -36.882 11.384 20.848 0.594 -5.686 0.338 H29 Y2S 64
Y2S H30 H30 H 0 1 N N N -35.941 12.459 21.936 1.846 -6.074 1.543 H30 Y2S 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y2S F35 C32 SING N N 1
Y2S F34 C32 SING N N 2
Y2S C32 F33 SING N N 3
Y2S C32 C28 SING N N 4
Y2S C28 C27 SING N N 5
Y2S C28 C30 SING N N 6
Y2S C27 C26 SING N N 7
Y2S C26 C24 SING N N 8
Y2S C30 C31 SING N N 9
Y2S C31 C24 SING N N 10
Y2S C24 C23 SING N N 11
Y2S C23 C22 DOUB N E 12
Y2S C22 C20 SING N N 13
Y2S O36 C19 SING N N 14
Y2S O36 C37 SING N N 15
Y2S C20 C19 DOUB Y N 16
Y2S C20 C21 SING Y N 17
Y2S C19 C18 SING Y N 18
Y2S C21 C16 DOUB Y N 19
Y2S C10 C11 DOUB Y N 20
Y2S C10 C9 SING Y N 21
Y2S O15 C14 DOUB N N 22
Y2S C18 N17 DOUB Y N 23
Y2S C16 N17 SING Y N 24
Y2S C16 C14 SING N N 25
Y2S C11 C6 SING Y N 26
Y2S C9 C8 DOUB Y N 27
Y2S C14 N13 SING N N 28
Y2S O4 C3 DOUB N N 29
Y2S C6 C5 SING N N 30
Y2S C6 C7 DOUB Y N 31
Y2S C8 C7 SING Y N 32
Y2S C8 C12 SING N N 33
Y2S C5 C3 SING N N 34
Y2S C3 N2 SING N N 35
Y2S N13 C12 SING N N 36
Y2S N2 C1 SING N N 37
Y2S C5 H1 SING N N 38
Y2S C5 H2 SING N N 39
Y2S C11 H3 SING N N 40
Y2S C7 H4 SING N N 41
Y2S C9 H5 SING N N 42
Y2S C10 H6 SING N N 43
Y2S C12 H7 SING N N 44
Y2S C12 H8 SING N N 45
Y2S N2 H9 SING N N 46
Y2S C1 H10 SING N N 47
Y2S C1 H11 SING N N 48
Y2S C1 H12 SING N N 49
Y2S N13 H13 SING N N 50
Y2S C18 H14 SING N N 51
Y2S C21 H15 SING N N 52
Y2S C22 H16 SING N N 53
Y2S C23 H17 SING N N 54
Y2S C24 H18 SING N N 55
Y2S C26 H19 SING N N 56
Y2S C26 H20 SING N N 57
Y2S C27 H21 SING N N 58
Y2S C27 H22 SING N N 59
Y2S C28 H23 SING N N 60
Y2S C30 H24 SING N N 61
Y2S C30 H25 SING N N 62
Y2S C31 H26 SING N N 63
Y2S C31 H27 SING N N 64
Y2S C37 H28 SING N N 65
Y2S C37 H29 SING N N 66
Y2S C37 H30 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y2S SMILES ACDLabs 12.01 "C(NCc1cc(CC(NC)=O)ccc1)(=O)c2ncc(c(c2)[C@H]=[C@H]C3CCC(CC3)C(F)(F)F)OC"
Y2S InChI InChI 1.03 "InChI=1S/C26H30F3N3O3/c1-30-24(33)13-18-4-3-5-19(12-18)15-32-25(34)22-14-20(23(35-2)16-31-22)9-6-17-7-10-21(11-8-17)26(27,28)29/h3-6,9,12,14,16-17,21H,7-8,10-11,13,15H2,1-2H3,(H,30,33)(H,32,34)/b9-6+/t17-,21-"
Y2S InChIKey InChI 1.03 YBEYBRFOUHYJAL-ZDXIVYMOSA-N
Y2S SMILES_CANONICAL CACTVS 3.385 "CNC(=O)Cc1cccc(CNC(=O)c2cc(/C=C/[C@H]3CC[C@@H](CC3)C(F)(F)F)c(OC)cn2)c1"
Y2S SMILES CACTVS 3.385 "CNC(=O)Cc1cccc(CNC(=O)c2cc(C=C[CH]3CC[CH](CC3)C(F)(F)F)c(OC)cn2)c1"
Y2S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)Cc1cccc(c1)CNC(=O)c2cc(c(cn2)OC)/C=C/C3CCC(CC3)C(F)(F)F"
Y2S SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)Cc1cccc(c1)CNC(=O)c2cc(c(cn2)OC)C=CC3CCC(CC3)C(F)(F)F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y2S "SYSTEMATIC NAME" ACDLabs 12.01 "5-methoxy-N-({3-[2-(methylamino)-2-oxoethyl]phenyl}methyl)-4-{(E)-2-[trans-4-(trifluoromethyl)cyclohexyl]ethenyl}pyridine-2-carboxamide"
Y2S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-methoxy-~{N}-[[3-[2-(methylamino)-2-oxidanylidene-ethyl]phenyl]methyl]-4-[(~{E})-2-[4-(trifluoromethyl)cyclohexyl]ethenyl]pyridine-2-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y2S "Create component" 2021-02-01 RCSB
Y2S "Initial release" 2023-08-16 RCSB
#