data_Y2U # _chem_comp.id Y2U _chem_comp.name "2-{[(2S)-5-chloro-2,3-dihydro-1H-inden-2-yl]amino}-6-(oxetan-3-yl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-5-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H17 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-09 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.806 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y2U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G3S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y2U C11 C1 C 0 1 Y N N N N N -14.297 7.632 47.148 0.495 -0.610 0.066 C11 Y2U 1 Y2U C13 C2 C 0 1 N N R N N N -13.176 5.882 45.841 -1.932 -0.356 -0.267 C13 Y2U 2 Y2U C15 C3 C 0 1 Y N N N N N -12.412 4.159 44.411 -4.355 -0.495 -0.175 C15 Y2U 3 Y2U C16 C4 C 0 1 Y N N N N N -12.020 5.362 43.847 -3.993 0.588 0.604 C16 Y2U 4 Y2U C17 C5 C 0 1 N N N N N N -12.718 6.508 44.524 -2.494 0.586 0.818 C17 Y2U 5 Y2U C18 C6 C 0 1 Y N N N N N -11.087 5.369 42.818 -4.963 1.468 1.055 C18 Y2U 6 Y2U C19 C7 C 0 1 Y N N N N N -10.548 4.183 42.353 -6.289 1.268 0.729 C19 Y2U 7 Y2U C20 C8 C 0 1 Y N N N N N -10.944 2.998 42.932 -6.652 0.184 -0.051 C20 Y2U 8 Y2U C21 C9 C 0 1 Y N N N N N -11.858 2.970 43.968 -5.685 -0.695 -0.502 C21 Y2U 9 Y2U C24 C10 C 0 1 Y N N N N N -15.397 9.209 48.333 1.860 1.058 -0.752 C24 Y2U 10 Y2U C25 C11 C 0 1 Y N N N N N -14.202 9.844 48.666 2.972 0.356 -0.274 C25 Y2U 11 Y2U O1 O1 O 0 1 N N N N N N -14.558 11.810 50.044 4.940 1.588 -0.814 O1 Y2U 12 Y2U C2 C12 C 0 1 N N N N N N -13.833 11.033 49.463 4.419 0.613 -0.308 C2 Y2U 13 Y2U N3 N1 N 0 1 N N N N N N -12.493 11.136 49.396 5.084 -0.385 0.301 N3 Y2U 14 Y2U C4 C13 C 0 1 N N N N N N -11.749 12.218 50.069 6.538 -0.469 0.459 C4 Y2U 15 Y2U C5 C14 C 0 1 N N N N N N -10.950 11.733 51.289 7.309 -0.485 -0.874 C5 Y2U 16 Y2U O6 O2 O 0 1 N N N N N N -9.690 12.015 50.630 8.212 0.438 -0.233 O6 Y2U 17 Y2U C7 C15 C 0 1 N N N N N N -10.384 12.690 49.547 7.216 0.892 0.705 C7 Y2U 18 Y2U C8 C16 C 0 1 N N N N N N -11.874 10.068 48.604 4.113 -1.376 0.781 C8 Y2U 19 Y2U C9 C17 C 0 1 Y N N N N N -13.044 9.262 48.146 2.754 -0.859 0.389 C9 Y2U 20 Y2U N10 N2 N 0 1 Y N N N N N -13.074 8.147 47.398 1.527 -1.304 0.538 N10 Y2U 21 Y2U N12 N3 N 0 1 N N N N N N -14.353 6.517 46.393 -0.780 -1.106 0.240 N12 Y2U 22 Y2U C14 C18 C 0 1 N N N N N N -13.408 4.403 45.508 -3.124 -1.298 -0.537 C14 Y2U 23 Y2U CL22 CL1 CL 0 0 N N N N N N -10.265 1.500 42.362 -8.319 -0.072 -0.463 CL22 Y2U 24 Y2U N23 N4 N 0 1 Y N N N N N -15.474 8.111 47.580 0.657 0.546 -0.563 N23 Y2U 25 Y2U H34 H1 H 0 1 N N N N N N -12.349 5.949 46.564 -1.668 0.202 -1.165 H34 Y2U 26 Y2U H38 H2 H 0 1 N N N N N N -13.575 6.858 43.931 -2.255 0.205 1.811 H38 Y2U 27 Y2U H37 H3 H 0 1 N N N N N N -12.028 7.346 44.701 -2.093 1.592 0.692 H37 Y2U 28 Y2U H39 H4 H 0 1 N N N N N N -10.780 6.307 42.378 -4.680 2.315 1.663 H39 Y2U 29 Y2U H40 H5 H 0 1 N N N N N N -9.828 4.186 41.548 -7.043 1.956 1.082 H40 Y2U 30 Y2U H41 H6 H 0 1 N N N N N N -12.137 2.033 44.426 -5.969 -1.541 -1.110 H41 Y2U 31 Y2U H42 H7 H 0 1 N N N N N N -16.317 9.632 48.708 1.984 1.999 -1.268 H42 Y2U 32 Y2U H26 H8 H 0 1 N N N N N N -12.395 13.070 50.327 6.846 -1.249 1.156 H26 Y2U 33 Y2U H27 H9 H 0 1 N N N N N N -11.119 12.333 52.195 7.759 -1.449 -1.112 H27 Y2U 34 Y2U H28 H10 H 0 1 N N N N N N -11.099 10.668 51.521 6.756 -0.053 -1.709 H28 Y2U 35 Y2U H30 H11 H 0 1 N N N N N N -10.133 12.300 48.549 6.635 1.744 0.353 H30 Y2U 36 Y2U H29 H12 H 0 1 N N N N N N -10.261 13.783 49.556 7.593 1.020 1.720 H29 Y2U 37 Y2U H32 H13 H 0 1 N N N N N N -11.321 10.482 47.748 4.298 -2.341 0.309 H32 Y2U 38 Y2U H31 H14 H 0 1 N N N N N N -11.195 9.462 49.222 4.180 -1.470 1.865 H31 Y2U 39 Y2U H33 H15 H 0 1 N N N N N N -14.802 5.824 46.957 -0.914 -1.950 0.698 H33 Y2U 40 Y2U H35 H16 H 0 1 N N N N N N -13.205 3.763 46.379 -3.153 -1.580 -1.590 H35 Y2U 41 Y2U H36 H17 H 0 1 N N N N N N -14.436 4.231 45.157 -3.054 -2.187 0.091 H36 Y2U 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y2U O1 C2 DOUB N N 1 Y2U C2 N3 SING N N 2 Y2U C2 C25 SING N N 3 Y2U N3 C4 SING N N 4 Y2U N3 C8 SING N N 5 Y2U C4 C5 SING N N 6 Y2U C4 C7 SING N N 7 Y2U C5 O6 SING N N 8 Y2U O6 C7 SING N N 9 Y2U C8 C9 SING N N 10 Y2U C9 N10 DOUB Y N 11 Y2U C9 C25 SING Y N 12 Y2U N10 C11 SING Y N 13 Y2U C11 N12 SING N N 14 Y2U C11 N23 DOUB Y N 15 Y2U N12 C13 SING N N 16 Y2U C13 C14 SING N N 17 Y2U C13 C17 SING N N 18 Y2U C14 C15 SING N N 19 Y2U C15 C16 DOUB Y N 20 Y2U C15 C21 SING Y N 21 Y2U C16 C17 SING N N 22 Y2U C16 C18 SING Y N 23 Y2U C18 C19 DOUB Y N 24 Y2U C19 C20 SING Y N 25 Y2U C20 C21 DOUB Y N 26 Y2U C20 CL22 SING N N 27 Y2U N23 C24 SING Y N 28 Y2U C24 C25 DOUB Y N 29 Y2U C13 H34 SING N N 30 Y2U C17 H38 SING N N 31 Y2U C17 H37 SING N N 32 Y2U C18 H39 SING N N 33 Y2U C19 H40 SING N N 34 Y2U C21 H41 SING N N 35 Y2U C24 H42 SING N N 36 Y2U C4 H26 SING N N 37 Y2U C5 H27 SING N N 38 Y2U C5 H28 SING N N 39 Y2U C7 H30 SING N N 40 Y2U C7 H29 SING N N 41 Y2U C8 H32 SING N N 42 Y2U C8 H31 SING N N 43 Y2U N12 H33 SING N N 44 Y2U C14 H35 SING N N 45 Y2U C14 H36 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y2U SMILES ACDLabs 12.01 "Clc1ccc2CC(Cc2c1)Nc1nc2CN(C3COC3)C(=O)c2cn1" Y2U InChI InChI 1.06 "InChI=1S/C18H17ClN4O2/c19-12-2-1-10-4-13(5-11(10)3-12)21-18-20-6-15-16(22-18)7-23(17(15)24)14-8-25-9-14/h1-3,6,13-14H,4-5,7-9H2,(H,20,21,22)/t13-/m0/s1" Y2U InChIKey InChI 1.06 IRYDHCPYJSJTMH-ZDUSSCGKSA-N Y2U SMILES_CANONICAL CACTVS 3.385 "Clc1ccc2C[C@H](Cc2c1)Nc3ncc4C(=O)N(Cc4n3)C5COC5" Y2U SMILES CACTVS 3.385 "Clc1ccc2C[CH](Cc2c1)Nc3ncc4C(=O)N(Cc4n3)C5COC5" Y2U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)C[C@@H](C2)Nc3ncc4c(n3)CN(C4=O)C5COC5" Y2U SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)CC(C2)Nc3ncc4c(n3)CN(C4=O)C5COC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y2U "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(2S)-5-chloro-2,3-dihydro-1H-inden-2-yl]amino}-6-(oxetan-3-yl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-5-one" Y2U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(2~{R})-5-chloranyl-2,3-dihydro-1~{H}-inden-2-yl]amino]-6-(oxetan-3-yl)-7~{H}-pyrrolo[3,4-d]pyrimidin-5-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y2U "Create component" 2023-06-09 RCSB Y2U "Initial release" 2024-12-18 RCSB #