data_Y2Y # _chem_comp.id Y2Y _chem_comp.name "(3S,4R)-3-amino-4-hydroxyheptanedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H13 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-02 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 191.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y2Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X8K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y2Y N N N 0 1 N N N Y Y N 40.368 17.631 11.561 -1.133 1.393 -0.758 N Y2Y 1 Y2Y C2 CA C 0 1 N N N N N N 39.458 15.833 15.481 2.607 -0.602 -0.322 CA Y2Y 2 Y2Y C3 C C 0 1 N N N N N N 39.625 16.364 16.674 3.828 0.208 0.030 C Y2Y 3 Y2Y O2 O O 0 1 N N N N N N 39.338 17.544 16.882 3.705 1.286 0.560 O Y2Y 4 Y2Y CB1 CB1 C 0 1 N N N N N N 38.342 17.033 10.720 -2.388 -0.664 -0.320 CB1 Y2Y 5 Y2Y CG1 CG1 C 0 1 N N N N N N 37.905 18.352 10.017 -3.627 0.090 0.091 CG1 Y2Y 6 Y2Y OD1 OD1 O 0 1 N N N N N N 38.228 19.446 10.516 -4.839 -0.442 -0.127 OD1 Y2Y 7 Y2Y OD2 OD2 O 0 1 N N N N N N 37.249 18.321 9.008 -3.528 1.174 0.615 OD2 Y2Y 8 Y2Y C1 C01 C 0 1 N N N N N N 39.660 16.821 14.381 1.349 0.163 0.094 C01 Y2Y 9 Y2Y C C2 C 0 1 N N R Y N Y 39.054 16.369 12.953 0.110 -0.659 -0.264 C2 Y2Y 10 Y2Y CA CA1 C 0 1 N N S Y N N 39.213 17.387 11.897 -1.148 0.158 0.038 CA1 Y2Y 11 Y2Y O O1 O 0 1 N N N Y N Y 37.999 16.133 13.094 0.095 -1.860 0.511 O1 Y2Y 12 Y2Y H H1 H 0 1 N N N Y Y N 40.910 17.860 12.370 -1.111 1.186 -1.745 H1 Y2Y 13 Y2Y H2 H2 H 0 1 N Y N Y Y N 40.761 16.828 11.113 -1.921 1.980 -0.529 H2 Y2Y 14 Y2Y H4 H4 H 0 1 N N N N N N 38.435 15.434 15.413 2.586 -0.778 -1.398 H4 Y2Y 15 Y2Y H5 H5 H 0 1 N N N N N N 40.181 15.013 15.356 2.641 -1.558 0.201 H5 Y2Y 16 Y2Y H7 H7 H 0 1 N N N N N N 37.454 16.485 11.067 -2.354 -1.620 0.204 H7 Y2Y 17 Y2Y H8 H8 H 0 1 N N N N N N 38.907 16.406 10.015 -2.409 -0.840 -1.395 H8 Y2Y 18 Y2Y H9 H9 H 0 1 N N N N N N 37.881 20.152 9.984 -5.604 0.079 0.154 H9 Y2Y 19 Y2Y H10 H10 H 0 1 N N N N N N 40.741 16.983 14.259 1.371 0.339 1.169 H10 Y2Y 20 Y2Y H11 H11 H 0 1 N N N N N N 39.178 17.765 14.675 1.315 1.119 -0.430 H11 Y2Y 21 Y2Y H12 H12 H 0 1 N Y N Y N Y 39.652 15.498 12.647 0.134 -0.910 -1.324 H12 Y2Y 22 Y2Y HA H13 H 0 1 N N N Y N N 38.770 18.305 12.311 -1.173 0.410 1.098 H13 Y2Y 23 Y2Y H14 H14 H 0 1 N N N Y N Y 37.909 15.477 13.775 0.073 -1.712 1.466 H14 Y2Y 24 Y2Y O1 OXT O 0 1 N N N N N N 39.477 15.503 17.691 5.052 -0.269 -0.245 OXT Y2Y 25 Y2Y H3 H3 H 0 1 N N N N N N 39.155 15.967 18.455 5.805 0.286 -0.001 H3 Y2Y 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y2Y OD2 CG1 DOUB N N 1 Y2Y CG1 OD1 SING N N 2 Y2Y CG1 CB1 SING N N 3 Y2Y CB1 CA SING N N 4 Y2Y N CA SING N N 5 Y2Y CA C SING N N 6 Y2Y C O SING N N 7 Y2Y C C1 SING N N 8 Y2Y C1 C2 SING N N 9 Y2Y C2 C3 SING N N 10 Y2Y C3 O2 DOUB N N 11 Y2Y N H SING N N 12 Y2Y N H2 SING N N 13 Y2Y C2 H4 SING N N 14 Y2Y C2 H5 SING N N 15 Y2Y CB1 H7 SING N N 16 Y2Y CB1 H8 SING N N 17 Y2Y OD1 H9 SING N N 18 Y2Y C1 H10 SING N N 19 Y2Y C1 H11 SING N N 20 Y2Y C H12 SING N N 21 Y2Y CA HA SING N N 22 Y2Y O H14 SING N N 23 Y2Y C3 O1 SING N N 24 Y2Y O1 H3 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y2Y SMILES ACDLabs 12.01 "NC(CC(O)=O)C(CCC(=O)O)O" Y2Y InChI InChI 1.03 "InChI=1S/C7H13NO5/c8-4(3-7(12)13)5(9)1-2-6(10)11/h4-5,9H,1-3,8H2,(H,10,11)(H,12,13)/t4-,5+/m0/s1" Y2Y InChIKey InChI 1.03 XBEFTDYWKMUVOR-CRCLSJGQSA-N Y2Y SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CC(O)=O)[C@H](O)CCC(O)=O" Y2Y SMILES CACTVS 3.385 "N[CH](CC(O)=O)[CH](O)CCC(O)=O" Y2Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)[C@H]([C@H](CC(=O)O)N)O" Y2Y SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)C(C(CC(=O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y2Y "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,4R)-3-amino-4-hydroxyheptanedioic acid" Y2Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},4~{R})-3-azanyl-4-oxidanyl-heptanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y2Y "Create component" 2020-06-02 RCSB Y2Y "Initial release" 2021-06-02 RCSB Y2Y "Modify backbone" 2023-11-03 PDBE #