data_Y32 # _chem_comp.id Y32 _chem_comp.name "(2~{S})-5-azanyl-5-oxidanylidene-2-[(3-phenoxyphenyl)carbonylamino]pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-16 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.346 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y32 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R5B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y32 N1 N1 N 0 1 N N N N N N 5.590 50.450 15.243 1.706 -0.130 0.467 N1 Y32 1 Y32 C4 C1 C 0 1 N N N N N N 7.259 51.020 16.891 4.062 -0.505 -0.074 C4 Y32 2 Y32 C5 C2 C 0 1 N N N N N N 7.346 51.995 14.500 2.688 -2.295 0.955 C5 Y32 3 Y32 C6 C3 C 0 1 N N N N N N 7.836 52.196 17.654 4.073 0.596 -1.137 C6 Y32 4 Y32 C7 C4 C 0 1 N N N N N N 6.949 52.607 18.795 5.446 1.213 -1.207 C7 Y32 5 Y32 C8 C5 C 0 1 Y N N N N N 2.619 49.839 13.363 -1.917 0.649 0.285 C8 Y32 6 Y32 C10 C6 C 0 1 Y N N N N N 2.135 47.504 13.035 -2.380 2.670 1.498 C10 Y32 7 Y32 C13 C7 C 0 1 Y N N N N N -0.194 50.270 12.984 -4.543 0.370 -0.241 C13 Y32 8 Y32 C15 C8 C 0 1 Y N N N N N -1.449 52.250 12.629 -4.942 -1.994 -0.246 C15 Y32 9 Y32 C17 C9 C 0 1 Y N N N N N -1.210 51.364 14.821 -5.399 -0.698 -2.209 C17 Y32 10 Y32 C1 C10 C 0 1 Y N N N N N 3.866 49.500 13.869 -0.567 0.765 0.618 C1 Y32 11 Y32 C2 C11 C 0 1 N N N N N N 4.759 50.639 14.242 0.403 -0.245 0.144 C2 Y32 12 Y32 O1 O1 O 0 1 N N N N N N 4.729 51.703 13.637 0.025 -1.179 -0.536 O1 Y32 13 Y32 C3 C12 C 0 1 N N S N N N 6.464 51.518 15.683 2.668 -1.131 -0.002 C3 Y32 14 Y32 O2 O2 O 0 1 N N N N N N 7.474 53.246 14.336 3.501 -3.338 0.725 O2 Y32 15 Y32 O3 O3 O 0 1 N N N N N N 7.902 51.081 13.789 1.973 -2.289 1.928 O3 Y32 16 Y32 N2 N2 N 0 1 N N N N N N 6.191 53.693 18.639 5.693 2.210 -2.079 N2 Y32 17 Y32 O4 O4 O 0 1 N N N N N N 7.055 51.995 19.853 6.329 0.811 -0.479 O4 Y32 18 Y32 C9 C13 C 0 1 Y N N N N N 1.752 48.834 12.994 -2.819 1.603 0.727 C9 Y32 19 Y32 C11 C14 C 0 1 Y N N N N N 3.397 47.183 13.479 -1.044 2.780 1.838 C11 Y32 20 Y32 C12 C15 C 0 1 Y N N N N N 4.258 48.172 13.916 -0.136 1.839 1.398 C12 Y32 21 Y32 O5 O5 O 0 1 N N N N N N 0.503 49.175 12.491 -4.135 1.493 0.405 O5 Y32 22 Y32 C14 C16 C 0 1 Y N N N N N -0.692 51.205 12.117 -4.522 -0.854 0.412 C14 Y32 23 Y32 C16 C17 C 0 1 Y N N N N N -1.742 52.312 13.976 -5.383 -1.915 -1.555 C16 Y32 24 Y32 C18 C18 C 0 1 Y N N N N N -0.469 50.313 14.328 -4.986 0.446 -1.554 C18 Y32 25 Y32 H1 H1 H 0 1 N N N N N N 5.619 49.563 15.704 2.009 0.617 1.006 H1 Y32 26 Y32 H2 H2 H 0 1 N N N N N N 6.594 50.447 17.554 4.791 -1.271 -0.337 H2 Y32 27 Y32 H3 H3 H 0 1 N N N N N N 8.079 50.373 16.546 4.318 -0.077 0.895 H3 Y32 28 Y32 H4 H4 H 0 1 N N N N N N 8.822 51.913 18.052 3.817 0.168 -2.106 H4 Y32 29 Y32 H5 H5 H 0 1 N N N N N N 7.949 53.047 16.966 3.343 1.362 -0.873 H5 Y32 30 Y32 H6 H6 H 0 1 N N N N N N 2.333 50.875 13.260 -2.257 -0.179 -0.319 H6 Y32 31 Y32 H7 H7 H 0 1 N N N N N N 1.452 46.728 12.722 -3.086 3.411 1.845 H7 Y32 32 Y32 H8 H8 H 0 1 N N N N N N -1.812 53.022 11.967 -4.930 -2.946 0.263 H8 Y32 33 Y32 H9 H9 H 0 1 N N N N N N -1.376 51.446 15.885 -5.744 -0.639 -3.231 H9 Y32 34 Y32 H10 H10 H 0 1 N N N N N N 5.851 52.371 16.009 2.375 -1.480 -0.993 H10 Y32 35 Y32 H11 H11 H 0 1 N N N N N N 8.050 53.412 13.599 3.479 -4.061 1.367 H11 Y32 36 Y32 H12 H12 H 0 1 N N N N N N 5.667 54.052 19.411 4.986 2.531 -2.661 H12 Y32 37 Y32 H13 H13 H 0 1 N N N N N N 6.146 54.148 17.750 6.577 2.607 -2.124 H13 Y32 38 Y32 H14 H14 H 0 1 N N N N N N 3.717 46.152 13.486 -0.710 3.606 2.449 H14 Y32 39 Y32 H15 H15 H 0 1 N N N N N N 5.235 47.910 14.294 0.908 1.933 1.658 H15 Y32 40 Y32 H16 H16 H 0 1 N N N N N N -0.500 51.131 11.057 -4.177 -0.916 1.433 H16 Y32 41 Y32 H17 H17 H 0 1 N N N N N N -2.380 53.093 14.362 -5.715 -2.807 -2.066 H17 Y32 42 Y32 H18 H18 H 0 1 N N N N N N -0.111 49.536 14.987 -5.007 1.398 -2.063 H18 Y32 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y32 C14 C15 DOUB Y N 1 Y32 C14 C13 SING Y N 2 Y32 O5 C13 SING N N 3 Y32 O5 C9 SING N N 4 Y32 C15 C16 SING Y N 5 Y32 C13 C18 DOUB Y N 6 Y32 C9 C10 DOUB Y N 7 Y32 C9 C8 SING Y N 8 Y32 C10 C11 SING Y N 9 Y32 C8 C1 DOUB Y N 10 Y32 C11 C12 DOUB Y N 11 Y32 O1 C2 DOUB N N 12 Y32 O3 C5 DOUB N N 13 Y32 C1 C12 SING Y N 14 Y32 C1 C2 SING N N 15 Y32 C16 C17 DOUB Y N 16 Y32 C2 N1 SING N N 17 Y32 C18 C17 SING Y N 18 Y32 O2 C5 SING N N 19 Y32 C5 C3 SING N N 20 Y32 N1 C3 SING N N 21 Y32 C3 C4 SING N N 22 Y32 C4 C6 SING N N 23 Y32 C6 C7 SING N N 24 Y32 N2 C7 SING N N 25 Y32 C7 O4 DOUB N N 26 Y32 N1 H1 SING N N 27 Y32 C4 H2 SING N N 28 Y32 C4 H3 SING N N 29 Y32 C6 H4 SING N N 30 Y32 C6 H5 SING N N 31 Y32 C8 H6 SING N N 32 Y32 C10 H7 SING N N 33 Y32 C15 H8 SING N N 34 Y32 C17 H9 SING N N 35 Y32 C3 H10 SING N N 36 Y32 O2 H11 SING N N 37 Y32 N2 H12 SING N N 38 Y32 N2 H13 SING N N 39 Y32 C11 H14 SING N N 40 Y32 C12 H15 SING N N 41 Y32 C14 H16 SING N N 42 Y32 C16 H17 SING N N 43 Y32 C18 H18 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y32 InChI InChI 1.06 "InChI=1S/C18H18N2O5/c19-16(21)10-9-15(18(23)24)20-17(22)12-5-4-8-14(11-12)25-13-6-2-1-3-7-13/h1-8,11,15H,9-10H2,(H2,19,21)(H,20,22)(H,23,24)/t15-/m0/s1" Y32 InChIKey InChI 1.06 MLMXIRRYCOORCS-HNNXBMFYSA-N Y32 SMILES_CANONICAL CACTVS 3.385 "NC(=O)CC[C@H](NC(=O)c1cccc(Oc2ccccc2)c1)C(O)=O" Y32 SMILES CACTVS 3.385 "NC(=O)CC[CH](NC(=O)c1cccc(Oc2ccccc2)c1)C(O)=O" Y32 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2cccc(c2)C(=O)N[C@@H](CCC(=O)N)C(=O)O" Y32 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2cccc(c2)C(=O)NC(CCC(=O)N)C(=O)O" # _pdbx_chem_comp_identifier.comp_id Y32 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-5-azanyl-5-oxidanylidene-2-[(3-phenoxyphenyl)carbonylamino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y32 "Create component" 2023-11-16 PDBE Y32 "Initial release" 2024-01-17 RCSB #