data_Y33 # _chem_comp.id Y33 _chem_comp.name "(5R)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H27 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-03 _chem_comp.pdbx_modified_date 2023-10-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.478 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y33 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FAJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y33 C1 C1 C 0 1 N N N 3.265 -15.980 3.654 -1.651 0.763 -0.142 C1 Y33 1 Y33 C2 C2 C 0 1 N N N 4.671 -15.995 3.044 -0.849 -0.462 0.234 C2 Y33 2 Y33 C3 C3 C 0 1 N N N 4.500 -16.818 1.797 -1.475 -1.555 -0.240 C3 Y33 3 Y33 N4 N1 N 0 1 N N N 3.283 -16.855 1.449 -2.661 -1.246 -0.927 N4 Y33 4 Y33 C5 C4 C 0 1 N N R 2.422 -16.133 2.382 -2.859 0.212 -0.920 C5 Y33 5 Y33 C6 C5 C 0 1 N N S 1.177 -16.980 2.612 -4.163 0.570 -0.204 C6 Y33 6 Y33 C7 C6 C 0 1 N N N 0.944 -17.850 1.394 -4.416 2.050 -0.329 C7 Y33 7 Y33 C26 C7 C 0 1 N N N 2.085 -14.742 1.849 -2.872 0.756 -2.351 C26 Y33 8 Y33 C31 C8 C 0 1 N N N 5.522 -17.375 0.918 -0.992 -2.873 -0.065 C31 Y33 9 Y33 C61 C9 C 0 1 N N R -0.061 -16.150 2.908 -4.051 0.195 1.276 C61 Y33 10 Y33 C62 C10 C 0 1 N N N -1.285 -17.060 2.906 -5.283 0.705 2.026 C62 Y33 11 Y33 O31 O1 O 0 1 N N N 5.302 -17.322 -0.324 -0.010 -3.074 0.625 O31 Y33 12 Y33 O32 O2 O 0 1 N N N 6.561 -17.845 1.406 -1.619 -3.907 -0.665 O32 Y33 13 Y33 O62 O3 O 0 1 N N N 0.126 -15.525 4.182 -3.971 -1.226 1.402 O62 Y33 14 Y33 O7 O4 O 0 1 N N N 1.186 -19.055 1.442 -3.487 2.823 -0.337 O7 Y33 15 Y33 C1A C11 C 0 1 N N S 6.358 -14.855 4.781 1.720 0.449 -0.009 C1A Y33 16 Y33 C2A C12 C 0 1 N N N 6.613 -13.963 3.582 2.134 -0.444 -1.205 C2A Y33 17 Y33 C4A C13 C 0 1 N N N 7.685 -14.860 5.504 3.095 0.768 0.634 C4A Y33 18 Y33 C5A C14 C 0 1 N N S 8.724 -14.461 4.453 4.032 0.884 -0.587 C5A Y33 19 Y33 C6A C15 C 0 1 N N N 9.790 -15.498 4.258 5.375 0.282 -0.262 C6A Y33 20 Y33 C8A C16 C 0 1 N N N 11.631 -16.811 5.104 7.582 0.404 0.764 C8A Y33 21 Y33 C9A C17 C 0 1 N N N 10.852 -14.939 6.439 5.951 2.343 0.903 C9A Y33 22 Y33 N3A N2 N 0 1 N N N 7.988 -14.302 3.176 3.401 0.141 -1.693 N3A Y33 23 Y33 N7A N3 N 0 1 N N N 10.690 -15.718 5.222 6.276 0.989 0.448 N7A Y33 24 Y33 O6A O5 O 0 1 N N N 9.834 -16.130 3.209 5.644 -0.839 -0.638 O6A Y33 25 Y33 S21 S1 S 0 1 N N N 5.991 -16.448 4.136 0.660 -0.459 1.143 S21 Y33 26 Y33 H1 H1 H 0 1 N N N 3.055 -15.033 4.172 -1.983 1.289 0.753 H1 Y33 27 Y33 H2 H2 H 0 1 N N N 3.112 -16.819 4.349 -1.060 1.425 -0.775 H2 Y33 28 Y33 H5 H5 H 0 1 N N N 3.194 -16.442 0.543 -3.254 -1.891 -1.342 H5 Y33 29 Y33 H7 H7 H 0 1 N N N 1.364 -17.637 3.474 -4.989 0.020 -0.656 H7 Y33 30 Y33 H8 H8 H 0 1 N Y N 0.628 -17.843 -0.538 -5.785 3.467 -0.510 H8 Y33 31 Y33 H9 H9 H 0 1 N N N 1.437 -14.220 2.569 -3.684 0.289 -2.909 H9 Y33 32 Y33 H10 H10 H 0 1 N N N 3.013 -14.169 1.709 -3.021 1.835 -2.328 H10 Y33 33 Y33 H11 H11 H 0 1 N N N 1.562 -14.835 0.886 -1.922 0.530 -2.834 H11 Y33 34 Y33 H12 H12 H 0 1 N N N -0.179 -15.389 2.123 -3.155 0.648 1.698 H12 Y33 35 Y33 H13 H13 H 0 1 N N N -2.185 -16.465 3.120 -6.179 0.251 1.603 H13 Y33 36 Y33 H14 H14 H 0 1 N N N -1.386 -17.536 1.920 -5.203 0.438 3.079 H14 Y33 37 Y33 H15 H15 H 0 1 N N N -1.166 -17.835 3.677 -5.344 1.789 1.929 H15 Y33 38 Y33 H16 H16 H 0 1 N N N 7.133 -18.143 0.708 -1.216 -4.768 -0.487 H16 Y33 39 Y33 H17 H17 H 0 1 N N N -0.636 -14.998 4.392 -3.144 -1.605 1.073 H17 Y33 40 Y33 H18 H18 H 0 1 N N N 5.525 -14.506 5.409 1.230 1.359 -0.353 H18 Y33 41 Y33 H19 H19 H 0 1 N N N 6.537 -12.902 3.860 2.293 -1.471 -0.874 H19 Y33 42 Y33 H20 H20 H 0 1 N N N 5.901 -14.181 2.773 1.373 -0.411 -1.985 H20 Y33 43 Y33 H21 H21 H 0 1 N N N 7.904 -15.863 5.900 3.056 1.711 1.180 H21 Y33 44 Y33 H22 H22 H 0 1 N N N 7.675 -14.134 6.330 3.412 -0.043 1.291 H22 Y33 45 Y33 H23 H23 H 0 1 N N N 9.185 -13.505 4.742 4.153 1.931 -0.864 H23 Y33 46 Y33 H24 H24 H 0 1 N N N 12.285 -16.830 5.988 8.289 0.645 -0.029 H24 Y33 47 Y33 H25 H25 H 0 1 N N N 11.082 -17.762 5.034 7.943 0.811 1.709 H25 Y33 48 Y33 H26 H26 H 0 1 N N N 12.242 -16.673 4.200 7.484 -0.678 0.848 H26 Y33 49 Y33 H27 H27 H 0 1 N N N 11.673 -15.360 7.038 5.075 2.308 1.551 H27 Y33 50 Y33 H28 H28 H 0 1 N N N 11.086 -13.896 6.178 6.796 2.754 1.456 H28 Y33 51 Y33 H29 H29 H 0 1 N N N 9.920 -14.971 7.022 5.740 2.976 0.041 H29 Y33 52 Y33 H30 H30 H 0 1 N N N 8.002 -15.153 2.652 4.018 -0.575 -2.047 H30 Y33 53 Y33 O7A O7A O 0 1 N Y N 0.619 -17.206 0.166 -5.673 2.510 -0.431 O7A Y33 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y33 O31 C31 DOUB N N 1 Y33 C31 O32 SING N N 2 Y33 C31 C3 SING N N 3 Y33 C7 O7 DOUB N N 4 Y33 C7 C6 SING N N 5 Y33 N4 C3 SING N N 6 Y33 N4 C5 SING N N 7 Y33 C3 C2 DOUB N N 8 Y33 C26 C5 SING N N 9 Y33 C5 C6 SING N N 10 Y33 C5 C1 SING N N 11 Y33 C6 C61 SING N N 12 Y33 C62 C61 SING N N 13 Y33 C61 O62 SING N N 14 Y33 C2 C1 SING N N 15 Y33 C2 S21 SING N N 16 Y33 N3A C2A SING N N 17 Y33 N3A C5A SING N N 18 Y33 O6A C6A DOUB N N 19 Y33 C2A C1A SING N N 20 Y33 S21 C1A SING N N 21 Y33 C6A C5A SING N N 22 Y33 C6A N7A SING N N 23 Y33 C5A C4A SING N N 24 Y33 C1A C4A SING N N 25 Y33 C8A N7A SING N N 26 Y33 N7A C9A SING N N 27 Y33 C1 H1 SING N N 28 Y33 C1 H2 SING N N 29 Y33 N4 H5 SING N N 30 Y33 C6 H7 SING N N 31 Y33 C26 H9 SING N N 32 Y33 C26 H10 SING N N 33 Y33 C26 H11 SING N N 34 Y33 C61 H12 SING N N 35 Y33 C62 H13 SING N N 36 Y33 C62 H14 SING N N 37 Y33 C62 H15 SING N N 38 Y33 O32 H16 SING N N 39 Y33 O62 H17 SING N N 40 Y33 C1A H18 SING N N 41 Y33 C2A H19 SING N N 42 Y33 C2A H20 SING N N 43 Y33 C4A H21 SING N N 44 Y33 C4A H22 SING N N 45 Y33 C5A H23 SING N N 46 Y33 C8A H24 SING N N 47 Y33 C8A H25 SING N N 48 Y33 C8A H26 SING N N 49 Y33 C9A H27 SING N N 50 Y33 C9A H28 SING N N 51 Y33 C9A H29 SING N N 52 Y33 N3A H30 SING N N 53 Y33 C7 O7A SING N N 54 Y33 O7A H8 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y33 SMILES ACDLabs 12.01 "CC1(CC(SC2CC(NC2)C(=O)N(C)C)=C(N1)C(=O)O)C(C(O)C)C(=O)O" Y33 InChI InChI 1.06 "InChI=1S/C17H27N3O6S/c1-8(21)12(15(23)24)17(2)6-11(13(19-17)16(25)26)27-9-5-10(18-7-9)14(22)20(3)4/h8-10,12,18-19,21H,5-7H2,1-4H3,(H,23,24)(H,25,26)/t8-,9+,10+,12+,17-/m1/s1" Y33 InChIKey InChI 1.06 VXMSHTHJORSDKD-YTOYJYLESA-N Y33 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H](C(O)=O)[C@@]1(C)CC(=C(N1)C(O)=O)S[C@@H]2CN[C@@H](C2)C(=O)N(C)C" Y33 SMILES CACTVS 3.385 "C[CH](O)[CH](C(O)=O)[C]1(C)CC(=C(N1)C(O)=O)S[CH]2CN[CH](C2)C(=O)N(C)C" Y33 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C(=O)O)[C@]1(CC(=C(N1)C(=O)O)S[C@H]2C[C@H](NC2)C(=O)N(C)C)C)O" Y33 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)O)C1(CC(=C(N1)C(=O)O)SC2CC(NC2)C(=O)N(C)C)C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y33 "SYSTEMATIC NAME" ACDLabs 12.01 "(5R)-5-[(1S,2R)-1-carboxy-2-hydroxypropyl]-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid" Y33 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-2-methyl-1,3-dihydropyrrole-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y33 "Create component" 2023-01-03 RCSB Y33 "Initial release" 2023-10-11 RCSB #