data_Y37 # _chem_comp.id Y37 _chem_comp.name "(1R,4R)-4-fluoro-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]cyclopent-2-ene-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 F N2 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-01 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.274 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y37 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LK1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y37 C20 C1 C 0 1 N N N N N N -4.568 -20.547 -32.899 4.545 -1.002 -1.322 C20 Y37 1 Y37 C21 C2 C 0 1 N N R N N N -5.073 -21.055 -31.511 4.263 -1.315 0.166 C21 Y37 2 Y37 C19 C3 C 0 1 N N N N N N -3.938 -21.027 -30.517 3.007 -0.539 0.491 C19 Y37 3 Y37 C18 C4 C 0 1 N N R N N N -3.097 -20.108 -32.648 3.134 -0.636 -1.835 C18 Y37 4 Y37 C17 C5 C 0 1 N N N N N N -2.758 -20.490 -31.231 2.387 -0.167 -0.608 C17 Y37 5 Y37 C01 C6 C 0 1 N N N N N N -1.667 -19.151 -29.374 0.563 0.965 0.618 C01 Y37 6 Y37 C02 C7 C 0 1 Y N N N N N -1.057 -19.962 -28.243 -0.695 1.737 0.312 C02 Y37 7 Y37 C03 C8 C 0 1 Y N N N N N 0.321 -19.987 -28.066 -1.912 1.086 0.176 C03 Y37 8 Y37 C04 C9 C 0 1 N N N N N N 1.289 -19.235 -28.986 -1.997 -0.410 0.333 C04 Y37 9 Y37 C05 C10 C 0 1 Y N N N N N 0.811 -20.735 -27.015 -3.045 1.826 -0.103 C05 Y37 10 Y37 C07 C11 C 0 1 Y N N N N N -1.301 -21.396 -26.367 -1.845 3.793 -0.115 C07 Y37 11 Y37 C08 C12 C 0 1 N N N N N N -2.197 -22.186 -25.413 -1.828 5.291 -0.283 C08 Y37 12 Y37 C09 C13 C 0 1 Y N N N N N -1.885 -20.672 -27.387 -0.665 3.119 0.165 C09 Y37 13 Y37 C33 C14 C 0 1 N N N N N N -6.033 -22.229 -31.450 5.407 -0.846 1.027 C33 Y37 14 Y37 F22 F1 F 0 1 N N N N N N -2.628 -18.933 -33.160 2.509 -1.761 -2.385 F22 Y37 15 Y37 N06 N1 N 0 1 Y N N N N N 0.009 -21.411 -26.215 -2.981 3.136 -0.242 N06 Y37 16 Y37 N11 N2 N 0 1 N N N N N N -1.590 -19.971 -30.563 1.204 0.561 -0.636 N11 Y37 17 Y37 O10 O1 O 0 1 N N N N N N -3.276 -20.664 -27.545 0.503 3.801 0.295 O10 Y37 18 Y37 O13 O2 O 0 1 N N N N N N 2.952 -17.316 -30.599 -3.125 -3.212 -0.947 O13 Y37 19 Y37 O14 O3 O 0 1 N N N N N N 1.039 -17.859 -28.973 -3.350 -0.831 0.147 O14 Y37 20 Y37 O15 O4 O 0 1 N N N N N N 1.357 -15.524 -29.980 -5.412 -2.463 0.113 O15 Y37 21 Y37 O16 O5 O 0 1 N N N N N N 0.637 -17.369 -31.468 -3.389 -2.931 1.548 O16 Y37 22 Y37 O34 O6 O 0 1 N N N N N N -6.375 -22.685 -30.328 5.362 -1.022 2.357 O34 Y37 23 Y37 O35 O7 O 0 1 N N N N N N -6.471 -22.721 -32.523 6.365 -0.311 0.521 O35 Y37 24 Y37 P12 P1 P 0 1 N N N N N N 1.507 -16.992 -30.293 -3.810 -2.372 0.244 P12 Y37 25 Y37 H1 H1 H 0 1 N N N N N N -5.173 -19.696 -33.244 5.228 -0.157 -1.421 H1 Y37 26 Y37 H2 H2 H 0 1 N N N N N N -4.610 -21.353 -33.646 4.934 -1.879 -1.839 H2 Y37 27 Y37 H3 H3 H 0 1 N N N N N N -5.703 -20.218 -31.176 4.098 -2.383 0.304 H3 Y37 28 Y37 H4 H4 H 0 1 N N N N N N -3.979 -21.339 -29.484 2.665 -0.321 1.492 H4 Y37 29 Y37 H5 H5 H 0 1 N N N N N N -2.544 -20.866 -33.222 3.193 0.164 -2.572 H5 Y37 30 Y37 H6 H6 H 0 1 N N N N N N -1.102 -18.219 -29.519 1.245 1.595 1.188 H6 Y37 31 Y37 H7 H7 H 0 1 N N N N N N -2.716 -18.912 -29.146 0.313 0.079 1.201 H7 Y37 32 Y37 H8 H8 H 0 1 N N N N N N 1.171 -19.611 -30.013 -1.362 -0.890 -0.412 H8 Y37 33 Y37 H9 H9 H 0 1 N N N N N N 2.319 -19.415 -28.645 -1.663 -0.691 1.331 H9 Y37 34 Y37 H10 H10 H 0 1 N N N N N N 1.877 -20.768 -26.843 -3.995 1.325 -0.211 H10 Y37 35 Y37 H11 H11 H 0 1 N N N N N N -1.574 -22.702 -24.668 -2.001 5.766 0.683 H11 Y37 36 Y37 H12 H12 H 0 1 N N N N N N -2.885 -21.497 -24.902 -0.858 5.601 -0.672 H12 Y37 37 Y37 H13 H13 H 0 1 N N N N N N -2.776 -22.927 -25.983 -2.611 5.588 -0.980 H13 Y37 38 Y37 H14 H14 H 0 1 N N N N N N -1.037 -20.767 -30.315 0.802 0.801 -1.486 H14 Y37 39 Y37 H15 H15 H 0 1 N N N N N N -3.675 -21.202 -26.872 0.993 3.903 -0.533 H15 Y37 40 Y37 H16 H16 H 0 1 N N N N N N 3.015 -17.691 -31.470 -3.358 -2.900 -1.832 H16 Y37 41 Y37 H17 H17 H 0 1 N N N N N N 0.742 -15.131 -30.589 -5.760 -3.363 0.162 H17 Y37 42 Y37 H18 H18 H 0 1 N N N N N N -6.976 -23.410 -30.450 6.119 -0.705 2.868 H18 Y37 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y37 F22 C18 SING N N 1 Y37 C20 C18 SING N N 2 Y37 C20 C21 SING N N 3 Y37 C18 C17 SING N N 4 Y37 O35 C33 DOUB N N 5 Y37 C21 C33 SING N N 6 Y37 C21 C19 SING N N 7 Y37 O16 P12 DOUB N N 8 Y37 C33 O34 SING N N 9 Y37 C17 N11 SING N N 10 Y37 C17 C19 DOUB N N 11 Y37 O13 P12 SING N N 12 Y37 N11 C01 SING N N 13 Y37 P12 O15 SING N N 14 Y37 P12 O14 SING N N 15 Y37 C01 C02 SING N N 16 Y37 C04 O14 SING N N 17 Y37 C04 C03 SING N N 18 Y37 C02 C03 SING Y N 19 Y37 C02 C09 DOUB Y N 20 Y37 C03 C05 DOUB Y N 21 Y37 O10 C09 SING N N 22 Y37 C09 C07 SING Y N 23 Y37 C05 N06 SING Y N 24 Y37 C07 N06 DOUB Y N 25 Y37 C07 C08 SING N N 26 Y37 C20 H1 SING N N 27 Y37 C20 H2 SING N N 28 Y37 C21 H3 SING N N 29 Y37 C19 H4 SING N N 30 Y37 C18 H5 SING N N 31 Y37 C01 H6 SING N N 32 Y37 C01 H7 SING N N 33 Y37 C04 H8 SING N N 34 Y37 C04 H9 SING N N 35 Y37 C05 H10 SING N N 36 Y37 C08 H11 SING N N 37 Y37 C08 H12 SING N N 38 Y37 C08 H13 SING N N 39 Y37 N11 H14 SING N N 40 Y37 O10 H15 SING N N 41 Y37 O13 H16 SING N N 42 Y37 O15 H17 SING N N 43 Y37 O34 H18 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y37 SMILES ACDLabs 12.01 "C1C(C(=CC1C(O)=O)NCc2c(cnc(C)c2O)COP(O)(O)=O)F" Y37 InChI InChI 1.03 "InChI=1S/C14H18FN2O7P/c1-7-13(18)10(9(4-16-7)6-24-25(21,22)23)5-17-12-3-8(14(19)20)2-11(12)15/h3-4,8,11,17-18H,2,5-6H2,1H3,(H,19,20)(H2,21,22,23)/t8-,11-/m1/s1" Y37 InChIKey InChI 1.03 YUSFTNIOKSVGAN-LDYMZIIASA-N Y37 SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CNC2=C[C@@H](C[C@H]2F)C(O)=O)c1O" Y37 SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CNC2=C[CH](C[CH]2F)C(O)=O)c1O" Y37 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=C[C@@H](C[C@H]2F)C(=O)O)O" Y37 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=CC(CC2F)C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y37 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,4R)-4-fluoro-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]cyclopent-2-ene-1-carboxylic acid" Y37 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},4~{R})-4-fluoranyl-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclopent-2-ene-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y37 "Create component" 2021-02-01 RCSB Y37 "Initial release" 2022-02-16 RCSB Y37 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id Y37 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C01 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #