data_Y39 # _chem_comp.id Y39 _chem_comp.name "(1S,2S)-2-nonylcyclopropanecarboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H24 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-05-02 _chem_comp.pdbx_modified_date 2014-11-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 212.328 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y39 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4PG0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y39 OAB O1 O 0 1 N N N 5.830 -22.434 13.375 -6.693 0.017 0.746 OAB Y39 1 Y39 CAM C1 C 0 1 N N N 5.430 -22.060 12.268 -5.502 0.394 0.256 CAM Y39 2 Y39 OAC O2 O 0 1 N N N 6.127 -21.560 11.379 -5.348 1.519 -0.159 OAC Y39 3 Y39 CAO C2 C 0 1 N N S 3.956 -22.286 11.940 -4.356 -0.584 0.222 CAO Y39 4 Y39 CAL C3 C 0 1 N N N 3.557 -23.702 12.132 -3.885 -1.073 -1.149 CAL Y39 5 Y39 CAN C4 C 0 1 N N R 2.998 -22.651 13.071 -3.024 -0.093 -0.349 CAN Y39 6 Y39 CAK C5 C 0 1 N N N 1.547 -22.276 12.742 -1.742 -0.635 0.286 CAK Y39 7 Y39 CAJ C6 C 0 1 N N N 0.582 -22.666 13.859 -0.531 0.065 -0.335 CAJ Y39 8 Y39 CAI C7 C 0 1 N N N -0.831 -22.229 13.444 0.752 -0.477 0.299 CAI Y39 9 Y39 CAH C8 C 0 1 N N N -1.652 -21.827 14.669 1.962 0.223 -0.322 CAH Y39 10 Y39 CAG C9 C 0 1 N N N -3.022 -21.310 14.214 3.245 -0.319 0.312 CAG Y39 11 Y39 CAF C10 C 0 1 N N N -4.128 -21.819 15.138 4.456 0.381 -0.309 CAF Y39 12 Y39 CAE C11 C 0 1 N N N -4.485 -20.742 16.168 5.739 -0.161 0.326 CAE Y39 13 Y39 CAD C12 C 0 1 N N N -5.378 -19.704 15.499 6.949 0.539 -0.295 CAD Y39 14 Y39 CAA C13 C 0 1 N N N -6.406 -19.187 16.499 8.232 -0.002 0.339 CAA Y39 15 Y39 H1 H1 H 0 1 N N N 6.765 -22.279 13.444 -7.398 0.679 0.747 H1 Y39 16 Y39 H2 H2 H 0 1 N N N 3.540 -21.740 11.081 -4.319 -1.293 1.049 H2 Y39 17 Y39 H3 H3 H 0 1 N N N 2.896 -24.188 11.399 -3.537 -2.103 -1.224 H3 Y39 18 Y39 H4 H4 H 0 1 N N N 4.292 -24.432 12.503 -4.403 -0.686 -2.027 H4 Y39 19 Y39 H5 H5 H 0 1 N N N 3.345 -22.607 14.114 -2.977 0.938 -0.699 H5 Y39 20 Y39 H6 H6 H 0 1 N N N 1.489 -21.188 12.587 -1.759 -0.446 1.359 H6 Y39 21 Y39 H7 H7 H 0 1 N N N 1.248 -22.794 11.819 -1.673 -1.708 0.106 H7 Y39 22 Y39 H8 H8 H 0 1 N N N 0.606 -23.755 14.009 -0.513 -0.124 -1.409 H8 Y39 23 Y39 H9 H9 H 0 1 N N N 0.869 -22.161 14.793 -0.600 1.138 -0.156 H9 Y39 24 Y39 H10 H10 H 0 1 N N N -0.758 -21.370 12.760 0.734 -0.288 1.372 H10 Y39 25 Y39 H11 H11 H 0 1 N N N -1.332 -23.064 12.932 0.821 -1.550 0.120 H11 Y39 26 Y39 H12 H12 H 0 1 N N N -1.788 -22.701 15.323 1.980 0.034 -1.395 H12 Y39 27 Y39 H13 H13 H 0 1 N N N -1.125 -21.035 15.221 1.893 1.296 -0.143 H13 Y39 28 Y39 H14 H14 H 0 1 N N N -3.016 -20.210 14.230 3.227 -0.130 1.386 H14 Y39 29 Y39 H15 H15 H 0 1 N N N -3.218 -21.660 13.190 3.314 -1.392 0.133 H15 Y39 30 Y39 H16 H16 H 0 1 N N N -5.019 -22.062 14.541 4.474 0.192 -1.382 H16 Y39 31 Y39 H17 H17 H 0 1 N N N -3.780 -22.722 15.661 4.387 1.454 -0.129 H17 Y39 32 Y39 H18 H18 H 0 1 N N N -5.019 -21.201 17.013 5.721 0.028 1.399 H18 Y39 33 Y39 H19 H19 H 0 1 N N N -3.566 -20.260 16.533 5.808 -1.234 0.146 H19 Y39 34 Y39 H20 H20 H 0 1 N N N -4.761 -18.866 15.143 6.967 0.351 -1.369 H20 Y39 35 Y39 H21 H21 H 0 1 N N N -5.898 -20.165 14.646 6.880 1.612 -0.116 H21 Y39 36 Y39 H22 H22 H 0 1 N N N -7.048 -18.438 16.012 9.095 0.496 -0.103 H22 Y39 37 Y39 H23 H23 H 0 1 N N N -7.024 -20.024 16.855 8.214 0.186 1.412 H23 Y39 38 Y39 H24 H24 H 0 1 N N N -5.887 -18.726 17.352 8.301 -1.075 0.160 H24 Y39 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y39 OAC CAM DOUB N N 1 Y39 CAO CAL SING N N 2 Y39 CAO CAM SING N N 3 Y39 CAO CAN SING N N 4 Y39 CAL CAN SING N N 5 Y39 CAM OAB SING N N 6 Y39 CAK CAN SING N N 7 Y39 CAK CAJ SING N N 8 Y39 CAI CAJ SING N N 9 Y39 CAI CAH SING N N 10 Y39 CAG CAH SING N N 11 Y39 CAG CAF SING N N 12 Y39 CAF CAE SING N N 13 Y39 CAD CAE SING N N 14 Y39 CAD CAA SING N N 15 Y39 OAB H1 SING N N 16 Y39 CAO H2 SING N N 17 Y39 CAL H3 SING N N 18 Y39 CAL H4 SING N N 19 Y39 CAN H5 SING N N 20 Y39 CAK H6 SING N N 21 Y39 CAK H7 SING N N 22 Y39 CAJ H8 SING N N 23 Y39 CAJ H9 SING N N 24 Y39 CAI H10 SING N N 25 Y39 CAI H11 SING N N 26 Y39 CAH H12 SING N N 27 Y39 CAH H13 SING N N 28 Y39 CAG H14 SING N N 29 Y39 CAG H15 SING N N 30 Y39 CAF H16 SING N N 31 Y39 CAF H17 SING N N 32 Y39 CAE H18 SING N N 33 Y39 CAE H19 SING N N 34 Y39 CAD H20 SING N N 35 Y39 CAD H21 SING N N 36 Y39 CAA H22 SING N N 37 Y39 CAA H23 SING N N 38 Y39 CAA H24 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y39 SMILES ACDLabs 12.01 "O=C(O)C1CC1CCCCCCCCC" Y39 InChI InChI 1.03 "InChI=1S/C13H24O2/c1-2-3-4-5-6-7-8-9-11-10-12(11)13(14)15/h11-12H,2-10H2,1H3,(H,14,15)/t11-,12-/m0/s1" Y39 InChIKey InChI 1.03 GVGYASDUOPEXET-RYUDHWBXSA-N Y39 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCC[C@H]1C[C@@H]1C(O)=O" Y39 SMILES CACTVS 3.385 "CCCCCCCCC[CH]1C[CH]1C(O)=O" Y39 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCCCCCCCC[C@H]1C[C@@H]1C(=O)O" Y39 SMILES "OpenEye OEToolkits" 1.9.2 "CCCCCCCCCC1CC1C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y39 "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-nonylcyclopropanecarboxylic acid" Y39 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(1S,2S)-2-nonylcyclopropane-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y39 "Create component" 2014-05-02 RCSB Y39 "Modify descriptor" 2014-09-05 RCSB Y39 "Initial release" 2014-11-19 RCSB #