data_Y3I # _chem_comp.id Y3I _chem_comp.name "(3P)-3-{4-[(3R,5S)-3-amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 Cl N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-03 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 366.847 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y3I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FJZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y3I C1 C1 C 0 1 N N N 53.004 16.670 38.134 1.852 4.057 -1.038 C1 Y3I 1 Y3I C4 C2 C 0 1 Y N N 51.923 14.163 35.608 0.294 2.402 1.900 C4 Y3I 2 Y3I C5 C3 C 0 1 Y N N 52.125 15.378 36.240 0.720 3.385 1.029 C5 Y3I 3 Y3I C3 C4 C 0 1 Y N N 52.423 12.997 36.158 0.549 1.072 1.629 C3 Y3I 4 Y3I C7 C5 C 0 1 Y N N 53.352 14.251 37.993 1.671 1.696 -0.413 C7 Y3I 5 Y3I C11 C6 C 0 1 Y N N 55.176 8.147 36.811 -0.737 -4.041 -0.726 C11 Y3I 6 Y3I C6 C7 C 0 1 Y N N 52.832 15.421 37.443 1.412 3.038 -0.134 C6 Y3I 7 Y3I C13 C8 C 0 1 Y N N 54.276 10.620 37.311 0.520 -1.753 -0.134 C13 Y3I 8 Y3I C8 C9 C 0 1 Y N N 53.143 13.030 37.355 1.239 0.712 0.471 C8 Y3I 9 Y3I C9 C10 C 0 1 Y N N 53.647 11.769 37.967 1.511 -0.716 0.182 C9 Y3I 10 Y3I C12 C11 C 0 1 Y N N 54.333 9.615 38.265 1.245 -2.941 -0.329 C12 Y3I 11 Y3I C14 C12 C 0 1 Y N N 54.778 10.253 36.023 -0.875 -1.785 -0.266 C14 Y3I 12 Y3I C10 C13 C 0 1 Y N N 53.429 11.390 39.252 2.725 -1.323 0.158 C10 Y3I 13 Y3I C17 C14 C 0 1 N N N 55.607 13.051 32.828 -4.023 0.976 -0.038 C17 Y3I 14 Y3I C15 C15 C 0 1 N N N 55.571 12.470 35.264 -2.260 -0.219 -1.341 C15 Y3I 15 Y3I C2 C16 C 0 1 N N N 55.340 10.667 33.663 -2.632 -0.834 0.973 C2 Y3I 16 Y3I C16 C17 C 0 1 N N S 55.227 13.554 34.226 -2.966 1.124 -1.135 C16 Y3I 17 Y3I C18 C18 C 0 1 N N R 55.007 11.637 32.522 -3.349 0.490 1.248 C18 Y3I 18 Y3I C19 C19 C 0 1 N N N 55.958 14.858 34.548 -3.640 1.551 -2.440 C19 Y3I 19 Y3I N1 N1 N 0 1 N N N 53.109 17.673 38.669 2.202 4.866 -1.756 N1 Y3I 20 Y3I N4 N2 N 0 1 Y N N 54.764 8.361 38.064 0.574 -4.054 -0.622 N4 Y3I 21 Y3I N3 N3 N 0 1 Y N N 55.221 9.000 35.785 -1.455 -2.946 -0.555 N3 Y3I 22 Y3I N2 N4 N 0 1 Y N N 53.826 10.104 39.438 2.570 -2.647 -0.146 N2 Y3I 23 Y3I N5 N5 N 0 1 N N N 54.917 11.193 34.966 -1.631 -0.640 -0.083 N5 Y3I 24 Y3I N6 N6 N 0 1 N N N 55.583 11.129 31.236 -4.365 0.291 2.290 N6 Y3I 25 Y3I CL1 CL1 CL 0 0 N N N 52.777 12.270 40.553 4.242 -0.538 0.466 CL1 Y3I 26 Y3I H1 H1 H 0 1 N N N 51.372 14.126 34.680 -0.236 2.675 2.801 H1 Y3I 27 Y3I H2 H2 H 0 1 N N N 51.738 16.287 35.805 0.519 4.423 1.247 H2 Y3I 28 Y3I H3 H3 H 0 1 N N N 52.256 12.054 35.659 0.212 0.309 2.315 H3 Y3I 29 Y3I H4 H4 H 0 1 N N N 53.916 14.291 38.913 2.205 1.423 -1.311 H4 Y3I 30 Y3I H5 H5 H 0 1 N N N 55.520 7.146 36.599 -1.247 -4.963 -0.964 H5 Y3I 31 Y3I H6 H6 H 0 1 N N N 56.703 12.993 32.759 -4.498 1.941 0.142 H6 Y3I 32 Y3I H7 H7 H 0 1 N N N 55.230 13.765 32.081 -4.775 0.252 -0.351 H7 Y3I 33 Y3I H8 H8 H 0 1 N N N 56.660 12.318 35.270 -2.989 -0.968 -1.651 H8 Y3I 34 Y3I H9 H9 H 0 1 N N N 55.244 12.813 36.257 -1.497 -0.114 -2.112 H9 Y3I 35 Y3I H10 H10 H 0 1 N N N 54.825 9.712 33.480 -2.139 -1.176 1.883 H10 Y3I 36 Y3I H11 H11 H 0 1 N N N 56.427 10.500 33.682 -3.359 -1.580 0.652 H11 Y3I 37 Y3I H12 H12 H 0 1 N N N 54.143 13.738 34.254 -2.236 1.877 -0.839 H12 Y3I 38 Y3I H13 H13 H 0 1 N N N 53.915 11.727 32.430 -2.624 1.233 1.582 H13 Y3I 39 Y3I H14 H14 H 0 1 N N N 55.672 15.201 35.553 -4.146 2.506 -2.292 H14 Y3I 40 Y3I H15 H15 H 0 1 N N N 57.044 14.687 34.514 -2.887 1.656 -3.221 H15 Y3I 41 Y3I H16 H16 H 0 1 N N N 55.684 15.624 33.808 -4.369 0.797 -2.737 H16 Y3I 42 Y3I H17 H17 H 0 1 N N N 53.758 9.595 40.296 3.295 -3.287 -0.221 H17 Y3I 43 Y3I H18 H18 H 0 1 N N N 55.204 10.226 31.034 -3.948 -0.060 3.139 H18 Y3I 44 Y3I H19 H19 H 0 1 N N N 55.353 11.760 30.495 -4.877 1.143 2.464 H19 Y3I 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y3I N6 C18 SING N N 1 Y3I C18 C17 SING N N 2 Y3I C18 C2 SING N N 3 Y3I C17 C16 SING N N 4 Y3I C2 N5 SING N N 5 Y3I C16 C19 SING N N 6 Y3I C16 C15 SING N N 7 Y3I N5 C15 SING N N 8 Y3I N5 C14 SING N N 9 Y3I C4 C3 DOUB Y N 10 Y3I C4 C5 SING Y N 11 Y3I N3 C14 DOUB Y N 12 Y3I N3 C11 SING Y N 13 Y3I C14 C13 SING Y N 14 Y3I C3 C8 SING Y N 15 Y3I C5 C6 DOUB Y N 16 Y3I C11 N4 DOUB Y N 17 Y3I C13 C9 SING Y N 18 Y3I C13 C12 DOUB Y N 19 Y3I C8 C9 SING N N 20 Y3I C8 C7 DOUB Y N 21 Y3I C6 C7 SING Y N 22 Y3I C6 C1 SING N N 23 Y3I C9 C10 DOUB Y N 24 Y3I N4 C12 SING Y N 25 Y3I C1 N1 TRIP N N 26 Y3I C12 N2 SING Y N 27 Y3I C10 N2 SING Y N 28 Y3I C10 CL1 SING N N 29 Y3I C4 H1 SING N N 30 Y3I C5 H2 SING N N 31 Y3I C3 H3 SING N N 32 Y3I C7 H4 SING N N 33 Y3I C11 H5 SING N N 34 Y3I C17 H6 SING N N 35 Y3I C17 H7 SING N N 36 Y3I C15 H8 SING N N 37 Y3I C15 H9 SING N N 38 Y3I C2 H10 SING N N 39 Y3I C2 H11 SING N N 40 Y3I C16 H12 SING N N 41 Y3I C18 H13 SING N N 42 Y3I C19 H14 SING N N 43 Y3I C19 H15 SING N N 44 Y3I C19 H16 SING N N 45 Y3I N2 H17 SING N N 46 Y3I N6 H18 SING N N 47 Y3I N6 H19 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y3I SMILES ACDLabs 12.01 "N#Cc1cccc(c1)c1c2c(ncnc2[NH]c1Cl)N1CC(C)CC(N)C1" Y3I InChI InChI 1.06 "InChI=1S/C19H19ClN6/c1-11-5-14(22)9-26(8-11)19-16-15(13-4-2-3-12(6-13)7-21)17(20)25-18(16)23-10-24-19/h2-4,6,10-11,14H,5,8-9,22H2,1H3,(H,23,24,25)/t11-,14+/m0/s1" Y3I InChIKey InChI 1.06 BSBZFPBEYMSVPJ-SMDDNHRTSA-N Y3I SMILES_CANONICAL CACTVS 3.385 "C[C@H]1C[C@@H](N)CN(C1)c2ncnc3[nH]c(Cl)c(c4cccc(c4)C#N)c23" Y3I SMILES CACTVS 3.385 "C[CH]1C[CH](N)CN(C1)c2ncnc3[nH]c(Cl)c(c4cccc(c4)C#N)c23" Y3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C[C@H](CN(C1)c2c3c(c([nH]c3ncn2)Cl)c4cccc(c4)C#N)N" Y3I SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC(CN(C1)c2c3c(c([nH]c3ncn2)Cl)c4cccc(c4)C#N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y3I "SYSTEMATIC NAME" ACDLabs 12.01 "(3P)-3-{4-[(3R,5S)-3-amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile" Y3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[4-[(3~{R},5~{S})-3-azanyl-5-methyl-piperidin-1-yl]-6-chloranyl-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y3I "Create component" 2023-01-03 RCSB Y3I "Initial release" 2023-04-05 RCSB #