data_Y3M # _chem_comp.id Y3M _chem_comp.name "ethyl (9S)-9-[5-(1H-benzimidazol-2-ylsulfanyl)furan-2-yl]-8-hydroxy-5,6,7,9-tetrahydro-2H-pyrrolo[3,4-b]quinoline-3-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H22 N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-09-02 _chem_comp.pdbx_modified_date 2014-11-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.532 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y3M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4UYN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y3M O17 O17 O 0 1 N N N 25.411 -9.661 10.671 4.071 -0.233 0.992 O17 Y3M 1 Y3M C16 C16 C 0 1 N N N 25.958 -8.584 10.856 3.971 -0.310 -0.219 C16 Y3M 2 Y3M O18 O18 O 0 1 N N N 26.417 -7.830 9.700 4.957 0.164 -1.010 O18 Y3M 3 Y3M C19 C19 C 0 1 N N N 26.207 -8.337 8.384 6.089 0.743 -0.358 C19 Y3M 4 Y3M C20 C20 C 0 1 N N N 24.928 -7.755 7.817 7.094 1.221 -1.408 C20 Y3M 5 Y3M C7 C7 C 0 1 Y N N 26.173 -8.029 12.229 2.825 -0.901 -0.797 C7 Y3M 6 Y3M C3 C3 C 0 1 Y N N 26.862 -6.712 12.382 1.732 -1.437 -0.109 C3 Y3M 7 Y3M N6 N6 N 0 1 Y N N 25.838 -8.532 13.448 2.572 -1.051 -2.148 N6 Y3M 8 Y3M C5 C5 C 0 1 Y N N 26.250 -7.675 14.432 1.369 -1.663 -2.306 C5 Y3M 9 Y3M C4 C4 C 0 1 Y N N 26.889 -6.560 13.825 0.837 -1.909 -1.098 C4 Y3M 10 Y3M C2 C2 C 0 1 N N S 27.495 -5.425 14.497 -0.452 -2.549 -0.632 C2 Y3M 11 Y3M C8 C8 C 0 1 N N N 28.063 -4.479 13.524 -0.651 -2.616 0.872 C8 Y3M 12 Y3M C13 C13 C 0 1 N N N 28.741 -3.248 14.053 -1.769 -3.164 1.369 C13 Y3M 13 Y3M O14 O14 O 0 1 N N N 28.794 -3.050 15.256 -2.700 -3.649 0.521 O14 Y3M 14 Y3M C12 C12 C 0 1 N N N 29.330 -2.258 13.090 -2.006 -3.251 2.853 C12 Y3M 15 Y3M C11 C11 C 0 1 N N N 29.756 -2.951 11.794 -1.295 -2.087 3.548 C11 Y3M 16 Y3M C10 C10 C 0 1 N N N 28.579 -3.674 11.107 0.196 -2.142 3.203 C10 Y3M 17 Y3M C9 C9 C 0 1 N N N 27.978 -4.706 12.046 0.361 -2.089 1.701 C9 Y3M 18 Y3M N1 N1 N 0 1 N N N 27.388 -5.808 11.534 1.444 -1.554 1.207 N1 Y3M 19 Y3M C15 C15 C 0 1 Y N N 26.444 -4.821 15.334 -1.602 -1.778 -1.225 C15 Y3M 20 Y3M O24 O24 O 0 1 Y N N 26.071 -5.419 16.491 -1.858 -0.471 -1.028 O24 Y3M 21 Y3M C23 C23 C 0 1 Y N N 25.066 -4.613 16.884 -2.961 -0.122 -1.711 C23 Y3M 22 Y3M C22 C22 C 0 1 Y N N 24.814 -3.523 16.044 -3.424 -1.218 -2.358 C22 Y3M 23 Y3M C21 C21 C 0 1 Y N N 25.734 -3.667 15.007 -2.543 -2.278 -2.047 C21 Y3M 24 Y3M S25 S25 S 0 1 N N N 24.207 -5.009 18.347 -3.683 1.485 -1.757 S25 Y3M 25 Y3M C26 C26 C 0 1 Y N N 25.049 -4.476 19.774 -2.562 2.353 -0.709 C26 Y3M 26 Y3M N28 N28 N 0 1 Y N N 24.662 -4.749 21.021 -1.518 1.824 -0.121 N28 Y3M 27 Y3M C29 C29 C 0 1 Y N N 25.566 -4.087 21.778 -0.877 2.772 0.610 C29 Y3M 28 Y3M C34 C34 C 0 1 Y N N 25.693 -3.947 23.153 0.265 2.754 1.415 C34 Y3M 29 Y3M C33 C33 C 0 1 Y N N 26.715 -3.153 23.669 0.677 3.908 2.043 C33 Y3M 30 Y3M C32 C32 C 0 1 Y N N 27.621 -2.516 22.822 -0.033 5.089 1.883 C32 Y3M 31 Y3M C31 C31 C 0 1 Y N N 27.518 -2.672 21.451 -1.162 5.123 1.091 C31 Y3M 32 Y3M C30 C30 C 0 1 Y N N 26.481 -3.446 20.928 -1.591 3.971 0.451 C30 Y3M 33 Y3M N27 N27 N 0 1 Y N N 26.136 -3.711 19.659 -2.650 3.679 -0.393 N27 Y3M 34 Y3M H191 H191 H 0 0 N N N 27.055 -8.054 7.742 5.766 1.591 0.248 H191 Y3M 35 Y3M H192 H192 H 0 0 N N N 26.126 -9.433 8.422 6.560 -0.002 0.283 H192 Y3M 36 Y3M H201 H201 H 0 0 N N N 24.765 -8.146 6.802 7.957 1.663 -0.911 H201 Y3M 37 Y3M H202 H202 H 0 0 N N N 24.081 -8.038 8.459 7.417 0.374 -2.013 H202 Y3M 38 Y3M H203 H203 H 0 0 N N N 25.009 -6.659 7.779 6.623 1.966 -2.049 H203 Y3M 39 Y3M H6 H6 H 0 1 N N N 25.362 -9.398 13.602 3.159 -0.765 -2.866 H6 Y3M 40 Y3M H5 H5 H 0 1 N N N 26.113 -7.821 15.493 0.913 -1.910 -3.253 H5 Y3M 41 Y3M H2 H2 H 0 1 N N N 28.302 -5.786 15.151 -0.490 -3.565 -1.026 H2 Y3M 42 Y3M H14 H14 H 0 1 N N N 29.252 -2.235 15.423 -3.474 -4.026 0.962 H14 Y3M 43 Y3M H121 H121 H 0 0 N N N 28.578 -1.489 12.858 -3.076 -3.197 3.054 H121 Y3M 44 Y3M H122 H122 H 0 0 N N N 30.209 -1.784 13.552 -1.612 -4.195 3.230 H122 Y3M 45 Y3M H111 H111 H 0 0 N N N 30.159 -2.195 11.104 -1.715 -1.143 3.201 H111 Y3M 46 Y3M H112 H112 H 0 0 N N N 30.538 -3.689 12.027 -1.424 -2.171 4.627 H112 Y3M 47 Y3M H101 H101 H 0 0 N N N 27.809 -2.937 10.835 0.706 -1.291 3.656 H101 Y3M 48 Y3M H102 H102 H 0 0 N N N 28.942 -4.177 10.198 0.623 -3.069 3.584 H102 Y3M 49 Y3M H21 H21 H 0 1 N N N 25.867 -3.029 14.146 -2.612 -3.296 -2.399 H21 Y3M 50 Y3M H22 H22 H 0 1 N N N 24.074 -2.746 16.170 -4.296 -1.271 -2.993 H22 Y3M 51 Y3M H27 H27 H 0 1 N N N 26.589 -3.406 18.821 -3.329 4.300 -0.701 H27 Y3M 52 Y3M H34 H34 H 0 1 N N N 25.005 -4.449 23.817 0.822 1.838 1.545 H34 Y3M 53 Y3M H33 H33 H 0 1 N N N 26.807 -3.029 24.738 1.560 3.894 2.666 H33 Y3M 54 Y3M H32 H32 H 0 1 N N N 28.405 -1.900 23.237 0.301 5.987 2.382 H32 Y3M 55 Y3M H31 H31 H 0 1 N N N 28.232 -2.200 20.793 -1.710 6.046 0.970 H31 Y3M 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y3M O17 C16 DOUB N N 1 Y3M C16 O18 SING N N 2 Y3M C16 C7 SING N N 3 Y3M O18 C19 SING N N 4 Y3M C19 C20 SING N N 5 Y3M C7 C3 DOUB Y N 6 Y3M C7 N6 SING Y N 7 Y3M C3 C4 SING Y N 8 Y3M C3 N1 SING N N 9 Y3M N6 C5 SING Y N 10 Y3M C5 C4 DOUB Y N 11 Y3M C4 C2 SING N N 12 Y3M C2 C8 SING N N 13 Y3M C2 C15 SING N N 14 Y3M C8 C13 DOUB N N 15 Y3M C8 C9 SING N N 16 Y3M C13 O14 SING N N 17 Y3M C13 C12 SING N N 18 Y3M C12 C11 SING N N 19 Y3M C11 C10 SING N N 20 Y3M C10 C9 SING N N 21 Y3M C9 N1 DOUB N N 22 Y3M C15 O24 SING Y N 23 Y3M C15 C21 DOUB Y N 24 Y3M O24 C23 SING Y N 25 Y3M C23 C22 DOUB Y N 26 Y3M C23 S25 SING N N 27 Y3M C22 C21 SING Y N 28 Y3M S25 C26 SING N N 29 Y3M C26 N28 DOUB Y N 30 Y3M C26 N27 SING Y N 31 Y3M N28 C29 SING Y N 32 Y3M C29 C34 SING Y N 33 Y3M C29 C30 DOUB Y N 34 Y3M C34 C33 DOUB Y N 35 Y3M C33 C32 SING Y N 36 Y3M C32 C31 DOUB Y N 37 Y3M C31 C30 SING Y N 38 Y3M C30 N27 SING Y N 39 Y3M C19 H191 SING N N 40 Y3M C19 H192 SING N N 41 Y3M C20 H201 SING N N 42 Y3M C20 H202 SING N N 43 Y3M C20 H203 SING N N 44 Y3M N6 H6 SING N N 45 Y3M C5 H5 SING N N 46 Y3M C2 H2 SING N N 47 Y3M O14 H14 SING N N 48 Y3M C12 H121 SING N N 49 Y3M C12 H122 SING N N 50 Y3M C11 H111 SING N N 51 Y3M C11 H112 SING N N 52 Y3M C10 H101 SING N N 53 Y3M C10 H102 SING N N 54 Y3M C21 H21 SING N N 55 Y3M C22 H22 SING N N 56 Y3M N27 H27 SING N N 57 Y3M C34 H34 SING N N 58 Y3M C33 H33 SING N N 59 Y3M C32 H32 SING N N 60 Y3M C31 H31 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y3M SMILES ACDLabs 12.01 "O=C(OCC)c6c5N=C1C(=C(O)CCC1)C(c4oc(Sc2nc3c(n2)cccc3)cc4)c5cn6" Y3M InChI InChI 1.03 "InChI=1S/C25H22N4O4S/c1-2-32-24(31)23-22-13(12-26-23)20(21-16(27-22)8-5-9-17(21)30)18-10-11-19(33-18)34-25-28-14-6-3-4-7-15(14)29-25/h3-4,6-7,10-12,20,26,30H,2,5,8-9H2,1H3,(H,28,29)/t20-/m1/s1" Y3M InChIKey InChI 1.03 POXQKNUAFHJFKI-HXUWFJFHSA-N Y3M SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)c1[nH]cc2[C@H](c3oc(Sc4[nH]c5ccccc5n4)cc3)C6=C(O)CCCC6=Nc12" Y3M SMILES CACTVS 3.385 "CCOC(=O)c1[nH]cc2[CH](c3oc(Sc4[nH]c5ccccc5n4)cc3)C6=C(O)CCCC6=Nc12" Y3M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCOC(=O)c1c2c(c[nH]1)[C@@H](C3=C(CCCC3=N2)O)c4ccc(o4)Sc5[nH]c6ccccc6n5" Y3M SMILES "OpenEye OEToolkits" 1.7.6 "CCOC(=O)c1c2c(c[nH]1)C(C3=C(CCCC3=N2)O)c4ccc(o4)Sc5[nH]c6ccccc6n5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y3M "SYSTEMATIC NAME" ACDLabs 12.01 "ethyl (9S)-9-[5-(1H-benzimidazol-2-ylsulfanyl)furan-2-yl]-8-hydroxy-5,6,7,9-tetrahydro-2H-pyrrolo[3,4-b]quinoline-3-carboxylate" Y3M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "ethyl (9S)-9-[5-(1H-benzimidazol-2-ylsulfanyl)furan-2-yl]-8-oxidanyl-5,6,7,9-tetrahydro-2H-pyrrolo[3,4-b]quinoline-3-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y3M "Create component" 2014-09-02 EBI Y3M "Initial release" 2014-11-19 RCSB #