data_Y3O # _chem_comp.id Y3O _chem_comp.name "(3P)-3-{4-[(2S,5R)-5-amino-2-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 Cl N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-03 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 366.847 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y3O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FKO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y3O C1 C1 C 0 1 N N N 52.797 16.374 38.108 3.010 3.356 -1.235 C1 Y3O 1 Y3O C4 C2 C 0 1 Y N N 52.074 13.924 35.404 1.018 2.420 1.758 C4 Y3O 2 Y3O C5 C3 C 0 1 Y N N 52.165 15.124 36.089 1.722 3.176 0.842 C5 Y3O 3 Y3O C3 C4 C 0 1 Y N N 52.632 12.773 35.936 0.863 1.061 1.566 C3 Y3O 4 Y3O C7 C5 C 0 1 Y N N 53.378 14.015 37.859 2.127 1.199 -0.484 C7 Y3O 5 Y3O C11 C6 C 0 1 Y N N 55.658 8.134 36.475 -1.890 -3.565 -0.521 C11 Y3O 6 Y3O C6 C7 C 0 1 Y N N 52.812 15.168 37.325 2.281 2.571 -0.285 C6 Y3O 7 Y3O C13 C8 C 0 1 Y N N 54.570 10.513 37.060 -0.006 -1.726 -0.035 C13 Y3O 8 Y3O C8 C9 C 0 1 Y N N 53.283 12.810 37.170 1.417 0.443 0.444 C8 Y3O 9 Y3O C9 C10 C 0 1 Y N N 53.870 11.576 37.761 1.250 -1.015 0.241 C9 Y3O 10 Y3O C12 C11 C 0 1 Y N N 54.727 9.477 37.989 0.330 -3.086 -0.150 C12 Y3O 11 Y3O C14 C12 C 0 1 Y N N 55.090 10.235 35.752 -1.346 -1.347 -0.190 C14 Y3O 12 Y3O C10 C13 C 0 1 Y N N 53.696 11.135 39.040 2.227 -1.958 0.273 C10 Y3O 13 Y3O C17 C14 C 0 1 N N N 55.797 13.081 32.586 -3.499 2.251 -0.266 C17 Y3O 14 Y3O C16 C15 C 0 1 N N N 55.418 13.543 33.995 -2.362 2.028 -1.268 C16 Y3O 15 Y3O C2 C16 C 0 1 N N N 55.408 10.706 33.353 -2.819 0.140 0.880 C2 Y3O 16 Y3O C18 C17 C 0 1 N N R 55.136 11.744 32.264 -3.113 1.628 1.078 C18 Y3O 17 Y3O C15 C18 C 0 1 N N S 55.788 12.506 35.057 -2.091 0.527 -1.398 C15 Y3O 18 Y3O C19 C19 C 0 1 N N N 57.283 12.398 35.271 -3.349 -0.176 -1.912 C19 Y3O 19 Y3O N1 N1 N 0 1 N N N 52.779 17.312 38.758 3.588 3.979 -1.988 N1 Y3O 20 Y3O N4 N2 N 0 1 Y N N 55.262 8.274 37.745 -0.643 -3.963 -0.392 N4 Y3O 21 Y3O N3 N3 N 0 1 Y N N 55.611 9.022 35.472 -2.247 -2.297 -0.425 N3 Y3O 22 Y3O N2 N4 N 0 1 Y N N 54.205 9.902 39.180 1.683 -3.191 0.041 N2 Y3O 23 Y3O N5 N5 N 0 1 N N N 55.178 11.202 34.720 -1.725 -0.021 -0.086 N5 Y3O 24 Y3O N6 N6 N 0 1 N N N 55.631 11.236 30.951 -4.222 1.787 2.029 N6 Y3O 25 Y3O CL1 CL1 CL 0 0 N N N 52.881 11.822 40.369 3.909 -1.645 0.565 CL1 Y3O 26 Y3O H1 H1 H 0 1 N N N 51.566 13.885 34.452 0.591 2.891 2.631 H1 Y3O 27 Y3O H2 H2 H 0 1 N N N 51.737 16.022 35.669 1.840 4.239 0.998 H2 Y3O 28 Y3O H3 H3 H 0 1 N N N 52.563 11.842 35.393 0.311 0.475 2.286 H3 Y3O 29 Y3O H4 H4 H 0 1 N N N 53.891 14.055 38.808 2.558 0.725 -1.354 H4 Y3O 30 Y3O H5 H5 H 0 1 N N N 56.074 7.170 36.222 -2.652 -4.305 -0.717 H5 Y3O 31 Y3O H6 H6 H 0 1 N N N 56.889 12.969 32.524 -3.667 3.320 -0.138 H6 Y3O 32 Y3O H7 H7 H 0 1 N N N 55.464 13.834 31.857 -4.410 1.781 -0.638 H7 Y3O 33 Y3O H8 H8 H 0 1 N N N 55.948 14.482 34.215 -2.649 2.431 -2.239 H8 Y3O 34 Y3O H9 H9 H 0 1 N N N 54.332 13.717 34.032 -1.462 2.532 -0.915 H9 Y3O 35 Y3O H10 H10 H 0 1 N N N 54.748 9.843 33.182 -2.530 -0.303 1.833 H10 Y3O 36 Y3O H11 H11 H 0 1 N N N 56.457 10.386 33.272 -3.712 -0.360 0.504 H11 Y3O 37 Y3O H12 H12 H 0 1 N N N 54.049 11.901 32.198 -2.225 2.126 1.468 H12 Y3O 38 Y3O H13 H13 H 0 1 N N N 55.347 12.845 36.006 -1.272 0.366 -2.100 H13 Y3O 39 Y3O H14 H14 H 0 1 N N N 57.490 11.641 36.042 -3.619 0.230 -2.886 H14 Y3O 40 Y3O H15 H15 H 0 1 N N N 57.768 12.104 34.329 -3.155 -1.245 -2.004 H15 Y3O 41 Y3O H16 H16 H 0 1 N N N 57.678 13.371 35.598 -4.167 -0.014 -1.210 H16 Y3O 42 Y3O H17 H17 H 0 1 N N N 54.203 9.372 40.028 2.183 -4.022 0.015 H17 Y3O 43 Y3O H18 H18 H 0 1 N N N 55.194 10.360 30.746 -4.437 2.763 2.174 H18 Y3O 44 Y3O H19 H19 H 0 1 N N N 55.408 11.896 30.233 -5.037 1.279 1.721 H19 Y3O 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y3O N6 C18 SING N N 1 Y3O C18 C17 SING N N 2 Y3O C18 C2 SING N N 3 Y3O C17 C16 SING N N 4 Y3O C2 N5 SING N N 5 Y3O C16 C15 SING N N 6 Y3O N5 C15 SING N N 7 Y3O N5 C14 SING N N 8 Y3O C15 C19 SING N N 9 Y3O C4 C3 DOUB Y N 10 Y3O C4 C5 SING Y N 11 Y3O N3 C14 DOUB Y N 12 Y3O N3 C11 SING Y N 13 Y3O C14 C13 SING Y N 14 Y3O C3 C8 SING Y N 15 Y3O C5 C6 DOUB Y N 16 Y3O C11 N4 DOUB Y N 17 Y3O C13 C9 SING Y N 18 Y3O C13 C12 DOUB Y N 19 Y3O C8 C9 SING N N 20 Y3O C8 C7 DOUB Y N 21 Y3O C6 C7 SING Y N 22 Y3O C6 C1 SING N N 23 Y3O N4 C12 SING Y N 24 Y3O C9 C10 DOUB Y N 25 Y3O C12 N2 SING Y N 26 Y3O C1 N1 TRIP N N 27 Y3O C10 N2 SING Y N 28 Y3O C10 CL1 SING N N 29 Y3O C4 H1 SING N N 30 Y3O C5 H2 SING N N 31 Y3O C3 H3 SING N N 32 Y3O C7 H4 SING N N 33 Y3O C11 H5 SING N N 34 Y3O C17 H6 SING N N 35 Y3O C17 H7 SING N N 36 Y3O C16 H8 SING N N 37 Y3O C16 H9 SING N N 38 Y3O C2 H10 SING N N 39 Y3O C2 H11 SING N N 40 Y3O C18 H12 SING N N 41 Y3O C15 H13 SING N N 42 Y3O C19 H14 SING N N 43 Y3O C19 H15 SING N N 44 Y3O C19 H16 SING N N 45 Y3O N2 H17 SING N N 46 Y3O N6 H18 SING N N 47 Y3O N6 H19 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y3O SMILES ACDLabs 12.01 "N#Cc1cccc(c1)c1c2c(ncnc2[NH]c1Cl)N1CC(N)CCC1C" Y3O InChI InChI 1.06 "InChI=1S/C19H19ClN6/c1-11-5-6-14(22)9-26(11)19-16-15(13-4-2-3-12(7-13)8-21)17(20)25-18(16)23-10-24-19/h2-4,7,10-11,14H,5-6,9,22H2,1H3,(H,23,24,25)/t11-,14+/m0/s1" Y3O InChIKey InChI 1.06 IWFMUUASEIUTAN-SMDDNHRTSA-N Y3O SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CC[C@@H](N)CN1c2ncnc3[nH]c(Cl)c(c4cccc(c4)C#N)c23" Y3O SMILES CACTVS 3.385 "C[CH]1CC[CH](N)CN1c2ncnc3[nH]c(Cl)c(c4cccc(c4)C#N)c23" Y3O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CC[C@H](CN1c2c3c(c([nH]c3ncn2)Cl)c4cccc(c4)C#N)N" Y3O SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCC(CN1c2c3c(c([nH]c3ncn2)Cl)c4cccc(c4)C#N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y3O "SYSTEMATIC NAME" ACDLabs 12.01 "(3P)-3-{4-[(2S,5R)-5-amino-2-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile" Y3O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[4-[(2~{S},5~{R})-5-azanyl-2-methyl-piperidin-1-yl]-6-chloranyl-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y3O "Create component" 2023-01-03 RCSB Y3O "Initial release" 2023-04-05 RCSB #